ID   JQ070389; SV 1; linear; genomic RNA; STD; VRL; 1982 BP.
XX
AC   JQ070389;
XX
DT   15-APR-2012 (Rel. 112, Created)
DT   15-APR-2012 (Rel. 112, Last updated, Version 1)
XX
DE   Pata virus isolate CAF1968/01 segment 4, complete sequence.
XX
KW   .
XX
OS   Pata virus
OC   Viruses; Riboviria; Reoviridae; Sedoreovirinae; Orbivirus.
XX
RN   [1]
RC   Publication Status: Online-Only
RP   1-1982
RX   PUBMED; 22438872.
RA   Belaganahalli M.N., Maan S., Maan N.S., Nomikou K., Pritchard I., Lunt R.,
RA   Kirkland P.D., Attoui H., Brownlie J., Mertens P.P.;
RT   "Full Genome Sequencing and Genetic Characterization of Eubenangee Viruses
RT   Identify Pata Virus as a Distinct Species within the Genus Orbivirus";
RL   PLoS One 7(3):E31911-E31911(2012).
XX
RN   [2]
RP   1-1982
RA   Belaganahalli M.N., Maan S., Maan N.S., Nomikou K., Mertens P.P.C.;
RT   ;
RL   Submitted (22-NOV-2011) to the INSDC.
RL   Vector-borne Viral Diseases Programme, Institute for Animal Health,
RL   Pirbright laboratory, Ash Road Pirbright, Woking, Surrey GU24 0NF, United
RL   Kingdom
XX
DR   MD5; 8a466532814059f423fa81b9800568da.
XX
CC   GenBank Accession Numbers JQ070386-JQ070395 represent the complete
CC   genome of Pata virus isolate CAF1968/01.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1982
FT                   /organism="Pata virus"
FT                   /segment="4"
FT                   /host="Aedes palpalis"
FT                   /isolate="CAF1968/01"
FT                   /mol_type="genomic RNA"
FT                   /country="Central African Republic"
FT                   /collected_by="J.P. Digoutte and F.X. Pajot"
FT                   /collection_date="1968"
FT                   /db_xref="taxon:1170506"
FT   CDS             8..1942
FT                   /codon_start=1
FT                   /product="VP4"
FT                   /note="Cap; guanylyltransferase and methyltransferase;
FT                   capping enzyme"
FT                   /db_xref="GOA:H9ZXS5"
FT                   /db_xref="InterPro:IPR007753"
FT                   /db_xref="UniProtKB/TrEMBL:H9ZXS5"
FT                   /protein_id="AFH41522.1"
FT                   /translation="MPEPHAVIYTTKELEPLIKGSFLPVWELSGEESLNELWIQNGKYS
FT                   SDVYCCGPIKRWTYRQLRGHGFIFVSTEKMIQLADISHFVDIRIPKVILSSKDVKKFET
FT                   EIGRKRLKMRKMFGDILRRYALLKAIELHGSEAETLNQANPRVHEVYGLPEIPPHYDEF
FT                   VTNYDAFEDEPTDEKLVSMLDYLMYSAEEVHYVGSGDGRTLELFRKRSPERFNRAIWHL
FT                   YDPIAPQTTHNNVFVHRAKVEDKRILLSNMNMLKRVERLLIWDVSSDRERKTDTEWESE
FT                   RFGQDRLGEEIAYELSGAFALALIKHRVPQLRDTYNCISSIIFPQPSAPREMYELRNLL
FT                   NLRGYSHVNREHIPSARTIEVRVNRLRDLVEKFHGIHRGKKLKKQLYEYIHIMYKNGLR
FT                   AEGEQTRADLFYLTNSQNFGRWREIKEVILKSQIATLWVGRAPLFDYNDYVVDRAQAML
FT                   ELSTRETRVLDGNGAVLYLIWKYPEIFKRGLTYDPAWAMNFVVTLREPIPHPAVPDVSL
FT                   CRFIGLRVESSLLRLRNPRLHEIADELKKIGLDVSGHLYVTLMSGAYATDLYWWFYMIM
FT                   MWSPQGRENKISDLKASKSEVIEWKDEMADKPWHLRPDLIAALKEYDFKTRIKGMAPID
FT                   RWIDLLHSL"
XX
SQ   Sequence 1982 BP; 627 A; 335 C; 489 G; 531 T; 0 other;
     gtaaaatatg cctgagccgc acgcagtgat ctacaccaca aaggaattgg agccattaat        60
     aaagggtagc ttcttacctg tctgggaatt aagtggggaa gaaagtttga atgaattatg       120
     gatacagaac ggaaaatatt caagtgatgt gtattgttgt ggtccgataa aacgttggac       180
     atatcgccag ctacgaggtc acggcttcat atttgtgagc acggagaaga tgatccagtt       240
     agcagacatt tcacattttg tcgatatccg aattccaaaa gtaatcttat caagcaaaga       300
     tgtgaaaaaa tttgagacag agattggccg taaaaggctt aaaatgcgaa agatgtttgg       360
     cgatatatta cggcgttatg cattacttaa agcaattgag ttacatggaa gcgaggccga       420
     aacattgaat caggcaaacc caagagttca tgaagtttac gggttaccag agatcccacc       480
     acattatgat gagttcgtaa caaactatga tgctttcgag gatgagccaa cagacgaaaa       540
     gttggtgtca atgctagatt atctaatgta tagtgcagaa gaggttcatt atgttgggag       600
     cggagatggt cgcacacttg aacttttcag aaagagatcg ccggaacgat tcaatagagc       660
     aatctggcac ttgtatgatc cgatcgcgcc gcaaaccact cataacaacg ttttcgtgca       720
     tagggcgaaa gttgaggata aacgcattct actttcgaat atgaacatgc ttaaacgtgt       780
     tgaacggctt ttaatttggg atgtatcaag tgatcgcgaa cggaaaacgg atacggagtg       840
     ggaaagtgag cgttttgggc aagataggct tggggaagag atcgcatatg aattatcggg       900
     ggccttcgca cttgcgctaa ttaaacacag agtgccacag ctgcgagaca cttacaactg       960
     tatatcctcg ataattttcc cacaacccag cgcaccaaga gaaatgtatg aattgaggaa      1020
     tttattaaat ttacgcggat attcacatgt caacagagaa catataccgt cagctagaac      1080
     gatagaagtg cgagtaaata gattgcgtga tttagtagag aaatttcatg ggatacatag      1140
     gggcaaaaaa ctgaaaaaac aactatatga atatatccat ataatgtata agaatggatt      1200
     gagagcagag ggcgagcaga cgcgcgctga tcttttctat ttaaccaatt cacagaattt      1260
     tgggagatgg cgtgagatta aagaagtaat tctaaaatca caaatcgcga ctttatgggt      1320
     tggacgtgct ccattattcg actacaatga ttatgttgtt gatagagcac aagcgatgtt      1380
     ggagcttagt acaagggaga cccgagtgtt agatggaaac ggagcagttt tatacttgat      1440
     ttggaaatac ccggagattt tcaagcgtgg tctaacgtac gatccggcgt gggcgatgaa      1500
     tttcgttgtt acgttacgtg aaccaatccc acatcctgca gttccagatg tcagcttgtg      1560
     tcgatttatc ggtttaagag tcgagtcctc actattgagg cttcgtaatc caaggcttca      1620
     tgagattgca gatgaattga aaaagattgg cttagatgtt tctggtcatt tatatgtcac      1680
     tctaatgtca ggtgcttacg caacggattt atactggtgg ttctatatga taatgatgtg      1740
     gtcgccgcaa ggacgggaga ataaaatttc agatttaaag gcgtcaaaaa gtgaagtgat      1800
     tgaatggaag gatgagatgg cggataaacc ttggcatttg cgccctgatt tgattgctgc      1860
     gctgaaagaa tatgatttta aaacgagaat taaaggcatg gctcctatcg atagatggat      1920
     tgatcttctg cattccctgt gatcagtgac atgtagggaa acggagggca tataaacctt      1980
     ac                                                                     1982
//