ID JQ071374; SV 1; linear; genomic RNA; STD; VRL; 3730 BP. XX AC JQ071374; XX DT 14-APR-2013 (Rel. 116, Created) DT 14-APR-2013 (Rel. 116, Last updated, Version 1) XX DE Grapevine fanleaf virus isolate Shir-Amin segment RNA2, complete sequence. XX KW . XX OS Grapevine fanleaf virus OC Viruses; Riboviria; Picornavirales; Secoviridae; Comovirinae; Nepovirus. XX RN [1] RP 1-3730 RA Nourinejhad Zarghani S., Shams-Bakhsh M., Sokhandan Bashir N., Wetzel T.; RT "Molecular Characterization of Whole Genomic RNA2 From Iranian Isolates of RT Grapevine Fanleaf Virus"; RL J. Phytopathol. 0:0(2013). XX RN [2] RP 1-3730 RA Nourinejhad Zarghani S., Shams-Bakhsh M., Sokhandan Bashir N., Wetzel T.; RT ; RL Submitted (24-NOV-2011) to the INSDC. RL Plant Pathology, Tarbiat Modares University, Jalal Ale Ahmad Highway, RL Tehran P.O.Box: 14115-111, Iran XX DR MD5; 396a8af0bf6a71fa9cba6d6eac5baade. XX FH Key Location/Qualifiers FH FT source 1..3730 FT /organism="Grapevine fanleaf virus" FT /segment="RNA2" FT /host="grapevine" FT /isolate="Shir-Amin" FT /mol_type="genomic RNA" FT /country="Iran" FT /isolation_source="leaf" FT /collection_date="May-2009" FT /db_xref="taxon:12274" FT CDS 202..3537 FT /codon_start=1 FT /product="P2 polyprotein" FT /db_xref="GOA:M9NIE2" FT /db_xref="InterPro:IPR005054" FT /db_xref="InterPro:IPR005305" FT /db_xref="InterPro:IPR005306" FT /db_xref="InterPro:IPR021081" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:M9NIE2" FT /protein_id="AFI43911.1" FT /translation="MGKFYYSNRRLACWAAGKNPHLGGSVEQRLAAINTDPSFRQTVKE FT DVQENRLEPTAIRMFSWKVGSGPIDNPEKPDWRYVLTGIPAGPSQPVKADEVVVVSQPK FT KKVIPPPPSPPAPYFRAVGAFAPTRSGFIRATVERLTREREESRAAALFAELPLEYPQG FT APLKLSMDMKFAALKHATWRKWYDTSDERLQNAHPGGPSLPPPLLQIQSTLPSFKERVR FT VFLERKSCSRAFSLETSLGLNRAWVGTVDIPSTSVCCADGRTTGGQTIAQEADPLQHRV FT SSSVAPGRAEWISERRQALRRREQANSLQGLAAQTDMTFEQARNAYLGAADMIEQGLPL FT LPPLRSAYAPRGLWRGPSTRANYTLDFRLNGIPTGANTLEIMYNPVSEEEMDEYRDRGM FT SAVVIDALEIAINPFGMPGNPTDLTVVATYGHERDMTRAFIGSASTFLGNGLARAIFFP FT GLQYSQEEPRRESIIRLYVASTNATVDTDSVLAAISVGTLRQHVGSMHYRTVASTVHQA FT QVQGTTLRATMMGNTVVVSPEGSLVVGTPEARVEIGGGSSVRMVVPLQWESVEEPGHTF FT SIRSRSRSVRIDRNVDLPQLEAEPRLSSTVRGLAGRGVIYIPKDCQANRYLGTLNIRDM FT ITDFKGVQYEKWITAGLVMPIFKIVVRLPANAFTGLTWVMSFDAHNRITSRITASADPV FT YTLSVPHWLIHHKLGTFSCEVDYGELCGHAMWFKSTTFESPRLHFTCLTGNNKELAADW FT QAVVELYTELEEATSFLGKPTLVFDPGVFDGKFKFLTCPPIFFDLTAVTALKSAGLTLG FT QVPMVGTTKVYNLNSTLVSCVLGMGGTIKGKVHICAPIFYSIVLWVVSEWNGTTMDWNE FT LFKYPGVYVVADGSFEVKIRSPYHRTPARLLAGQNQRDMSSLNFYAIAGPIAPSGETAR FT LPIVVQIEEIVRPDLSLPSFEDDYFVWVDFSEFTHDKEEIEIGSRFFDFTSSTCRVSMG FT ENPFAAMIACHGLHSGILDLKFQWSLNTEFGKSSGSVTITRLVGDKALGLDGPSQVFAL FT QRLEGTAELLIGNFAGANPNSHFSLYSRWMAIKLDQARSMKVLRVLCKPRPGFSFYGRT FT SFPV" XX SQ Sequence 3730 BP; 908 A; 799 C; 956 G; 1067 T; 0 other; atgaaaagtg gatcacactc caagagtttg ggaaactcaa aagtgatact tgccaagagt 60 ttaagaaact caccaagcga agagtttaag aaactcatta ttgctttttc cttctcttac 120 tttgcgcttt atttgtttag cattttattg agtttgttta aaaagctttt gttttgtttt 180 cctttttcgt gttttgcccc tatgggcaaa ttttactatt ccaacaggcg tctggcctgt 240 tgggcagctg gaaagaaccc ccatctgggg ggttctgttg agcaacggct ggcggccatt 300 aatactgatc cctccttccg ccaaactgtt aaggaggatg tccaagagaa caggctggaa 360 cctacagcca tcaggatgtt ctcctggaaa gtgggttcgg ggcccattga caaccccgaa 420 aaacctgact ggcggtatgt cctcacgggc atccctgccg ggccgtccca gccggttaaa 480 gctgatgagg ttgtggtggt gtcacaaccg aagaagaagg tgattccccc acctccttct 540 cccccagctc cctactttag ggctgttggg gcttttgcac caacccggtc cgggtttatt 600 cgggccactg tggaaagact tacccgggaa cgggaagagt cgagagctgc ggcactcttt 660 gccgaacttc cattggagta tccccagggg gctcctctga agttgagcat ggacatgaaa 720 tttgctgcgc tcaagcatgc cacttggagg aagtggtatg acactagtga tgagcgtctt 780 cagaacgctc atcctggtgg acccagtttg cctcctcccc tcctccaaat ccaaagcacc 840 cttccctcct ttaaggagag ggttagggtt tttctagaaa gaaagtcctg ctctagggct 900 ttttccctag aaacctccct aggtcttaat agggcctggg tgggtactgt agacatcccc 960 agcacttctg tgtgctgtgc ggatggtcga actaccggtg ggcaaacaat tgcccaggaa 1020 gctgatccct tgcaacatag ggtcagctca agcgtagccc ccggtagggc ggaatggatc 1080 tcagagcgta gacaagctct gaggagaaga gagcaagcaa atagcttgca gggtcttgct 1140 gctcaaacag atatgacatt tgagcaggcc aggaatgctt atcttggtgc tgcagacatg 1200 attgagcaag gcctaccact gcttccccct ctacgcagcg cttatgcccc taggggctta 1260 tggaggggac cctccaccag agccaattac acgttggact tcaggctcaa tggtataccg 1320 accggggcaa atacgttgga aatcatgtat aatcccgtgt ctgaagaaga aatggacgag 1380 taccgggata gaggtatgtc ggctgtggtg attgatgcgc tagaaatagc catcaaccct 1440 tttggcatgc ctggaaatcc aacggacttg actgttgtag cgacatatgg gcatgagcga 1500 gatatgacgc gtgcctttat tggttctgct tccacgtttt tggggaatgg gttagcgaga 1560 gctattttct ttcctggatt acaatatagc caggaggaac caaggcgcga atcaattatt 1620 cgcctgtatg ttgcttccac aaacgccaca gtggatactg attcagtttt ggcggccatc 1680 agtgttggta ctttacgcca acatgttggt tccatgcatt atcgaacggt ggctagtact 1740 gtgcatcaag cccaggtgca aggtacgact cttagggcta ccatgatggg taacactgtt 1800 gtggtatctc ctgaaggaag tcttgttgtt ggaactcccg aggcacgtgt cgaaataggg 1860 ggtggctcta gcgtcaggat ggtggtacct ttacaatggg agagtgtgga ggaaccgggg 1920 cataccttct ctattagaag tcgctcacgc tctgtgagga ttgacagaaa tgttgatctt 1980 cctcagcttg aggccgagcc tagattaagc tcgaccgtga gaggattagc tggtagagga 2040 gttatctata ttcccaagga ttgccaggca aacaggtact taggcaccct gaacatacgc 2100 gatatgatta cagatttcaa gggtgttcag tatgaaaagt ggataactgc aggtttagtc 2160 atgcccattt ttaaaatcgt tgtcaggcta cctgcaaatg cctttactgg gttgacatgg 2220 gtaatgagtt ttgatgctca caaccggata actagtagga ttactgctag cgctgatcct 2280 gtgtataccc tatctgtccc gcattggctt attcaccaca agttgggcac gttttcatgt 2340 gaagtcgact acggagaatt gtgtggacat gctatgtggt ttaaatctac cacatttgaa 2400 tctccgaggt tgcatttcac ctgtttaacg ggcaacaaca aagagttagc ggcagactgg 2460 caagctgtcg tggaacttta taccgagctt gaagaggcca cgtcttttct tgggaaaccc 2520 acgttggtat ttgatccagg ggttttcgat ggcaaattca agtttttaac ttgccctccc 2580 attttctttg atttaacggc cgtcacagct ctgaagagtg ctgggctaac attgggacaa 2640 gtcccaatgg ttggtaccac aaaggtttat aacttaaata gcactcttgt gagttgtgtt 2700 ttgggaatgg ggggtactat taaggggaag gtacacatat gtgcaccgat cttttatagt 2760 attgtgttgt gggtcgttag tgagtggaac gggaccacta tggactggaa tgaattgttc 2820 aaatatcccg gggtgtatgt ggttgctgat gggagctttg aagttaaaat ccgctctcca 2880 tatcaccgaa cacctgctag attgcttgct ggacagaatc agagggatat gagttctctc 2940 aatttttatg caatagcagg acccatagct ccgtcgggtg aaaccgcacg acttccaatc 3000 gttgtacaaa tagaagaaat tgtgcgccct gatttatcct tgccaagttt tgaagatgat 3060 tattttgtat gggtggattt ttctgaattt actcatgaca aggaggaaat tgagattgga 3120 tctcgtttct tcgacttcac ttcaagcact tgcagggtat cgatgggaga aaatcccttt 3180 gctgcgatga tcgcttgtca tggattgcac agtggtatat tggacctcaa atttcaatgg 3240 agtctaaata ctgaatttgg caagagcagc gggagcgtca ctattacaag gttagttggt 3300 gacaaagccc tgggcttgga cgggccatca caggtttttg ctctccaaag gttagaggga 3360 actgcagagt tgttgatagg gaattttgca ggtgcaaatc cgaactcaca tttctctctc 3420 tatagccgat ggatggcaat taaactggac caagcaagga gtatgaaggt actccgagtt 3480 ttgtgtaaac cgcgtccagg cttcagtttt tatggaagaa ccagctttcc agtctagggt 3540 atctgacttt aaaagaccca tttatcatgt atattgtgtt attgtttgtt taaactagtc 3600 tcttttaccg cttttgtgtg tttaatttca tgcttttagt ggcgacagtg tgttgtttgt 3660 cctttggaca cacttgcctt gttggacgca aaaagatttt aattttcttt ttaatgtttt 3720 gcaaatttat 3730 //