ID   JQ070391; SV 1; linear; genomic RNA; STD; VRL; 1644 BP.
XX
AC   JQ070391;
XX
DT   15-APR-2012 (Rel. 112, Created)
DT   15-APR-2012 (Rel. 112, Last updated, Version 1)
XX
DE   Pata virus isolate CAF1968/01 segment 6, complete sequence.
XX
KW   .
XX
OS   Pata virus
OC   Viruses; Riboviria; Reoviridae; Sedoreovirinae; Orbivirus.
XX
RN   [1]
RC   Publication Status: Online-Only
RP   1-1644
RX   PUBMED; 22438872.
RA   Belaganahalli M.N., Maan S., Maan N.S., Nomikou K., Pritchard I., Lunt R.,
RA   Kirkland P.D., Attoui H., Brownlie J., Mertens P.P.;
RT   "Full Genome Sequencing and Genetic Characterization of Eubenangee Viruses
RT   Identify Pata Virus as a Distinct Species within the Genus Orbivirus";
RL   PLoS One 7(3):E31911-E31911(2012).
XX
RN   [2]
RP   1-1644
RA   Belaganahalli M.N., Maan S., Maan N.S., Nomikou K., Mertens P.P.C.;
RT   ;
RL   Submitted (22-NOV-2011) to the INSDC.
RL   Vector-borne Viral Diseases Programme, Institute for Animal Health,
RL   Pirbright laboratory, Ash Road Pirbright, Woking, Surrey GU24 0NF, United
RL   Kingdom
XX
DR   MD5; 29fe041ca8d21099ddf0b2869f21ad15.
XX
CC   GenBank Accession Numbers JQ070386-JQ070395 represent the complete
CC   genome of Pata virus isolate CAF1968/01.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1644
FT                   /organism="Pata virus"
FT                   /segment="6"
FT                   /host="Aedes palpalis"
FT                   /isolate="CAF1968/01"
FT                   /mol_type="genomic RNA"
FT                   /country="Central African Republic"
FT                   /collected_by="J.P. Digoutte and F.X. Pajot"
FT                   /collection_date="1968"
FT                   /db_xref="taxon:1170506"
FT   CDS             29..1612
FT                   /codon_start=1
FT                   /product="VP5"
FT                   /db_xref="GOA:H9ZXS7"
FT                   /db_xref="InterPro:IPR000145"
FT                   /db_xref="UniProtKB/TrEMBL:H9ZXS7"
FT                   /protein_id="AFH41524.1"
FT                   /translation="MGKFINALSKVGKKVSNVLTSNTAQKVYKTIGKAAERFAESEVGS
FT                   AAIDGLIQGSVQSLITGESYGETVKQAVLLNVLGAGETLPDPLSPGEQGLQRKVKDLEE
FT                   EQRSEMVRLKYEDKVIAKYGNDIKKVYEYVSKVSAAEELEEDQMEILEKAMVTYGKVIE
FT                   SEEEGLDRLRAALRKEAKDRSVNEIKMVKEYRSKIDALSDAIEVEREGMQEEALQEIAG
FT                   MTADVLESAAEEVPIFGGGAAAAIATARAIEGAYKLKQVIGALSGIDLSHMTTPRIQPE
FT                   TLEMILSNDEISEVDDKALVRGVDSKLQIVLDNKREIEHMITEILPKIKEAAEEDRQEY
FT                   EFPRNQLHPKTAMRFKIPHTQQPLIHTYAAPWDSDEVFLFHCISHHHLNESFLLAFDLA
FT                   LEYVMYEDLTGHWHALGRAQEVQGRSFREAYQEFLNLSSKIPGASLIHQRRLQRSIRVH
FT                   PIFLGSLHYDISFEKLRYNARRLAVDNELQLHVLRGPLHFQRRAILGALKYGVKILGQE
FT                   IDIPQFLSNA"
XX
SQ   Sequence 1644 BP; 536 A; 270 C; 433 G; 405 T; 0 other;
     gttaaaagat ctatctgttg catagaatat ggggaaattt atcaacgcgt tgtccaaagt        60
     tggcaaaaag gtgagtaacg ttttaacttc aaatacagct cagaaggtct ataaaacgat       120
     aggaaaagca gccgaaagat tcgctgaaag tgaagtggga tcagcggcaa tagacgggct       180
     aatacaaggt agcgtacaat ccttaataac gggagaatcg tatggcgaga cggtcaaaca       240
     ggctgtactg ttaaatgtgt taggggccgg tgaaacatta ccagatccgt taagtccagg       300
     cgaacaaggt ctacagcgga aagtgaaaga tttggaagaa gagcagagaa gtgagatggt       360
     acgtcttaag tacgaagata aagtcattgc aaaatatggg aatgacatca agaaagttta       420
     tgagtacgtt tcaaaagttt cagcggcaga ggagcttgag gaagatcaaa tggaaatact       480
     tgagaaggcg atggtgacat acggaaaagt aattgaaagt gaagaggaag gattggatcg       540
     gctaagagca gcgttacgga aagaggcaaa agatcgtagt gtgaatgaga ttaagatggt       600
     gaaagaatat cgatctaaaa ttgatgcgct gagcgacgcg atcgaagttg agcgtgaagg       660
     tatgcaggaa gaggcactgc aggaaatcgc gggtatgacg gcggatgtgt tggaatccgc       720
     tgcagaggaa gtgccgattt ttggaggtgg ggcagcagcc gcaatcgcaa ccgcacgagc       780
     gatagaagga gcatataagt taaagcaggt cattggagcg ttatctggta ttgatctatc       840
     acacatgacc acacctagga tacagcctga gactctagag atgattcttt ctaatgatga       900
     aatttcagag gtagacgata aggcgcttgt acgtggcgtc gattcgaaat tacaaattgt       960
     acttgacaat aaaagagaga ttgagcatat gatcacggag attttgccaa aaataaagga      1020
     agcagcggaa gaagacagac aggagtacga atttccgaga aatcaattac atccaaaaac      1080
     agcaatgcgt ttcaaaattc cacatactca acaaccactt atccacacgt atgctgcgcc      1140
     atgggattct gatgaagttt tccttttcca ttgtatttca catcatcatc taaatgaatc      1200
     ttttcttcta gcgtttgatc tagcattaga gtatgtaatg tatgaagatt taacggggca      1260
     ttggcatgcg ttggggaggg cgcaagaagt gcagggtcgg agcttcagag aggcgtatca      1320
     agagtttttg aatttatctt cgaagattcc tggggcgagt ctaatccatc aaagacgtct      1380
     gcaacgctcg attagagtac atccgatctt tttagggagt ttacattatg atataagttt      1440
     tgaaaaattg agatacaacg cacggcggtt ggcggttgat aatgaattac aattgcacgt      1500
     tctgcgtggt ccattgcatt ttcagcgtcg cgcgatcttg ggggcattaa aatatggtgt      1560
     aaaaatttta ggacaagaga ttgatatacc ccaattctta agtaacgcgt gatggcggtg      1620
     caccacataa gatcttacac ttac                                             1644
//