ID   JQ070394; SV 1; linear; genomic RNA; STD; VRL; 1083 BP.
XX
AC   JQ070394;
XX
DT   15-APR-2012 (Rel. 112, Created)
DT   15-APR-2012 (Rel. 112, Last updated, Version 1)
XX
DE   Pata virus isolate CAF1968/01 segment 9, complete sequence.
XX
KW   .
XX
OS   Pata virus
OC   Viruses; Riboviria; Reoviridae; Sedoreovirinae; Orbivirus.
XX
RN   [1]
RC   Publication Status: Online-Only
RP   1-1083
RX   PUBMED; 22438872.
RA   Belaganahalli M.N., Maan S., Maan N.S., Nomikou K., Pritchard I., Lunt R.,
RA   Kirkland P.D., Attoui H., Brownlie J., Mertens P.P.;
RT   "Full Genome Sequencing and Genetic Characterization of Eubenangee Viruses
RT   Identify Pata Virus as a Distinct Species within the Genus Orbivirus";
RL   PLoS One 7(3):E31911-E31911(2012).
XX
RN   [2]
RP   1-1083
RA   Belaganahalli M.N., Maan S., Maan N.S., Nomikou K., Mertens P.P.C.;
RT   ;
RL   Submitted (22-NOV-2011) to the INSDC.
RL   Vector-borne Viral Diseases Programme, Institute for Animal Health,
RL   Pirbright laboratory, Ash Road Pirbright, Woking, Surrey GU24 0NF, United
RL   Kingdom
XX
DR   MD5; b7980abccfc71aa8f2b252d2ed44d50d.
XX
CC   GenBank Accession Numbers JQ070386-JQ070395 represent the complete
CC   genome of Pata virus isolate CAF1968/01.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1083
FT                   /organism="Pata virus"
FT                   /segment="9"
FT                   /host="Aedes palpalis"
FT                   /isolate="CAF1968/01"
FT                   /mol_type="genomic RNA"
FT                   /country="Central African Republic"
FT                   /collected_by="J.P. Digoutte and F.X. Pajot"
FT                   /collection_date="1968"
FT                   /db_xref="taxon:1170506"
FT   CDS             15..1037
FT                   /codon_start=1
FT                   /product="VP6"
FT                   /note="helicase; Hel"
FT                   /db_xref="GOA:H9ZXT0"
FT                   /db_xref="InterPro:IPR001399"
FT                   /db_xref="UniProtKB/TrEMBL:H9ZXT0"
FT                   /protein_id="AFH41527.1"
FT                   /translation="MSAVVLLAPGDVIRSIQTELKDRQISYNIKPWEEAKNESKKEEVA
FT                   ETADKEEGGKGKEEEEKDVKREETKDTTSKGSEEKKGEDAEKKATGSKEEKSDAPKSQE
FT                   ASIRNVDGFISAEVGFGGGSGKASKDETAADHGRRGKATGRDKNDAGRASGDGNPGQWV
FT                   VATEEIARLIETRLNTNVQVFDKEIHTKLVNIERGLQKELGFTKEMGAEQTEIIRSIKN
FT                   LNRGKGDQNKRGKGKEEKTTQLSPRIEIEDVLSVKKLTTLIGGKERTHEVIKARETSVS
FT                   LVSNDVADVPNATAYFTAPTGDTNWKEVARLASTKSNIMAYSSDGKDAARELIHLIDHL
FT                   "
XX
SQ   Sequence 1083 BP; 420 A; 161 C; 305 G; 197 T; 0 other;
     gtaaaaaatt gcacatgtca gctgttgtcc tgctcgcgcc cggtgacgtg atccggtcaa        60
     ttcaaacgga gttaaaagat cgacaaattt catataatat aaaaccttgg gaggaagcaa       120
     aaaacgaatc taaaaaagaa gaggtagcgg agacagcaga taaggaagag ggtgggaaag       180
     ggaaagaaga ggaagagaaa gacgtaaaga gagaggaaac aaaggacacc acatcaaaag       240
     gaagtgaaga gaagaaagga gaagatgccg agaagaaggc gaccggcagc aaggaggaaa       300
     agagcgatgc gccaaagagt caagaagctt caattcgaaa tgtggatgga ttcatatctg       360
     ctgaggtggg atttggagga ggcagcggaa aagctagcaa agacgagaca gcagcagatc       420
     acggacgaag aggaaaggct acaggaagag ataagaatga tgcaggaaga gctagcggag       480
     atggaaatcc tggacaatgg gtggtagcga cggaagaaat cgcgcgtctt attgaaacaa       540
     gattaaatac aaatgtgcag gtatttgata aagaaattca cactaaatta gttaacattg       600
     aaagaggttt acaaaaagaa cttgggttta caaaggagat gggtgcggaa caaacagaaa       660
     taatcagaag tataaaaaat ttaaataggg gaaagggaga tcaaaataaa cggggaaagg       720
     gtaaggagga gaaaacaaca caacttagtc caagaattga aattgaggat gtattgagtg       780
     ttaagaaatt aacaactcta attggcggga aggagagaac gcatgaagtt atcaaagctc       840
     gtgaaacatc ggtgtcatta gtttcgaatg atgttgcgga tgtgccaaat gctacagctt       900
     acttcacggc gccaacgggt gataccaatt ggaaagaggt cgctagactg gcttcaacaa       960
     agagtaacat aatggcttac agtagcgatg gaaaggatgc agcgcgagaa ttgatccatc      1020
     tgattgatca cctctaaagg gaccagcacc agcagtatgg cactggggca atttacaact      1080
     tac                                                                    1083
//