ID JQ235204; SV 1; linear; genomic RNA; STD; VRL; 3171 BP. XX AC JQ235204; XX DT 03-JUL-2012 (Rel. 113, Created) DT 17-OCT-2012 (Rel. 114, Last updated, Version 2) XX DE Tobacco rattle virus strain Ho segment RNA2a capsid protein, putative DE nematode transmission helper protein 9K, putative nematode transmission DE helper protein 2b, and putative nematode transmission helper protein 2c DE genes, complete cds. XX KW . XX OS Tobacco rattle virus OC Viruses; Riboviria; Virgaviridae; Tobravirus. XX RN [1] RP 1-3171 RX DOI; 10.1007/s00705-012-1365-0. RX PUBMED; 22692679. RA Koenig R., Lesemann D.E., Pleij C.W.; RT "Tobacco rattle virus genome alterations in the Hosta hybrid 'Green RT Fountain' and other plants: reassortments, recombinations and deletions"; RL Arch. Virol. 157(10):2005-2008(2012). XX RN [2] RP 1-3171 RA Koenig R.; RT ; RL Submitted (05-DEC-2011) to the INSDC. RL Institute for Epidemiology and Pathogene Diagnostics, Julius Kuehn RL Institute, Messeweg 11, Braunschweig D38104, Germany XX DR MD5; 5ccdf85e7e7b51f771a4c1c8b2298e81. XX FH Key Location/Qualifiers FH FT source 1..3171 FT /organism="Tobacco rattle virus" FT /segment="RNA2a" FT /host="hosta hybrid 'Green Fountain'" FT /strain="Ho" FT /mol_type="genomic RNA" FT /country="Germany" FT /collection_date="2006" FT /db_xref="taxon:12295" FT CDS 449..1039 FT /codon_start=1 FT /product="capsid protein" FT /db_xref="GOA:Q9YMD2" FT /db_xref="InterPro:IPR001337" FT /db_xref="InterPro:IPR036417" FT /db_xref="UniProtKB/TrEMBL:Q9YMD2" FT /protein_id="AFN02875.1" FT /translation="MGSYGDSFEGKILDDLSQPWCEKHNWADVLRRLSKIKFALQNDRD FT MIPGILEDLTTELPVDEVTRFPLMKIYYSLSKEVMIAIETIHSASSFKRRAEEKNNVNP FT RQRFEADTATTLVTPGGGAIRPAGSGDSALTEDAFSHGKLDDASTAFHKSLAMLKGERL FT KAYTQRGFEKEYGLKWAGSAPATSSGGGKGPVV" FT CDS 1085..1330 FT /codon_start=1 FT /product="putative nematode transmission helper protein 9K" FT /db_xref="UniProtKB/TrEMBL:I6UMB4" FT /protein_id="AFN02876.1" FT /translation="MLGTNDGENVQCVQLGGESARGQYTSNHVDLFEVRVLFPEVRLYW FT ARDRMEKLQFQHSRPIEPFEWCLVGGCICVANVLVF" FT CDS 1362..2135 FT /codon_start=1 FT /product="putative nematode transmission helper protein 2b" FT /db_xref="GOA:I6U4X5" FT /db_xref="InterPro:IPR007935" FT /db_xref="UniProtKB/TrEMBL:I6U4X5" FT /protein_id="AFN02877.1" FT /translation="MTTDWVTLWPNDQLFLSDTYQLVWFDETRDKVEHKHFSYQASNDL FT LSIPKSFLSFVDNRLPMCINHKGAVYIKVGTGGDAYYQKFGDLDVSRFNDDFLPQDAHF FT VFNNVVIGDNDDVSKTEELASLKKKNEVLQSEVVTSREHSDAIISKLKLDLVQSKMNYF FT VKVEPGLVLGYGKAGGELTRTIVSIVKTNLVVLGERYVRDSHAWKQMGVLHNIKSGSRY FT VAYTFVEESGVMYITYSIGKLRDMSVEELLSSVAF" FT CDS 2311..2778 FT /codon_start=1 FT /product="putative nematode transmission helper protein 2c" FT /db_xref="UniProtKB/TrEMBL:I6UYS3" FT /protein_id="AFN02878.1" FT /translation="MISWTLGWFRLYLPQGGDGERTLRISWRGTNVYMFGEQVELPTCW FT DNNSWRGSAYRVIRMNHIDYHVRVFYTWLGAMHHCYVWIYYPAGGGISHYRRRLVVDNR FT NNNYASGEEFPFNNVNLLTGVVTQGDLLHGVSLNAGTHLYTFTPTLELRWG" XX SQ Sequence 3171 BP; 871 A; 554 C; 787 G; 959 T; 0 other; cctggctggg gtatgtcttt gaacgcagta gaatgtgcta attgacaagt tggagaacgc 60 ggtagaacgt acttatccga cacagctttt atccctcttc acgacgaggt ttttgtcgat 120 gtatttttag tttagctaga tcagtaaata aactcttgtc ttctcataca aggaaaacct 180 gagacgtgtt aactacgaaa gtgtctattt taaaactgtg gaaacgctaa tcggcggttc 240 tgtggaatcc aaaaacgcca aagtcttcat gattttgtgt gcaagagtgt gtataaagct 300 ctggtttgaa aaattgaact tgtccttctt acgatcaaaa ccatgtcaag aattgtcgta 360 tatgagttga acatgtgttc aactacagca tattaataat ctttacactg tctacagtgc 420 aacctcaggt agctgcattc attgtcagat gggttcgtac ggtgattctt ttgaagggaa 480 aatcttggat gatttgtctc aaccatggtg tgagaagcac aattgggccg atgtcttaag 540 aagactgtcg aagatcaagt ttgctttgca aaatgatcgc gacatgattc cggggatttt 600 ggaagatctg actaccgaac ttcccgttga tgaagttacg cgatttcctt taatgaaaat 660 ttattactca ctttcgaaag aagtcatgat tgctattgaa acaattcact ctgcttcgtc 720 gtttaaaagg cgtgctgaag aaaagaacaa tgtgaatcct cgtcaaagat tcgaagctga 780 tactgcgacc actctcgtga ctccgggtgg tggggctatt cgtcctgctg gttccggtga 840 ttcggctttg actgaagatg cattttcaca tggtaaactt gatgacgcaa gtacggcttt 900 tcacaagtct ctagcgatgt tgaaaggtga aagattgaag gcgtatacac aacgtggttt 960 tgagaaggaa tatggactga agtgggcagg aagtgctccg gcgacctcct ctggaggggg 1020 taagggaccg gtcgtgtgac tcattgcgaa gccatcgagg aaggttctca gagcgatcgg 1080 aagtatgtta ggtactaacg atggtgagaa cgttcaatgt gtacaactcg gtggtgagag 1140 tgcgagagga cagtacactt ctaatcatgt tgatttgttt gaagtgagag tgctttttcc 1200 ggaagtacgg ctttattggg ctcgtgatag gatggagaag ttacaatttc aacattccag 1260 acccattgaa ccattcgagt ggtgtttagt tggtggatgc atttgtgtag ccaatgtgtt 1320 agtcttttga aacataaccg tcaggttttg tttagcatat aatgactaca gattgggtta 1380 cattgtggcc aaacgaccaa ctgtttcttt ccgataccta tcagttagtc tggttcgatg 1440 agacacgtga caaggtggaa cacaagcatt tttcgtacca ggcttctaat gatttgctga 1500 gcataccaaa atcttttcta agttttgttg ataacagatt acctatgtgt ataaatcaca 1560 agggtgctgt atacatcaaa gttggaactg gtggcgacgc ttattatcaa aagttcggtg 1620 atctggacgt gagtagattc aacgacgact ttctacctca ggacgctcac tttgtgttta 1680 acaacgttgt tattggagac aatgatgatg ttagcaaaac tgaagagtta gcctccctta 1740 agaagaaaaa cgaagttcta caaagtgaag ttgttacgag tagagagcac tccgacgcga 1800 ttatcagtaa actgaaatta gacctagtcc aatctaagat gaattatttc gtcaaagttg 1860 agccgggtct ggttctcggt tacggtaaag ctggcggaga gttaactcgg acaatcgtgt 1920 ccattgttaa aacaaacctg gtcgttctag gggagaggta cgttagagac tctcacgctt 1980 ggaaacagat gggagtgttg cacaacatta agtctggaag taggtacgtg gcgtacactt 2040 tcgtagaaga aagtggggtt atgtacatta cttattcgat cggaaaactg agagacatga 2100 gtgttgagga acttcttagt tccgtggcat tttagtctcg tttagtaccg tgggttgatc 2160 acatcaacgg tggcttgcac catagcaagt acagttgtag gaagctgtgt aaataattcc 2220 tgtatcttga tctcatcaag ggtggttgtt accataaaca ataatgttgt aggaagcatt 2280 taaaataatt cctggcttat cgaaatcacg atgatatcct ggacattagg atggtttagg 2340 ctgtacttac cacaaggagg tgacggagag aggactttga ggatcagctg gcgtggaacc 2400 aacgtgtaca tgtttggtga acaggttgaa ctacctacgt gttgggacaa caactcgtgg 2460 cgaggatctg cgtatcgcgt tattaggatg aatcatatag attatcacgt ccgtgtcttc 2520 tacacctggc ttggagcgat gcaccactgt tacgtctgga tatattatcc agcaggcggt 2580 ggaatctccc attaccgtcg ccggttagtg gttgataacc gcaacaataa ttatgcgtct 2640 ggtgaagaat ttccgttcaa taatgtgaat ctgttgaccg gtgtggttac gcaaggtgat 2700 ttgttacatg gagttagcct caacgctggc actcatcttt acacatttac acctacactt 2760 gaactgcgct ggggttaagg tcgtagtttt ataaataagt tgctgagatc gaaaccttct 2820 aagaagaaat tcgaaggggg tagaaaaagt ctcgtcactc gaaagagtac gggacaccaa 2880 aaagattttg agagatgatg ttccatttgg aattgatcaa ttgtttactt tttgattttg 2940 tattgtattg ttattcattc ctgtgtatag actgtttaag attggcattt ggccgactta 3000 ttgtcttacc ataggggagt ggactttgtt tgtgttgtta ttttatttgt attttgttaa 3060 aattctcaac gatctgaaaa ggctttgtgg ccaagagatt gttggggggt gagtaagtac 3120 ttttaaagtg atgatggtta caaaggcaaa aggggttgga cccctcgcct a 3171 //