ID JQ266226; SV 1; linear; genomic RNA; STD; VRL; 2915 BP. XX AC JQ266226; XX DT 28-MAR-2012 (Rel. 112, Created) DT 09-NOV-2012 (Rel. 114, Last updated, Version 3) XX DE Sugarcane yellow leaf virus isolate CHN-FJ4 multifunctional protein, DE RNA-dependent RNA polymerase, and putative aphid transmission factor genes, DE partial cds; and coat protein and movement protein genes, complete cds. XX KW . XX OS Sugarcane yellow leaf virus OC Viruses; Riboviria; Luteoviridae; Polerovirus. XX RN [1] RP 1-2915 RX DOI; 10.1007/s11262-012-0774-1. RX PUBMED; 22752564. RA Gao S.J., Lin Y.H., Pan Y.B., Damaj M.B., Wang Q.N., Mirkov T.E., RA Chen R.K.; RT "Molecular characterization and phylogenetic analysis of Sugarcane yellow RT leaf virus isolates from China"; RL Virus Genes 45(2):340-349(2012). XX RN [2] RP 1-2915 RA Gao S.-J., Wang Q.-N., Lin Y.-H., Huang X.-D., Chen R.-K.; RT ; RL Submitted (09-DEC-2011) to the INSDC. RL Sugarcane Research Institute, Fujian Agriculture and Forestry, 15 Shangxia RL Dian Rd, Cangshan District, Fuzhou, Fujian 350002, China XX DR MD5; e8ef667e873f3e56011800723517d5b6. XX FH Key Location/Qualifiers FH FT source 1..2915 FT /organism="Sugarcane yellow leaf virus" FT /host="sugarcane cv. FN02-3924" FT /isolate="CHN-FJ4" FT /mol_type="genomic RNA" FT /country="China" FT /collection_date="Nov-2010" FT /db_xref="taxon:94290" FT CDS <1..667 FT /codon_start=2 FT /product="multifunctional protein" FT /note="ORF1" FT /db_xref="GOA:H9NAC7" FT /db_xref="InterPro:IPR000382" FT /db_xref="UniProtKB/TrEMBL:H9NAC7" FT /protein_id="AFF19518.1" FT /translation="DYAEEVYEKTLAEPKVWKPASGKYWWEMAEEEDDFVVEAKSPPPD FT KPVENATAKEQTPAPTVEKAMVADQPTPDQGNEPSGADHLKTPESTPLKQDESTKELLN FT NIVSQLIQKIDLSSIATRVEEKLLRQAQNKQQQNGGKKSPRKRKTSNTSSKPHTNGKNP FT PVISQGSGNAANSPRYTIPQNRRAHNGESASSQSTQKWRPKSPVTGGPPSAPKPKRQV" FT CDS <208..1926 FT /codon_start=1 FT /product="RNA-dependent RNA polymerase" FT /note="ORF2; produced by predicted -1 translational FT frameshift" FT /db_xref="GOA:H9NAC8" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:H9NAC8" FT /protein_id="AFF19519.1" FT /translation="SADSRPGKRAKWRRPLKNTGIHPAQARRIYKRVAQQHRLAVDSKD FT RPELHCNEGGGETAASGPEQTAAERREEVAQKTQDLEHFFQAAYKWEESTSDIPGFRKC FT GKLPALYHPPKPKSTQWGERIISEHPEMASKVAGYGWPSFGAQAEETSLRLQAARWLKR FT AESAEKPTEKQRKLVVDRVVKAYEPCRTNAPHTSSSGSLIWSDFLKDFKEAVNSLELDA FT GIGLPYKLLHKDTHRQMVEDPKFLPLLTRLTWNRLQKMSQVDFQEMTPEQLVREGLCDP FT IRLFVKGEPHKQAKLDEGRYRLIMSVSLVDQLVARVLFQAQNKREIALWRAIPSKPGFG FT LSTDREARDFIESLSKTVGCSPAEVIHGWRNKIVPTDCSGFDWSVADWMLEDDLEVRNL FT LTINNNELTRRLRACWLKCITNSVICTSGGVLYAQTHPGVQKSGSYNTSSSNSRIRVMA FT AFHCGADWAIAMGDDALESPNSNINAYQKLGFKVEVASQLEFCSHVFEQEDLARPLNVN FT KMLYRLIFGYNPACGNAEVLCNYLQAVASVLNELRHDPQLVATLHEWLVPGAATK" FT CDS 2121..>2915 FT /codon_start=1 FT /transl_except=(pos:2709..2711,aa:OTHER) FT /product="putative aphid transmission factor" FT /note="ORF5; produced by translational readthrough of TAG FT stop codon" FT /db_xref="GOA:H9NAC9" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR002929" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:H9NAC9" FT /protein_id="AFF19520.1" FT /translation="MNTGANRSRRNVRRRANRRRQTRPVVVVRAPPGPRRVRRRRARVG FT GNAVRGPGGRSNRDVLTFTVDDLKANSTGILKFGPNLSQYAAFNNGLLKAYHEYKITSL FT TIQYNSCSSDATPGAIALEVDTSCSQTTTGSKITSFPVKRNAKKVFPAPFIRGKDFMTT FT SADQFWLLYKGNGDSSLAGQFVCRFECLFQNPKXVGDAPPTPTPTPTPSAPTPAPAPKY FT FGYQGVPNNIVKTRGNSEYLDVGPLENVTMYLWKDESWSIEQL" FT CDS 2121..2711 FT /codon_start=1 FT /product="coat protein" FT /note="ORF3" FT /db_xref="GOA:Q9QQN7" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q9QQN7" FT /protein_id="AFF19521.1" FT /translation="MNTGANRSRRNVRRRANRRRQTRPVVVVRAPPGPRRVRRRRARVG FT GNAVRGPGGRSNRDVLTFTVDDLKANSTGILKFGPNLSQYAAFNNGLLKAYHEYKITSL FT TIQYNSCSSDATPGAIALEVDTSCSQTTTGSKITSFPVKRNAKKVFPAPFIRGKDFMTT FT SADQFWLLYKGNGDSSLAGQFVCRFECLFQNPK" FT CDS 2152..2604 FT /codon_start=1 FT /product="movement protein" FT /note="ORF4" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:Q9WI47" FT /protein_id="AFF19522.1" FT /translation="MSEDALTVVDRLGQWSWSGLPQDLDEYDDVEHVLEETLCEDREEE FT ATGMFSLSRLTISKPTQPGSSNSDRTYLSTQRSTMAYSKPTMSIKSQVSLFSITHAPPT FT QLQVQSHLKWIHPAPKQQQAPRLLASPSRGTPRKSSRPPSSGGKIS" XX SQ Sequence 2915 BP; 818 A; 781 C; 717 G; 599 T; 0 other; tgattacgcc gaggaggtgt atgagaaaac ccttgcagag cctaaagtgt ggaaacctgc 60 cagcggcaaa tactggtggg aaatggctga agaagaggat gattttgtcg ttgaggcaaa 120 gtcacctccc cctgataaac ctgttgagaa cgctacagca aaagagcaga ctccagctcc 180 gactgtcgag aaagctatgg ttgctgatca gccgactcca gaccagggaa acgagccaag 240 tggcgccgac cacttaaaaa caccggaatc caccccgctc aagcaagacg aatctacaaa 300 agagttgctc aacaacatcg tctcgcagtt gattcaaaag atcgacctga gctccattgc 360 aacgagggtg gaggagaaac tgctgcgtca ggcccagaac aaacagcagc agaacggagg 420 gaagaagtcg cccagaaaac gcaagacctc gaacacttct tccaagccgc atacaaatgg 480 gaagaatcca ccagtgatat cccagggttc aggaaatgcg gcaaactccc cgcgctatac 540 catcccccaa aaccgaagag cacacaatgg ggagagcgca tcatctcaga gcacccagaa 600 atggcgtcca aagtcgccgg ttacgggtgg ccctccttcg gcgcccaagc cgaagagaca 660 agtctgagac tccaagcggc acgctggctt aaacgagctg agtcagcgga aaagccgaca 720 gaaaaacaac gcaagctcgt cgttgatcgt gtggtcaagg catatgaacc gtgtagaact 780 aatgccccac acaccagctc ctctggcagc ctcatctggt ccgacttctt gaaagatttc 840 aaggaggctg tcaactcact agaactcgat gcaggaatag gtctcccata caagcttctt 900 cacaaagaca ctcatcgtca gatggttgaa gaccccaaat tcctgccgct cctgacgcga 960 ttgacctgga accgtttaca gaagatgtcc caggttgatt tccaggagat gactcctgaa 1020 caactagtga gagaaggatt gtgcgatccg attcgtttgt tcgtcaaagg agaaccgcac 1080 aagcaggcaa aacttgatga agggcgctac cgcctcatca tgtcagtctc gctggtagat 1140 caactggtag cccgggtttt gtttcaggca caaaacaaaa gagagatagc tttgtggaga 1200 gctatccctt caaagcccgg tttcggctta tccacagaca gggaggcacg cgatttcatt 1260 gaatccctgt ccaagacagt agggtgttcc ccagcagaag tcattcatgg ctggaggaac 1320 aagatcgtac ccaccgactg ttccggtttt gactggtcag tcgccgactg gatgctcgaa 1380 gacgacttgg aagtgagaaa tcttctcaca atcaacaaca acgagctaac ccgccgcctc 1440 agggcgtgct ggttgaagtg catcacaaac tctgtgattt gcacatccgg cggtgtcttg 1500 tacgcccaaa ctcatcctgg agtgcaaaaa tctggatctt acaacacgag ttcatccaat 1560 tccaggattc gagtaatggc cgcttttcat tgcggcgcag attgggcgat agccatggga 1620 gacgatgcac ttgagtctcc aaactccaac atcaacgcgt atcaaaagtt ggggttcaaa 1680 gtcgaggttg cctcacagct agaattttgc tcacacgtct ttgagcagga ggacctcgcc 1740 aggccgttga acgtaaacaa aatgctttat cgtttgatct ttggatacaa tccggcctgt 1800 ggcaacgcgg aggtattgtg caattacctc caagctgtgg cttctgttct caacgagctt 1860 cgccatgatc cacagctagt tgctaccctc catgagtggc tggtccctgg cgccgccaca 1920 aaataaatac ggaggggcat cccgagccac cacataggtt acaagagtgg aacgggaagt 1980 cctatagata agccgcgcga ttctggatta taaacttcta gcgggagttc ttatcggtgt 2040 tctcatcgca atccccctag tgatcatagc ggcttacctg atattcctca aaatcagtgc 2100 acacatccga gcgatagtga atgaatacgg gcgctaaccg ctcacgaagg aatgtcagaa 2160 gacgcgctaa ccgtcgtaga cagactcggc cagtggtcgt ggtccgggct cccccaggac 2220 ctagacgagt acgacgacgt agagcacgtg ttggaggaaa cgctgtgcga ggaccgggag 2280 gaagaagcaa ccgggatgtt ctcactttca cggttgacga tctcaaagcc aactcaaccg 2340 ggatcctcaa attcggaccg aacttatctc agtacgcagc gttcaacaat ggcttactca 2400 aagcctacca tgagtataaa atcacaagtc tcactattca gtataactca tgctcctccg 2460 acgcaactcc aggtgcaatc gcacttgaag tggatacatc ctgctcccaa acaacaacag 2520 gctccaagat tactagcttc cccgtcaaga ggaacgccaa gaaagtcttc ccggccccct 2580 tcatcagggg gaaagatttc atgactacgt cagctgacca gttttggttg ctgtacaaag 2640 ggaatggaga ctcgagccta gcaggacaat tcgtctgccg atttgaatgc cttttccaga 2700 atcccaaata ggtaggcgac gctcccccaa cacccacccc aacaccaacc ccatccgctc 2760 cgaccccggc accggctcct aagtattttg gataccaagg agtgccgaac aacatcgtga 2820 aaacaagagg aaactctgaa tatctagatg tgggtccgct cgaaaatgtg accatgtatc 2880 tttggaaaga cgaatcgtgg agcattgagc aactg 2915 //