ID JQ231214; SV 1; circular; genomic DNA; STD; VRL; 2774 BP. XX AC JQ231214; XX DT 11-JUN-2013 (Rel. 117, Created) DT 11-JUN-2013 (Rel. 117, Last updated, Version 1) XX DE Tomato yellow leaf curl virus isolate Kermanshah, complete genome. XX KW . XX OS Tomato yellow leaf curl virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2774 RA Gharooni Kardani S., Jafarpour B., Mehrvar M., Heydarnejad J., Tarighi S., RA Zaki Aghl M.; RT "Genetic diversity of TYLCV in Iran"; RL Unpublished. XX RN [2] RP 1-2774 RA Gharooni Kardani S., Jafarpour B., Mehrvar M., Heydarnejad J., Tarighi S., RA Zaki Aghl M.; RT ; RL Submitted (03-DEC-2011) to the INSDC. RL Plant Protection, Ferdowsi University, Azadi Square, Mashhad, Khorasan RL Razavi 9177948978, Iran XX DR MD5; 8916a9305e2585e8f596360502126d77. XX FH Key Location/Qualifiers FH FT source 1..2774 FT /organism="Tomato yellow leaf curl virus" FT /host="Solanum lycopersicum" FT /isolate="Kermanshah" FT /mol_type="genomic DNA" FT /country="Iran" FT /collected_by="Sara Gharoni kardani" FT /collection_date="Sep-2010" FT /db_xref="taxon:10832" FT gene 148..498 FT /gene="V2" FT CDS 148..498 FT /codon_start=1 FT /gene="V2" FT /product="movement protein" FT /db_xref="GOA:Q77PF9" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:Q77PF9" FT /protein_id="AFL03414.1" FT /translation="MWDPLLNEFPESVHGFRCMLAIKYLQSVEETYEPNTLGHDLIRDL FT ISVVRARDYVEATRRYNHFHARLEGSPKAELRQPIQQPCCCPHCPRHKQATIMDVQAHV FT PKAQNIQNVSKP" FT gene 308..1087 FT /gene="V1" FT CDS 308..1084 FT /codon_start=1 FT /gene="V1" FT /product="coat protein" FT /note="Cp protein" FT /db_xref="GOA:Q6PMS6" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:Q6PMS6" FT /protein_id="AFL03415.1" FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYSSRAAVPIVQGTNKRRSW FT TYRPMYRKPRIYRMYRSPDVPRGCEGPCKVQSYEQRDDIKHTGIVRCVSDVTRGSGITH FT RVGKRFCVKSIYFLGKVWMDENIKKQNHTNQVMFFLVRDRRPYGSSPMDFGQVFNMFDN FT EPSTATVKNDLRDRFQVMRKFHATVIGGPSGMKEQALVKRFFKINSHVTYNHQEAAKYE FT NHTENALLLYMACTHASNPVYATMKIRIYFYDSISN" FT gene complement(1081..1485) FT /gene="C3" FT CDS complement(1081..1485) FT /codon_start=1 FT /gene="C3" FT /product="replication enhancer protein" FT /note="REn protein" FT /db_xref="GOA:R9QBS1" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:R9QBS1" FT /protein_id="AFL03418.1" FT /translation="MDSRTGELITAPQAENGVFIWEINNPLYFKITEHSQRPFLMNHDI FT ISIQIRFNHNIRKVMGIHKCFLNFRIWTTLQPQTGHFLRVFRYEVLKYLDSLGVISINN FT VIRAVDHVLYDVLEYTINVTETHDIKYKFY" FT gene complement(1226..1633) FT /gene="C2" FT CDS complement(1226..1633) FT /codon_start=1 FT /gene="C2" FT /product="transcription activator protein" FT /note="TrAP protein" FT /db_xref="GOA:R9QCH8" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:R9QCH8" FT /protein_id="AFL03417.1" FT /translation="MQPSSPSTSHCSQVSIKVQHKVAKKKPIRRKRVDLDCGCSYYLHL FT NCNNHGFTHRGTHHCSSGREWRFYLGDKQSPLFQDNRTQPAAISNEPRHHFHSDKIQPQ FT HQEGNGDSQMFSQLPNLDDITASDWSFLKSI" FT gene complement(1742..2608) FT /gene="C1" FT CDS complement(1742..2608) FT /codon_start=1 FT /gene="C1" FT /product="replication associated protein" FT /note="REP protein" FT /db_xref="GOA:R9QBU8" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:R9QBU8" FT /protein_id="AFL03416.1" FT /translation="MPRLFKIYAKNYFLTYPNCSLSKEAALSQLKNLETPTNKKYIKVC FT RELHENGEPHLHVLIQFEGKYQCKNQRFFDLVSPNRSAHFHPNIQAAKSSTDVKTYVEK FT DGDFIDFGVFQIDGRSARGGQQSANDAYAEALNSGNKSEALNILKEKAPKDYILQFHNL FT SSNLDRIFSPPLEVYVSPFLSSSFNQVPDELEEWVAENVVSSAARPWRPISIVIEGDSR FT TGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFYSRLVYIPC FT KIFITSL" FT gene complement(2164..2457) FT /gene="C4" FT CDS complement(2164..2457) FT /codon_start=1 FT /gene="C4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:K0DDS7" FT /protein_id="AFL03419.1" FT /translation="MGNHISMCLSNSKANTNVRTNGSSTWYPQTDQHISIRTFRQLRAQ FT QMSRPTWKKTETSLILEFSKSMADQLEEVSNLPTTHMPKHSIQAINPRPSIY" XX SQ Sequence 2774 BP; 775 A; 522 C; 599 G; 878 T; 0 other; accggatggc cgtgcctttt ccttttatgt ggtccccacg agggttctac aaacgtcact 60 ttcaaccaat caaattgcat cctcaaacgt tagataagtt ttcatttgtc tttatatact 120 tggtccccaa gtattttgtc ttgcaatatg tgggacccac ttctaaatga atttcctgaa 180 tctgttcacg gatttcgttg tatgttagct attaaatatt tgcagtccgt tgaggaaact 240 tacgagccca atacattggg ccatgattta attagggatc ttatatccgt tgtaagggcc 300 cgtgactatg tcgaagcgac caggcgatat aatcatttcc acgcccgtct cgaaggttcg 360 ccgaaggctg aacttcgaca gcccatacag cagccgtgct gctgtcccca ttgtccaagg 420 cacaaacaag cgacgatcat ggacgtacag gcccatgtac cgaaagccca gaatatacag 480 aatgtatcga agccctgatg ttccccgtgg atgtgaaggc ccatgtaaag tccagtctta 540 tgagcaacgg gatgatatta agcacactgg tattgttcgt tgtgttagtg atgttactcg 600 tggatctgga attactcaca gagtgggtaa gaggttctgt gttaaatcga tatatttttt 660 aggtaaagtc tggatggatg aaaatatcaa gaagcagaat cacactaatc aggtcatgtt 720 ctttttggtc cgtgatagaa ggccctatgg aagcagtcca atggattttg gccaggtttt 780 taatatgttc gataatgagc ccagtaccgc aaccgtgaag aatgatttgc gtgataggtt 840 tcaagtgatg aggaaatttc atgcaacagt tattggtggg ccctctggaa tgaaggaaca 900 ggcattagtt aagagatttt ttaaaattaa cagtcatgta acttataatc atcaggaggc 960 agccaagtac gagaaccata ctgaaaacgc cttgttattg tatatggcat gtacgcatgc 1020 ctctaatcca gtgtatgcaa ctatgaaaat acgcatctat ttctatgatt caatatcaaa 1080 ttaataaaat ttatatttta tatcatgagt ttctgttaca tttattgtgt attcaagtac 1140 atcatacaat acatgatcaa ctgctctgat tacattgtta atggaaatta caccaagact 1200 atctaaatac ttaagaactt catatctaaa tactcttaag aaatgaccag tctgaggctg 1260 taatgtcgtc caaattcgga agttgagaaa acatttgtga atccccatta ccttcctgat 1320 gttgtggttg aatcttatct gaatggaaat gatgtcgtgg ttcattagaa atggccgctg 1380 gctgtgttct gttatcttga aatagagggg attgtttatc tcccagataa aaacgccatt 1440 ctctgcctga ggagcagtga tgagttcccc tgtgcgtgaa tccatgattg ttgcagttga 1500 ggtggaggta gtatgagcag ccacagtcta ggtctacacg cttacgcctt attggtttct 1560 tcttggctac cttgtgttgg accttgattg atacttgcga acagtggctc gtagagggtg 1620 acgaaggttg cattcttgag agcccaattt ttcaaggata tatttttttc ttcgtctaga 1680 tattctctat atgaggaggt aggtcctgga ttgcagagga agatagtggg aattcttata 1740 attacaaact ggtaatgaaa attttacaag gaatgtagac taacctactg tagaattcct 1800 tgaagtgctt taaataatgc gggtctacgt catcaatgac gttgtaccac gcatcattac 1860 tgtacacctt tgggcttagg tctagatgtc cacataaata attatgtggg cctagagacc 1920 tggcccacat tgttttccct gttctgctat caccctcaat tacaatactt atgggtctcc 1980 atggccgcgc agcggaagac acgacgttct cagcgaccca ctcttcaagt tcatctggaa 2040 cttgattaaa agaagaagaa agaaatggag aaacataaac ttctaaagga ggactgaaaa 2100 tcctatctaa atttgaactt aaattatgaa attgtaaaat atagtccttt ggggccttct 2160 cttttaatat attgagggcc tcggatttat tgcctgaatt gagtgcttcg gcatatgcgt 2220 cgttggcaga ttgctgacct cctctagctg atctgccatc gatttggaaa actccaaaat 2280 caatgaagtc tccgtctttt tccacgtagg tcttgacatc tgttgagctc ttagctgcct 2340 gaatgttcgg atggaaatgt gctgatctgt ttggggatac caggtcgaag aaccgttggt 2400 tcttacattg gtatttgcct tcgaattgga taagcacatg gagatgtggt tccccattct 2460 cgtggagttc tctgcaaact ttgatgtatt ttttatttgt tggggtttct aggtttttta 2520 attgggaaag tgctgcctct ttagagagag aacaattggg atatgttagg aaataatttt 2580 tggcatatat tttaaataaa cgaggcatgt tgaaatgaat cggtgtccct caaatctcta 2640 tggcaatcgg tgtatcggtg tcttacttat acctggacac ctaatggcta tttggtaatt 2700 tcgcaaaagt acattgtaat tccaaattca aaattcaaaa atcaaatcat taaagcggcc 2760 atccgtataa tatt 2774 //