ID   JQ070393; SV 1; linear; genomic RNA; STD; VRL; 1159 BP.
XX
AC   JQ070393;
XX
DT   15-APR-2012 (Rel. 112, Created)
DT   15-APR-2012 (Rel. 112, Last updated, Version 1)
XX
DE   Pata virus isolate CAF1968/01 segment 8, complete sequence.
XX
KW   .
XX
OS   Pata virus
OC   Viruses; Riboviria; Reoviridae; Sedoreovirinae; Orbivirus.
XX
RN   [1]
RC   Publication Status: Online-Only
RP   1-1159
RX   PUBMED; 22438872.
RA   Belaganahalli M.N., Maan S., Maan N.S., Nomikou K., Pritchard I., Lunt R.,
RA   Kirkland P.D., Attoui H., Brownlie J., Mertens P.P.;
RT   "Full Genome Sequencing and Genetic Characterization of Eubenangee Viruses
RT   Identify Pata Virus as a Distinct Species within the Genus Orbivirus";
RL   PLoS One 7(3):E31911-E31911(2012).
XX
RN   [2]
RP   1-1159
RA   Belaganahalli M.N., Maan S., Maan N.S., Nomikou K., Mertens P.P.C.;
RT   ;
RL   Submitted (22-NOV-2011) to the INSDC.
RL   Vector-borne Viral Diseases Programme, Institute for Animal Health,
RL   Pirbright laboratory, Ash Road Pirbright, Woking, Surrey GU24 0NF, United
RL   Kingdom
XX
DR   MD5; 3546b2d3fd32ca2a1ee396f24e3541cc.
XX
CC   GenBank Accession Numbers JQ070386-JQ070395 represent the complete
CC   genome of Pata virus isolate CAF1968/01.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1159
FT                   /organism="Pata virus"
FT                   /segment="8"
FT                   /host="Aedes palpalis"
FT                   /isolate="CAF1968/01"
FT                   /mol_type="genomic RNA"
FT                   /country="Central African Republic"
FT                   /collected_by="J.P. Digoutte and F.X. Pajot"
FT                   /collection_date="1968"
FT                   /db_xref="taxon:1170506"
FT   CDS             18..1064
FT                   /codon_start=1
FT                   /product="VP7"
FT                   /note="major core protein; T13"
FT                   /db_xref="GOA:H9ZXS9"
FT                   /db_xref="InterPro:IPR001803"
FT                   /db_xref="InterPro:IPR008935"
FT                   /db_xref="InterPro:IPR008980"
FT                   /db_xref="InterPro:IPR023176"
FT                   /db_xref="InterPro:IPR023178"
FT                   /db_xref="UniProtKB/TrEMBL:H9ZXS9"
FT                   /protein_id="AFH41526.1"
FT                   /translation="MDAIAARALTILRACATLQETRATIDSSVMEVLGIAINRYNGLTQ
FT                   HAVTMRPTSQEQRNEMFFMCIDMMLAAANVNVGMISADYVQNLGTIGVLATPEIPYSIE
FT                   AANDLARITGEVTTWGPDRQPNGYFIEAENVTQPGKYVQAAGHVITVRNVDSRIIQVSL
FT                   NNGARGDIQAAFQGPDAVMIYFVWRRIATFSNAQGNSVNSPQGLTLAVGGVDMRPGRIV
FT                   AWDGQNPITVHNPGNAPAMIQIEVVWYLSLDKTLCQYPSLHEQMYNVYSFRDPIWHGLR
FT                   AAILNRTTLPNLLPPIFPPNDRDNVLILVLLASLADVYSVLKPNFTLFGINPLPGPINR
FT                   AIARAAYQ"
XX
SQ   Sequence 1159 BP; 337 A; 235 C; 273 G; 314 T; 0 other;
     gttaaaattc cttcaagatg gatgcgatcg cagcgagagc cctaacgatt ttgagagcat        60
     gtgcgacatt acaagaaacg agagctacta tagattcaag tgtaatggaa gtgcttggta       120
     tagcgataaa tagatataac ggattaacgc agcatgcggt gacaatgaga cctacatcac       180
     aggagcagcg aaacgaaatg ttttttatgt gcattgatat gatgttagca gcggcaaatg       240
     taaatgtcgg aatgatatca gcagattatg ttcaaaattt gggcacaatt ggcgtcttag       300
     cgacacctga aattccatat tcaattgagg cggccaatga tctcgcgaga ataacaggcg       360
     aagttacgac atggggccca gatcgacaac caaatggcta cttcatcgaa gcagagaatg       420
     ttacgcagcc ggggaaatac gttcaagctg caggccatgt gattacagta cgaaatgtcg       480
     attctaggat tatccaggtt tccttaaaca atggggcccg aggtgatatt caggccgcat       540
     ttcaaggacc ggatgcagta atgatctact ttgtatggag aagaatagcg actttttcga       600
     acgcgcaagg taattcagtt aattcgccac agggattgac tttggcggta ggtggtgtag       660
     atatgcgtcc aggacgaatt gtagcgtggg atggacagaa cccaatcact gtgcataatc       720
     ctgggaatgc acctgcaatg atacaaattg aggtggtttg gtacttatct ttagacaaaa       780
     cactctgcca gtaccctagt cttcatgaac aaatgtataa cgtctattct tttcgtgacc       840
     caatatggca tggattacgt gctgccattt taaatagaac gacattgcca aacttactac       900
     ctccgatctt tcctccaaat gatcgtgata atgtattaat tctcgtgcta ttagcttcat       960
     tagctgatgt ttatagcgta cttaaaccaa actttacgct gttcggaata aatccactgc      1020
     ctggtcctat taatagggct atcgcgcgtg ccgcgtacca gtgatcaacg cagcttgcac      1080
     ggtgctgtgc actggacgca cgcatcattg ttgtagtgaa cgtgtccact atttatacgt      1140
     tttggggaat cacacttac                                                   1159
//