ID   JQ070392; SV 1; linear; genomic RNA; STD; VRL; 1177 BP.
XX
AC   JQ070392;
XX
DT   15-APR-2012 (Rel. 112, Created)
DT   15-APR-2012 (Rel. 112, Last updated, Version 1)
XX
DE   Pata virus isolate CAF1968/01 segment 7, complete sequence.
XX
KW   .
XX
OS   Pata virus
OC   Viruses; Riboviria; Reoviridae; Sedoreovirinae; Orbivirus.
XX
RN   [1]
RC   Publication Status: Online-Only
RP   1-1177
RX   PUBMED; 22438872.
RA   Belaganahalli M.N., Maan S., Maan N.S., Nomikou K., Pritchard I., Lunt R.,
RA   Kirkland P.D., Attoui H., Brownlie J., Mertens P.P.;
RT   "Full Genome Sequencing and Genetic Characterization of Eubenangee Viruses
RT   Identify Pata Virus as a Distinct Species within the Genus Orbivirus";
RL   PLoS One 7(3):E31911-E31911(2012).
XX
RN   [2]
RP   1-1177
RA   Belaganahalli M.N., Maan S., Maan N.S., Nomikou K., Mertens P.P.C.;
RT   ;
RL   Submitted (22-NOV-2011) to the INSDC.
RL   Vector-borne Viral Diseases Programme, Institute for Animal Health,
RL   Pirbright laboratory, Ash Road Pirbright, Woking, Surrey GU24 0NF, United
RL   Kingdom
XX
DR   MD5; fb35faca543b712b483ce34d331b0ba2.
XX
CC   GenBank Accession Numbers JQ070386-JQ070395 represent the complete
CC   genome of Pata virus isolate CAF1968/01.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1177
FT                   /organism="Pata virus"
FT                   /segment="7"
FT                   /host="Aedes palpalis"
FT                   /isolate="CAF1968/01"
FT                   /mol_type="genomic RNA"
FT                   /country="Central African Republic"
FT                   /collected_by="J.P. Digoutte and F.X. Pajot"
FT                   /collection_date="1968"
FT                   /db_xref="taxon:1170506"
FT   CDS             20..1132
FT                   /codon_start=1
FT                   /product="NS2"
FT                   /note="inclusion body protein; ViP"
FT                   /db_xref="GOA:H9ZXS8"
FT                   /db_xref="InterPro:IPR007602"
FT                   /db_xref="InterPro:IPR037194"
FT                   /db_xref="UniProtKB/TrEMBL:H9ZXS8"
FT                   /protein_id="AFH41525.1"
FT                   /translation="MEQKPRRFTKTICVYDPSGRTICGKVAKEKRDPYAIIKLGRVFSL
FT                   KSADGPQPKSYVLEISRPGAYRIQDGQDTISLMIEENGVEGTTERWEEWKFETLNPMPM
FT                   ATMIRHNGQMVDAELKYCKGMGMIEPYTKNDFDRKEMPALPGVEQSKYEVRELRQKIRE
FT                   EREAQAKGLLPQPRDMRVREEEQMQRAQEVVRQEKTSYKWEDDIDFDQPKDTQVRKDFD
FT                   EERHRQEQRAQRRNEQNERDEELHRKLEAFEQNILNKAEKMEQIVEEVSEESEEEEVVE
FT                   SYITAEYIERMSKQQKTKDERFMSYAQMMPQAQGDFDRILVTKKVKWDNVPLFIVNESR
FT                   KAYELQAIGECVRVVFAVKGTNLLILPAGV"
XX
SQ   Sequence 1177 BP; 418 A; 179 C; 320 G; 260 T; 0 other;
     gtaaaaaatt ccttgtatca tggagcaaaa accaagaaga tttacaaaaa ctatttgtgt        60
     atacgatcca agtggacgta caatatgcgg caaggtggct aaagagaaaa gagatcccta       120
     tgcaataatc aagttgggaa gggtgttcag cttaaagtcg gcagatggtc cgcaaccaaa       180
     atcatatgtt ttagaaattt cacgacctgg tgcatatcgt attcaagatg gacaggatac       240
     gataagcttg atgattgagg agaatggagt tgaaggaacg acagaaagat gggaggagtg       300
     gaaatttgaa acattaaatc caatgccaat ggcaacgatg atcagacata atggtcaaat       360
     ggttgatgcg gaattaaaat attgtaaagg gatggggatg attgagcctt acactaagaa       420
     tgactttgat cgaaaggaga tgccagcgct tccgggtgta gagcaatcaa aatatgaagt       480
     gcgtgaacta agacaaaaga ttcgggagga gagagaagcg caagccaaag gactgctacc       540
     tcaaccccgc gacatgcggg tgagggagga agagcagatg cagcgtgcac aggaggtggt       600
     gagacaggaa aaaactagtt ataagtggga agatgatatt gattttgatc aacccaagga       660
     cacgcaggtt cggaaagact ttgatgaaga acgacatcgg caggaacaac gagcacaaag       720
     acgtaacgaa cagaatgagc gggacgaaga gttacatcgt aagttagagg cttttgagca       780
     gaatatcctt aataaagcag aaaagatgga acaaatcgtt gaagaggtta gtgaagaatc       840
     agaagaggaa gaagtcgttg aatcttatat cacggcagaa tatattgaac gtatgagcaa       900
     acagcaaaag actaaagatg aaagattcat gagctatgca cagatgatgc cacaggcgca       960
     gggtgatttc gatcggattt tggttacaaa gaaggtaaaa tgggataacg ttccactgtt      1020
     tattgtcaat gagtcgagaa aagcatatga attacaggca attggagaat gcgttcgtgt      1080
     ggtttttgcc gtaaagggta cgaacttact cattcttcca gcaggtgtct aagatgctga      1140
     tcgtagctgg cgggtaaggg acggaattta cacttac                               1177
//