ID JQ235203; SV 1; linear; genomic RNA; STD; VRL; 6696 BP. XX AC JQ235203; XX DT 03-JUL-2012 (Rel. 113, Created) DT 17-OCT-2012 (Rel. 114, Last updated, Version 2) XX DE Tobacco rattle virus strain Ho segment RNA1 194K replication-associated DE protein 2, 134K replication-associated protein 1, movement protein, DE silencing suppressor protein, and hypothetical protein genes, complete cds. XX KW . XX OS Tobacco rattle virus OC Viruses; Riboviria; Virgaviridae; Tobravirus. XX RN [1] RP 1-6696 RX DOI; 10.1007/s00705-012-1365-0. RX PUBMED; 22692679. RA Koenig R., Lesemann D.E., Pleij C.W.; RT "Tobacco rattle virus genome alterations in the Hosta hybrid 'Green RT Fountain' and other plants: reassortments, recombinations and deletions"; RL Arch. Virol. 157(10):2005-2008(2012). XX RN [2] RP 1-6696 RA Koenig R.; RT ; RL Submitted (05-DEC-2011) to the INSDC. RL Institute for Epidemiology and Pathogene Diagnostics, Julius Kuehn RL Institute, Messeweg 11, Braunschweig D38104, Germany XX DR MD5; bc906b0feeafc04b83bb71566ddfaa7f. XX FH Key Location/Qualifiers FH FT source 1..6696 FT /organism="Tobacco rattle virus" FT /segment="RNA1" FT /host="hosta hybrid 'Green Fountain'" FT /strain="Ho" FT /mol_type="genomic RNA" FT /country="Germany" FT /collection_date="2006" FT /db_xref="taxon:12295" FT CDS 180..5303 FT /codon_start=1 FT /transl_except=(pos:3741..3743,aa:OTHER) FT /product="194K replication-associated protein 2" FT /db_xref="GOA:I6UMB0" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:I6UMB0" FT /protein_id="AFN02871.1" FT /translation="MANGNFKLSQLLNVDEMSAEQRSHFFDLMLTKPDCEIGQMMQRVV FT VDKVDDMLRERKTKDPVIVHEVLSQKEQNKLMEIYPEFNIVFKDDKNMVHGFAAAERKL FT QALLLLDRVPALQEVDDIGGQWSFWVTRGEKRIHSCCPNLDIRDDQREISRQIFLTAIG FT DQARSGKRQMSENELWMYDQFRENITAPNAVRCNNTYQGCTCRGFSDGKKKGAQYAIAL FT HSLYDFKLKDLMSTMVEKKTKVVHAAMLFAPESMLVDEGPLPSVDGYYMKKNGKIYFGF FT EKDPSFSYIHDWEEYKKYLLGKPVSYQGNVFYFEPWQVRGDTMLFSIYRIAGVPRRSLS FT SQEYYRRIYISRWENMVVVPIFDLVESTRELVKKDLFVEKQFMDKCLDYIARLSDQQLT FT ISNVKSYLSSNNWVLFINGAAVKNKQSVDSRDLQLLAQTLLVKEQVARPVMRELREAIL FT TETKPITSLSDVLSLISKKLWKQFANKIAVGGFVGMVATLIGLYPRKVLTWAKDTSSGP FT ELCYENTHKTKVIVFLSVVYAIGGITLMRRDIRDGLVKKLCDMFDIKRGAHVLDVENPC FT RYYEINDFFSSLYSASESGETVLPDLSDVKAKSDKLLQQKKEIADEFLCAKFSNYSGSS FT TRTSPPSVVGSSRSGLGLLLEDSNVLTQARVGVSRKVDDEEIMEQFLSGLIDTEEEIDG FT IVSAFSVECERGETSGTKVLCKPLTPPGFENVLPTVKPLFNKGKTIKSTDYFQVMGGER FT LPKRPVVSGDDSVDARKEFLYYLDAERVAQNDEIMSLYRDYSRGVIRTGGQNYPHGLGV FT WDVEMKNWCIRPVVTEHAYVFQPDKRMDDWSGYLEVAVWERGMLVNNFAVERKSDYVIV FT CDQTYLCNNRLILDNLSALDLGPIDCSFELVDGVPGCGKSTMIVNSANPCVDVVLSTGR FT AATDDLIERFASKGFPCKLKRRVKTVDSFLMHCVDGCLTGDVLHFDEALMAHAGMVYFC FT AQIARAKRCICQGDQNQISFKPRVSQVDLRFSSLVGKFDVVTEKRETYRSPADVAAVLN FT KFYTGDVRTHNATANSMAVRKIVSKEQVSLKPGAQYITFLQSEKKELMNLLALRKVAAK FT VSTVHESQGETFKDVVLVRTKPTDDSIARGREYMIVALSRHTQSLVYETVKEDDVSKEI FT RESAALTKAALARFFVTETVLXRFRSRFDVFRHHEGPCAVPDSGTITDLEMWYDALFPG FT NSLRDSSLDGYLVATTDCNLRLDNVTIKSGNWKDKFAEKETFLKPVIRTAMPDKRKTTQ FT LESLLALQKRNQAAPDLQENVHATVLIEETMKKLKSVVYDVGKIRADPIVNRAQMERWW FT RNQSTAVQAKVVADVRELHEIDYSSYMYMIKSDVKPKTDLTPQFEYSALQTLVYHEKLI FT NSLFGPIFKEINERKLDAMQPHFVFNTRMTSSDLNDRVKFLNTEAAYDFVEIDMSKFDK FT SANRFHLQLQLEIYRLFGLDEWAAFLWEVSHTQTTVRDIQNGMMAHIWYQQKSGDADTY FT NANSDRTLCALLSELPLEKAVMVTYGGDDSLIAFPRGTQFVDPCPKLATKWNFECKIFK FT YDVPMFCGKFLLETSSCYEFVPDPVKVLTKLGKKSIKDVQHLAEIYISLNDSNRALGNY FT MVVSKLSESISDRYLYKGDSVHALCALWKHIKSFTALCTLFRDEKDKELNPAQVDWKKA FT QRAVSNFYDW" FT CDS 180..3743 FT /codon_start=1 FT /product="134K replication-associated protein 1" FT /db_xref="GOA:I6UWF0" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:I6UWF0" FT /protein_id="AFN02870.1" FT /translation="MANGNFKLSQLLNVDEMSAEQRSHFFDLMLTKPDCEIGQMMQRVV FT VDKVDDMLRERKTKDPVIVHEVLSQKEQNKLMEIYPEFNIVFKDDKNMVHGFAAAERKL FT QALLLLDRVPALQEVDDIGGQWSFWVTRGEKRIHSCCPNLDIRDDQREISRQIFLTAIG FT DQARSGKRQMSENELWMYDQFRENITAPNAVRCNNTYQGCTCRGFSDGKKKGAQYAIAL FT HSLYDFKLKDLMSTMVEKKTKVVHAAMLFAPESMLVDEGPLPSVDGYYMKKNGKIYFGF FT EKDPSFSYIHDWEEYKKYLLGKPVSYQGNVFYFEPWQVRGDTMLFSIYRIAGVPRRSLS FT SQEYYRRIYISRWENMVVVPIFDLVESTRELVKKDLFVEKQFMDKCLDYIARLSDQQLT FT ISNVKSYLSSNNWVLFINGAAVKNKQSVDSRDLQLLAQTLLVKEQVARPVMRELREAIL FT TETKPITSLSDVLSLISKKLWKQFANKIAVGGFVGMVATLIGLYPRKVLTWAKDTSSGP FT ELCYENTHKTKVIVFLSVVYAIGGITLMRRDIRDGLVKKLCDMFDIKRGAHVLDVENPC FT RYYEINDFFSSLYSASESGETVLPDLSDVKAKSDKLLQQKKEIADEFLCAKFSNYSGSS FT TRTSPPSVVGSSRSGLGLLLEDSNVLTQARVGVSRKVDDEEIMEQFLSGLIDTEEEIDG FT IVSAFSVECERGETSGTKVLCKPLTPPGFENVLPTVKPLFNKGKTIKSTDYFQVMGGER FT LPKRPVVSGDDSVDARKEFLYYLDAERVAQNDEIMSLYRDYSRGVIRTGGQNYPHGLGV FT WDVEMKNWCIRPVVTEHAYVFQPDKRMDDWSGYLEVAVWERGMLVNNFAVERKSDYVIV FT CDQTYLCNNRLILDNLSALDLGPIDCSFELVDGVPGCGKSTMIVNSANPCVDVVLSTGR FT AATDDLIERFASKGFPCKLKRRVKTVDSFLMHCVDGCLTGDVLHFDEALMAHAGMVYFC FT AQIARAKRCICQGDQNQISFKPRVSQVDLRFSSLVGKFDVVTEKRETYRSPADVAAVLN FT KFYTGDVRTHNATANSMAVRKIVSKEQVSLKPGAQYITFLQSEKKELMNLLALRKVAAK FT VSTVHESQGETFKDVVLVRTKPTDDSIARGREYMIVALSRHTQSLVYETVKEDDVSKEI FT RESAALTKAALARFFVTETVL" FT CDS 5305..6063 FT /codon_start=1 FT /product="movement protein" FT /db_xref="InterPro:IPR028919" FT /db_xref="UniProtKB/TrEMBL:E7CL02" FT /protein_id="AFN02872.1" FT /translation="MEDKSLVTLKKKTFEVSKFSNLGAIELFVDGRRKRPKYFHRRRET FT VLNHVGGKKSEHKLDVFDQRDYKMIKSYAFLKIVGVQLVVTSHLPADTPGFIQIDLLDS FT RLTEKRKKGKTIQRFKARACDNCSVAQYKVEYSISTQENVLDVWKVGCISEGVPVCDGT FT YPFSIEVSLIWVATDSTRRLNVEELNSSDYIEGDFTDQEVFGEFMSLKQVEMKTIEAKY FT DGPYRPATTRPKSLLSSEDVKGASKKKNSS" FT CDS 6088..6498 FT /codon_start=1 FT /product="silencing suppressor protein" FT /db_xref="InterPro:IPR007968" FT /db_xref="UniProtKB/TrEMBL:I6UYR8" FT /protein_id="AFN02873.1" FT /translation="MTCVLKGCVNEVTVLGHETCCIGHANKLRKQVADMVGVTRRCAEN FT NCGWFVCVVINDFTFDVYNCCGRSHLEKCRKRVEARNREVWKQIQRARKDAFATAKKSH FT NSKSQKREREFGTPKRFLRDDIPFGIDQLFAF" FT CDS 6116..6454 FT /codon_start=1 FT /product="hypothetical protein" FT /db_xref="GOA:I6TUA0" FT /db_xref="UniProtKB/TrEMBL:I6TUA0" FT /protein_id="AFN02874.1" FT /translation="MKSLFLVTRRVVLVMLTSCESKLLTWLVSRVGVRKIIVDGLSVLL FT SMILLLMCIIVVAVVTLKSVVSVSKREIEKSGNRFNELGKMRLLQLKSLIIRNPKKGRE FT NLGHQKDF" XX SQ Sequence 6696 BP; 1942 A; 1100 C; 1738 G; 1916 T; 0 other; cgcggtagaa cgtgctaatt ggattttggg gagaacgcgg tagaacgtac ttatctccag 60 cagttttatt ttgtttttct ttttggttta atctatccag cttagtaccg agtgggggaa 120 agtgactggt gtgcctaaaa cctttttctt tgatattttg ttaagttcat acagatacaa 180 tggcaaacgg taacttcaag ttgtctcaat tgcttaatgt ggacgagatg tctgctgagc 240 aaaggagtca cttctttgac ttgatgctga ctaaacctga ttgcgagatc gggcaaatga 300 tgcaaagagt tgttgttgac aaagtcgatg acatgcttag agaaagaaag actaaagatc 360 cggtgattgt tcatgaagtt ctttcgcaga aagaacagaa caaactaatg gaaatttatc 420 ctgaattcaa tatcgtgttc aaagacgaca aaaacatggt tcacgggttt gcggccgcag 480 aacgaaaact acaagcttta ttgcttttag atagggttcc tgctctgcaa gaggttgatg 540 acattggtgg tcaatggtcg ttttgggtta ctagaggtga gaagaggatt cattcctgtt 600 gtccaaatct ggatattcgt gacgatcaga gagaaatttc tcgacaaata tttctaactg 660 caattggcga tcaggccagg agtggtaaga gacagatgtc ggagaacgag ctgtggatgt 720 acgatcaatt tcgagagaat atcaccgcac ctaacgctgt taggtgtaat aatacatatc 780 aaggttgtac atgtagagga ttttctgatg gtaagaagaa aggtgcgcag tatgctattg 840 ctttacatag tttgtatgac ttcaagttga aagacttgat gtctacaatg gttgagaaaa 900 agacaaaagt ggtacatgct gctatgcttt ttgctcctga gagtatgcta gtggacgagg 960 gtccattacc ttctgttgat ggttactaca tgaaaaagaa tgggaagatc tacttcggtt 1020 tcgaaaagga tccttctttt tcttacattc atgattggga agagtacaag aaatatctac 1080 tgggaaagcc agtgagttac caagggaacg tgttctactt cgaaccgtgg caagtgagag 1140 gagatacaat gttattttca atctacagga tagctggagt tccgaggcgg tctctttcat 1200 cacaagagta ctaccgaaga atatatatca gtagatggga aaacatggtt gttgtcccga 1260 ttttcgattt agtcgaatca acgcgagagt tagtcaagaa agacctgttt gtggagaaac 1320 agttcatgga caaatgtttg gactacatag ctaggttgtc tgaccagcag ttaaccataa 1380 gcaatgttaa gtcatacctg agttcaaata actgggtctt attcataaac ggggcggccg 1440 tgaagaacaa gcaaagtgta gattctcgag atttacagtt actggctcaa actttactag 1500 tgaaggaaca agtggcgaga cctgtcatga gagagttgcg tgaagcaatt ctgactgaga 1560 cgaaaccgat cacgtcattg tctgacgtac taagtctaat ctcaaaaaaa ctgtggaaac 1620 agttcgctaa caagattgca gtcggcggat ttgtcggtat ggtcgccaca ttaattggat 1680 tgtatccaag gaaggtgttg acctgggcga aggacacgtc aagcggtccg gaattatgtt 1740 acgaaaacac gcacaaaacc aaggtgatag tatttctgag tgttgtgtat gccattggag 1800 gaatcacgct tatgcgtcga gacatccgag atggactggt gaaaaaacta tgtgatatgt 1860 ttgatattaa acggggggcc catgtcttag acgttgagaa tccgtgccgc tattatgaaa 1920 tcaatgattt ctttagcagt ctgtattcgg cgtctgagtc cggtgagacc gttttgcctg 1980 acctatccga cgtaaaagct aagtctgata agctactaca acaaaagaaa gaaatcgctg 2040 atgagtttct ctgtgcaaaa ttttctaact attctggcag ttcgacgaga acttctccac 2100 cgtcagtggt cggttcatct cgaagtggac tgggtttgtt gttggaagac agtaacgttc 2160 taacccaagc tagagttgga gtttcaagaa aggtagatga tgaggagatc atggagcagt 2220 ttctaagtgg tcttattgac actgaagagg agattgacgg gattgtttca gccttttcgg 2280 ttgaatgtga aagaggggaa acaagcggta caaaggtgtt gtgtaagcct ttaacaccac 2340 caggatttga gaatgtgttg ccaactgtca aacctttgtt taacaaaggt aaaacgatca 2400 aaagtactga ttacttccag gtgatgggag gtgagaggtt accaaaaaga ccggttgtca 2460 gcggagacga ttctgtggat gctagaaagg agttcttgta ctatttagat gcagagagag 2520 ttgctcaaaa tgatgaaatc atgtctctgt atcgtgacta ttcaagagga gttattcgaa 2580 caggaggtca gaattatcca cacggactgg gagtgtggga tgtggagatg aagaactggt 2640 gtatacgtcc agtagtcact gaacatgctt acgtgttcca accagacaaa cgtatggatg 2700 actggtcggg atatttagaa gtggctgtct gggaacgtgg aatgttagtc aacaactttg 2760 cagtcgaacg aaagagtgat tatgtcatag tatgcgatca gacttatctt tgcaataaca 2820 ggttgatctt ggacaattta agtgccctag atctaggacc gatcgactgt tcttttgaat 2880 tagttgatgg tgtacctggt tgtggtaagt cgacaatgat tgtcaactca gctaatccct 2940 gtgtcgatgt agttctttct actggaagag cagcaaccga cgacttgatc gagagatttg 3000 cgagcaaagg ttttccatgc aagttgaagc ggagagtgaa gacggtagac tcttttttga 3060 tgcattgcgt cgatggttgt ttaaccgggg acgtgttgca tttcgatgaa gcgctcatgg 3120 ctcatgctgg tatggtgtac ttctgcgctc aaattgcgag agcaaaaaga tgtatctgtc 3180 aaggagacca aaatcaaatt tccttcaaac caagagtgtc tcaggttgac ctgagattct 3240 cgagtttagt cggaaaattt gatgttgtta ctgaaaaaag agagacgtac agaagtccgg 3300 ccgatgtggc cgcggtgttg aacaagttct atactggaga tgtcagaaca cataacgcaa 3360 ctgctaattc gatggcagtg aggaagattg tgtcgaagga acaggtttct ctgaaacctg 3420 gtgcccaata cataactttc cttcaatctg agaagaagga gttgatgaat ctgttggcat 3480 tgaggaaagt ggcagctaag gtgagcacag tgcacgagtc acaaggagaa acattcaaag 3540 atgtagtcct agttaggacg aaacctacgg atgattcaat tgctagggga cgtgagtaca 3600 tgatcgtggc gttgtcgcgt cacacacaat cgcttgtgta cgagacggtt aaggaggatg 3660 acgtgagcaa agagattaga gaaagtgctg cgcttacaaa ggcggctctg gcaagatttt 3720 tcgttacgga aaccgtctta tgacggtttc ggtctaggtt tgatgttttc agacatcatg 3780 agggaccttg cgctgtccca gattcaggta cgattacgga cttggaaatg tggtatgacg 3840 ctttgtttcc tggaaattca ttaagagact caagcctaga cgggtatctg gtggcaacga 3900 ctgactgcaa cctgcggtta gacaatgtta caattaagag tggaaattgg aaagacaagt 3960 ttgctgaaaa agaaacgttt ctgaaaccag ttattcgtac tgcgatgcct gataaaagga 4020 agactactca gttggagagt ttgttggcat tgcaaaaaag gaaccaagca gcacctgatc 4080 tacaagagaa tgtgcatgca acggtcctga tcgaagagac gatgaagaag ttgaaatcag 4140 ttgtctacga tgtggggaag attcgggctg atcctattgt taacagagct cagatggaga 4200 gatggtggcg gaaccaaagt acagcagttc aggctaaggt ggtagcagac gtgcgagaat 4260 tacatgagat agactattcg tcttacatgt atatgatcaa gtcggatgtg aaacctaaga 4320 ctgatctaac gccgcaattt gaatattctg ctctgcagac tcttgtgtat catgagaagt 4380 tgattaactc gttgtttggt ccaattttca aagagataaa tgaacgcaag ttggatgcta 4440 tgcaaccaca ctttgtgttc aatacaagga tgacgtcgag cgacctaaac gatcgagtga 4500 agtttttaaa cacagaggcg gcttacgact ttgtcgagat agacatgtct aaatttgaca 4560 agtcggcaaa tcgttttcac ttacagttgc agttggagat ctacaggttg tttgggttag 4620 atgagtgggc ggctttcctc tgggaggtgt cgcacactca aactactgtg agagacattc 4680 aaaatggcat gatggcacat atctggtacc aacaaaagag tggagatgct gatacttata 4740 atgcaaattc ggacaggacg ctgtgtgcgc ttctgtctga gttaccgtta gagaaggcag 4800 tcatggttac gtatggtgga gatgattcgt tgatagcgtt tcctagggga acgcaattcg 4860 tcgacccatg tccaaagttg gctactaagt ggaattttga gtgcaagatt tttaagtacg 4920 acgtcccaat gttctgcggg aagtttttac ttgagacgtc gtcatgttac gagtttgtgc 4980 cggatccggt taaagttctg acgaagttgg ggaaaaagag cataaaggat gtgcaacatt 5040 tagctgagat ttacatctca ctgaatgatt ctaatagggc tcttgggaat tatatggttg 5100 tatccaaact ttccgagtct atttcagatc ggtatttgta caagggtgat tctgttcatg 5160 cgctgtgtgc gctatggaag catattaaga gttttacagc tctgtgtaca ttattccggg 5220 acgaaaagga taaggaattg aatccggctc aggttgattg gaagaaagca cagagggccg 5280 tgtcaaactt ttacgactgg taagatggaa gacaagtcat tggttacgct taagaagaag 5340 actttcgaag tttcgaagtt ttcgaactta ggtgctattg agctgtttgt ggatggtagg 5400 agaaagagac cgaagtattt ccatagaaga agagagactg tcctaaatca tgttggtgga 5460 aagaagagtg aacataagtt agacgttttt gatcagaggg actacaaaat gattaaatct 5520 tacgcgtttt tgaagatagt aggtgtgcaa cttgttgtta catcacatct acctgcagat 5580 acgcctgggt ttattcaaat cgatctgttg gattcgagac ttactgagaa aagaaagaag 5640 ggaaagacta ttcagagatt caaagctcga gcttgcgata attgttcagt tgcgcagtac 5700 aaggttgaat acagtatttc tacacaagag aatgtactcg atgtctggaa ggtgggttgt 5760 atttctgaag gcgttccggt ctgtgacggt acataccctt ttagtattga agtgtcgctc 5820 atttgggttg ctactgattc gactaggcgt cttaatgtgg aagaactgaa cagttcagat 5880 tacattgaag gcgattttac cgatcaggag gttttcggtg agttcatgtc tttgaaacaa 5940 gttgagatga agacgattga ggcgaagtat gatggtcctt acagaccagc tactactaga 6000 ccaaaatcat tgttgtcgag tgaagatgtt aagggagcgt ctaaaaagaa aaactcgtct 6060 taatgcataa agaaatttat tgtcactatg acgtgtgtac tcaagggttg tgtgaatgaa 6120 gtcactgttc ttggtcacga gacgtgttgt attggtcatg ctaacaagtt gcgaaagcaa 6180 gttgctgaca tggttggtgt cacgcgtagg tgtgcggaaa ataattgtgg atggtttgtc 6240 tgtgttgtta tcaatgattt tacttttgat gtgtataatt gttgtggccg tagtcacctt 6300 gaaaagtgtc gtaagcgtgt cgaagcgaga aatcgagaag tctggaaaca gattcaacga 6360 gctcggaaag atgcgtttgc tacagctaaa aagtctcata attcgaaatc ccaaaaaagg 6420 gagagagaat ttgggacacc aaaaagattt ttaagagatg atattccgtt tggaattgat 6480 caattgtttg ctttttgatt ttgtattaaa ttgttatctg tttctgtgta tagactgttt 6540 gagattggcg cttggccgac tcattgtctt accatagggg aacggacttt gtttgtgttg 6600 ttattttatt tgtattttat aaaaattctc agtgatctga aaaggcttta ttgccaagag 6660 attgctgggg ggtgagtaag tacttttaaa gtgatg 6696 //