ID JQ266227; SV 1; linear; genomic RNA; STD; VRL; 2915 BP. XX AC JQ266227; XX DT 28-MAR-2012 (Rel. 112, Created) DT 09-NOV-2012 (Rel. 114, Last updated, Version 3) XX DE Sugarcane yellow leaf virus isolate CHN-HN2 multifunctional protein, DE RNA-dependent RNA polymerase, and putative aphid transmission factor genes, DE partial cds; and coat protein and movement protein genes, complete cds. XX KW . XX OS Sugarcane yellow leaf virus OC Viruses; Riboviria; Luteoviridae; Polerovirus. XX RN [1] RP 1-2915 RX DOI; 10.1007/s11262-012-0774-1. RX PUBMED; 22752564. RA Gao S.J., Lin Y.H., Pan Y.B., Damaj M.B., Wang Q.N., Mirkov T.E., RA Chen R.K.; RT "Molecular characterization and phylogenetic analysis of Sugarcane yellow RT leaf virus isolates from China"; RL Virus Genes 45(2):340-349(2012). XX RN [2] RP 1-2915 RA Gao S.-J., Wang Q.-N., Lin Y.-H., Huang X.-D., Chen R.-K.; RT ; RL Submitted (09-DEC-2011) to the INSDC. RL Sugarcane Research Institute, Fujian Agriculture and Forestry, 15 Shangxia RL Dian Rd, Cangshan District, Fuzhou, Fujian 350002, China XX DR MD5; 3ec85375aaaef98583ea3bce5caa1297. XX FH Key Location/Qualifiers FH FT source 1..2915 FT /organism="Sugarcane yellow leaf virus" FT /host="sugarcane cv. YC84-125" FT /isolate="CHN-HN2" FT /mol_type="genomic RNA" FT /country="China" FT /collection_date="Nov-2010" FT /db_xref="taxon:94290" FT CDS <1..667 FT /codon_start=2 FT /product="multifunctional protein" FT /note="ORF1" FT /db_xref="GOA:H9NAD2" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR018019" FT /db_xref="UniProtKB/TrEMBL:H9NAD2" FT /protein_id="AFF19523.1" FT /translation="DYAEEVYEKTLAEPKVWKPASGKYWWEMAEEEDDFVVEAKSPPPD FT KPVENAIAKEQTPAPTVEKAMVADQPTPDQGNEPSGADHLKTPESTPLKQDESTKELLN FT NIVSQLIQKIDLSSIATRVEEKLLRQAQNKQQQTGGKKSPRKRKTSNTSSKPHTNGKSP FT PVTSQGSGNAANSPRYTIPQNRRAHNGESASSQSTQKWRPKSPVSGGPPSAPKPKRQV" FT CDS <208..1926 FT /codon_start=1 FT /product="RNA-dependent RNA polymerase" FT /note="ORF2; produced by predicted -1 translational FT frameshift" FT /db_xref="GOA:H9NAD3" FT /db_xref="InterPro:IPR001795" FT /db_xref="UniProtKB/TrEMBL:H9NAD3" FT /protein_id="AFF19524.1" FT /translation="SADSRPGKRAKWRRPLKNTGIHPAQARRIHKRVAQQHRLAVDSKD FT RPELHCNEGGGETAASGPEQTAADRREEVAQKTQDLEHFFQAAYKWEESTSDIPGFRKC FT GKLPALYHPPKPKSTQWGERIISEHPEMASKVAGFGWPSFGAQAEETSLRLQAARWLKR FT AESAEKPTEKQRKLVIDRVVKAYEPCRTNAPHTSSSGSLIWSDFLKDFKEAVNSLELDA FT GIGLPYKLLHKDTHRQMVEDPKFLPLLTRLTWNRLQKMSQVDFQEMTPEQLVREGLCDP FT IRLFVKGEPHKQAKLDEGRYRLIMSVSLVDQLVARVLFQAQNKREIALWRAIPSKPGFG FT LSTDREAREFIESLSKTVGCSPAEVIHGWRDKIVPTDCSGFDWSVADWMLEDDMEVRNL FT LTINNNELTRRLRACWLKCITNSVICTSGGVLYAQTHPGAQKSGSYNASSSNSRIRVMA FT AFHCGADWAIAMGDDALESPNSNINAYQKLGFKVEVASQLEFCSHVFEQEDLARPLNVN FT KMLYRLIFGYNPACGNAEVLCNYLQAVASVLNELRHDPQLVATLHEWLVPGAATK" FT CDS 2121..>2915 FT /codon_start=1 FT /transl_except=(pos:2709..2711,aa:OTHER) FT /product="putative aphid transmission factor" FT /note="ORF5; produced by translational readthrough of TAG FT stop codon" FT /db_xref="GOA:H9NAD4" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR002929" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:H9NAD4" FT /protein_id="AFF19525.1" FT /translation="MNTGANRSRRNVRRRANRRRQTRPVVVVRAPPGPRRVRRRRARVG FT GNAVRGPGGRSNRDVLTFTVDDLKANSTGILKFGPNLSQYAAFNNGLLKAYHEYKITSL FT TIQYNSCSSDATPGAIALEVDTSCSQTTTGSKITSFPVKRNAKKVFPAPFIRGKDFMTT FT SADQFWLLYKGNGDSSLAGQFVCRFECLFQNPKXVGDAPPTPTPTPTPPAPTPAPAPKY FT FGYQGVPNNIVKTRGNSEYLDVGPLENVTMYLWKDESWSIEQL" FT CDS 2121..2711 FT /codon_start=1 FT /product="coat protein" FT /note="ORF3" FT /db_xref="GOA:Q9QQN7" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q9QQN7" FT /protein_id="AFF19526.1" FT /translation="MNTGANRSRRNVRRRANRRRQTRPVVVVRAPPGPRRVRRRRARVG FT GNAVRGPGGRSNRDVLTFTVDDLKANSTGILKFGPNLSQYAAFNNGLLKAYHEYKITSL FT TIQYNSCSSDATPGAIALEVDTSCSQTTTGSKITSFPVKRNAKKVFPAPFIRGKDFMTT FT SADQFWLLYKGNGDSSLAGQFVCRFECLFQNPK" FT CDS 2152..2604 FT /codon_start=1 FT /product="movement protein" FT /note="ORF4" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:Q9WI47" FT /protein_id="AFF19527.1" FT /translation="MSEDALTVVDRLGQWSWSGLPQDLDEYDDVEHVLEETLCEDREEE FT ATGMFSLSRLTISKPTQPGSSNSDRTYLSTQRSTMAYSKPTMSIKSQVSLFSITHAPPT FT QLQVQSHLKWIHPAPKQQQAPRLLASPSRGTPRKSSRPPSSGGKIS" XX SQ Sequence 2915 BP; 814 A; 791 C; 720 G; 590 T; 0 other; tgattacgcc gaggaggtgt atgagaaaac ccttgcagag cctaaagtgt ggaaacctgc 60 cagcggcaaa tactggtggg aaatggctga agaagaggat gatttcgtcg ttgaggcaaa 120 gtcacctccc cctgacaaac ctgtcgagaa cgctatagca aaagagcaga ctccagctcc 180 gactgtcgag aaagctatgg ttgctgatca gccgactcca gaccagggaa acgagccaag 240 tggcgccgac cacttaaaaa caccggaatc caccccgctc aagcaagacg aatccacaaa 300 agagttgctc aacaacatcg tctcgcagtt gattcaaaag atcgacctga gctccattgc 360 aacgagggtg gaggagaaac tgctgcgtca ggcccagaac aaacagcagc agaccggagg 420 gaagaagtcg cccagaaaac gcaagacctc gaacacttct tccaagccgc atacaaatgg 480 gaagagtcca ccagtgacat cccagggttc aggaaatgcg gcaaactccc cgcgctatac 540 catcccccaa aaccgaagag cacacaatgg ggagagcgca tcatctcaga gcacccagaa 600 atggcgtcca aagtcgccgg tttcgggtgg ccctccttcg gcgcccaagc cgaagagaca 660 agtctgagac tccaagcggc acgctggctt aaacgagctg agtcagcgga aaagccgaca 720 gaaaaacaac gcaagctcgt cattgatcgt gtggtcaagg catatgaacc gtgtagaact 780 aatgccccac acaccagctc ctctggcagc ctcatctggt ccgacttctt gaaagatttc 840 aaggaggctg tcaactcact agaactcgat gcaggaatag gtctcccata caagcttctt 900 cacaaagaca ctcatcgtca gatggttgaa gaccccaaat tcctgccgct cctgacgcga 960 ttgacctgga accgtttaca gaagatgtcc caggttgact tccaggagat gactcctgaa 1020 caactagtga gagaaggatt gtgcgacccg attcgtttgt tcgtcaaagg ggaaccgcac 1080 aagcaggcaa aacttgatga agggcgctac cgcctcatca tgtcagtctc gctggtagat 1140 caactggtag cccgggtttt gtttcaggca caaaacaaaa gagagatagc tttgtggaga 1200 gctatccctt caaagcccgg tttcggctta tccacagaca gggaagcacg cgaattcatc 1260 gaatccctgt ccaagacagt agggtgttcc ccagcagaag tcattcatgg ctggagggac 1320 aagatcgtac ccaccgactg ttccggtttt gactggtcag tcgccgactg gatgctcgaa 1380 gatgacatgg aagtgagaaa tcttctcact atcaacaaca acgagctaac ccgccgcctt 1440 agggcgtgct ggctgaagtg catcacaaac tcggtgattt gcacatccgg cggtgtcttg 1500 tacgcccaaa ctcatcctgg agcgcaaaaa tctggatctt acaacgcgag ttcatccaat 1560 tccaggattc gagtaatggc cgcttttcat tgcggcgcag attgggcgat agccatggga 1620 gacgatgcac ttgagtctcc aaactccaac atcaacgcgt atcaaaagtt ggggttcaaa 1680 gtcgaggttg cctcacagct agaattttgc tcacacgtct ttgagcagga ggacctcgcc 1740 aggccgttga acgtaaacaa aatgctttat cgtttgatct ttggatacaa tccggcctgt 1800 ggcaacgcgg aggtattgtg caattacctc caagctgtgg cttctgttct caatgagctt 1860 cgccatgacc cacagctagt tgctaccctc catgagtggc tggttcctgg cgccgccaca 1920 aaataaatac ggaggggcat cccgagccac cacataggtt gcaagagtgg aacgggaagt 1980 cctatagata agccgcgcga ttctggatta caaacttcta gcgggagttc tcatcggtgt 2040 tctcatcgca atccccctag ttatcatagc ggcttacctg atattcctca aaatcagtgc 2100 acacatccga gcgatagtga atgaatacgg gcgctaaccg ctcacgaagg aatgtcagaa 2160 gacgcgctaa ccgtcgtaga cagactcggc cagtggtcgt ggtccgggct cccccaggac 2220 ctagacgagt acgacgacgt agagcacgtg ttggaggaaa cgctgtgcga ggaccgggag 2280 gaagaagcaa ccgggatgtt ctcactttca cggttgacga tctcaaagcc aactcaaccg 2340 ggatcctcaa attcggaccg aacttatctc agtacgcagc gttcaacaat ggcttactca 2400 aagcctacca tgagtataaa atcacaagtc tcactattca gtataactca tgctcctccg 2460 acgcaactcc aggtgcaatc gcacttgaag tggatacatc ctgctcccaa acaacaacag 2520 gctccaagat tactagcttc cccgtcaaga ggaacgccaa gaaagtcttc ccggccccct 2580 tcatcagggg gaaagatttc atgactacgt cagctgacca gttttggttg ctgtacaaag 2640 ggaatggaga ctcgagccta gcaggacaat tcgtctgccg atttgaatgc cttttccaga 2700 atcccaaata ggtaggcgac gctcccccaa cacccacccc aacaccaacc ccacccgctc 2760 cgaccccggc accggctccc aagtattttg gataccaagg agtgccgaac aacatcgtga 2820 aaacaagagg aaactctgaa tatctagatg tgggtccgct cgaaaatgtg accatgtatc 2880 tttggaaaga tgaatcgtgg agcattgagc aactg 2915 //