ID   JQ235205; SV 1; linear; genomic RNA; STD; VRL; 1662 BP.
XX
AC   JQ235205;
XX
DT   03-JUL-2012 (Rel. 113, Created)
DT   17-OCT-2012 (Rel. 114, Last updated, Version 2)
XX
DE   Tobacco rattle virus strain Ho segment RNA2b capsid protein and fusion
DE   protein genes, complete cds.
XX
KW   .
XX
OS   Tobacco rattle virus
OC   Viruses; Riboviria; Virgaviridae; Tobravirus.
XX
RN   [1]
RP   1-1662
RX   DOI; 10.1007/s00705-012-1365-0.
RX   PUBMED; 22692679.
RA   Koenig R., Lesemann D.E., Pleij C.W.;
RT   "Tobacco rattle virus genome alterations in the Hosta hybrid 'Green
RT   Fountain' and other plants: reassortments, recombinations and deletions";
RL   Arch. Virol. 157(10):2005-2008(2012).
XX
RN   [2]
RP   1-1662
RA   Koenig R.;
RT   ;
RL   Submitted (05-DEC-2011) to the INSDC.
RL   Institute for Epidemiology and Pathogene Diagnostics, Julius Kuehn
RL   Institute, Messeweg 11, Braunschweig D38104, Germany
XX
DR   MD5; cac43d9a5128e6f2354876341db0ac91.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1662
FT                   /organism="Tobacco rattle virus"
FT                   /segment="RNA2b"
FT                   /host="hosta hybrid 'Green Fountain'"
FT                   /strain="Ho"
FT                   /mol_type="genomic RNA"
FT                   /country="Germany"
FT                   /collection_date="2006"
FT                   /note="deletion recombination mutant"
FT                   /db_xref="taxon:12295"
FT   CDS             449..1039
FT                   /codon_start=1
FT                   /product="capsid protein"
FT                   /db_xref="GOA:Q9YMD2"
FT                   /db_xref="InterPro:IPR001337"
FT                   /db_xref="InterPro:IPR036417"
FT                   /db_xref="UniProtKB/TrEMBL:Q9YMD2"
FT                   /protein_id="AFN02879.1"
FT                   /translation="MGSYGDSFEGKILDDLSQPWCEKHNWADVLRRLSKIKFALQNDRD
FT                   MIPGILEDLTTELPVDEVTRFPLMKIYYSLSKEVMIAIETIHSASSFKRRAEEKNNVNP
FT                   RQRFEADTATTLVTPGGGAIRPAGSGDSALTEDAFSHGKLDDASTAFHKSLAMLKGERL
FT                   KAYTQRGFEKEYGLKWAGSAPATSSGGGKGPVV"
FT   CDS             1085..1426
FT                   /codon_start=1
FT                   /product="fusion protein"
FT                   /db_xref="InterPro:IPR007968"
FT                   /db_xref="UniProtKB/TrEMBL:I6UWF9"
FT                   /protein_id="AFN02880.1"
FT                   /translation="MLGTNDGENVQCVQLGGESAENNCGWFVCVVINDFTFDVYNCCGR
FT                   SHLEKCRKRVEARNREVWKQIQRARKDAFATAKKSHNSKSQKREREFGTPKRFLRDDIP
FT                   FGIDQLFAF"
XX
SQ   Sequence 1662 BP; 463 A; 276 C; 412 G; 511 T; 0 other;
     cctggctggg gtatgtcttt gaacgcagta gaatgtgcta attgacaagt tggagaacgc        60
     ggtagaacgt acttatccga cacagctttt atccctcttc acgacgaggt ttttgtcgat       120
     gtatttttag tttagctaga tcagtaaata aactcttgtc ttctcataca aggaaaacct       180
     gagacgtgtt aactacgaaa gtgtctattt taaaactgtg gaaacgctaa tcggcggttc       240
     tgtggaatcc aaaaacgcca aagtcttcat gattttgtgt gcaagagtgt gtataaagct       300
     ctggtttgaa aaattgaact tgtccttctt acgatcaaaa ccatgtcaag aattgtcgta       360
     tatgagttga acatgtgttc aactacagca tattaataat ctttacactg tctacagtgc       420
     aacctcaggt agctgcattc attgtcagat gggttcgtac ggtgattctt ttgaagggaa       480
     aatcttggat gatttgtctc aaccatggtg tgagaagcac aattgggccg atgtcttaag       540
     aagactgtcg aagatcaagt ttgctttgca aaatgatcgc gacatgattc cggggatttt       600
     ggaagatctg actaccgaac ttcccgttga tgaagttacg cgatttcctt taatgaaaat       660
     ttattactca ctttcgaaag aagtcatgat tgctattgaa acaattcact ctgcttcgtc       720
     gtttaaaagg cgtgctgaag aaaagaacaa tgtgaatcct cgtcaaagat tcgaagctga       780
     tactgcgacc actctcgtga ctccgggtgg tggggctatt cgtcctgctg gttccggtga       840
     ttcggctttg actgaagatg cattttcaca tggtaaactt gatgacgcaa gtacggcttt       900
     tcacaagtct ctagcgatgt tgaaaggtga aagattgaag gcgtatacac aacgtggttt       960
     tgagaaggaa tatggactga agtgggcagg aagtgctccg gcgacctcct ctggaggggg      1020
     taagggaccg gtcgtgtgac tcattgcgaa gccatcgagg aaggttctca gagcgatcgg      1080
     aagtatgtta ggtactaacg atggtgagaa cgttcaatgt gtacaactcg gtggtgagag      1140
     tgcggaaaat aattgtggat ggtttgtctg tgttgttatc aatgatttta cttttgatgt      1200
     gtataattgt tgtggccgta gtcaccttga aaagtgtcgt aagcgtgtcg aagcgagaaa      1260
     tcgagaagtc tggaaacaga ttcaacgagc tcggaaagat gcgtttgcta cagctaaaaa      1320
     gtctcataat tcgaaatccc aaaaaaggga gagagaattt gggacaccaa aaagattttt      1380
     aagagatgat attccgtttg gaattgatca attgtttgct ttttgatttt gtattaaatt      1440
     gttatctgtt tctgtgtata gactgtttga gattggcgct tggccgactc attgtcttac      1500
     cataggggaa cggactttgt ttgtgttgtt attttatttg tattttataa aaattctcag      1560
     tgatctgaaa aggctttatt gccaagagat tgctgggggg tgagtaagta cttttaaagt      1620
     gatgatggtt acaaaggcaa aaggggtaaa acccctcgcc ta                         1662
//