ID JQ070388; SV 1; linear; genomic RNA; STD; VRL; 2770 BP. XX AC JQ070388; XX DT 15-APR-2012 (Rel. 112, Created) DT 15-APR-2012 (Rel. 112, Last updated, Version 1) XX DE Pata virus isolate CAF1968/01 segment 3, complete sequence. XX KW . XX OS Pata virus OC Viruses; Riboviria; Reoviridae; Sedoreovirinae; Orbivirus. XX RN [1] RC Publication Status: Online-Only RP 1-2770 RX PUBMED; 22438872. RA Belaganahalli M.N., Maan S., Maan N.S., Nomikou K., Pritchard I., Lunt R., RA Kirkland P.D., Attoui H., Brownlie J., Mertens P.P.; RT "Full Genome Sequencing and Genetic Characterization of Eubenangee Viruses RT Identify Pata Virus as a Distinct Species within the Genus Orbivirus"; RL PLoS One 7(3):E31911-E31911(2012). XX RN [2] RP 1-2770 RA Belaganahalli M.N., Maan S., Maan N.S., Nomikou K., Mertens P.P.C.; RT ; RL Submitted (22-NOV-2011) to the INSDC. RL Vector-borne Viral Diseases Programme, Institute for Animal Health, RL Pirbright laboratory, Ash Road Pirbright, Woking, Surrey GU24 0NF, United RL Kingdom XX DR MD5; 0bedd502e67c9db6d7f9b02cc1b3852a. XX CC GenBank Accession Numbers JQ070386-JQ070395 represent the complete CC genome of Pata virus isolate CAF1968/01. XX FH Key Location/Qualifiers FH FT source 1..2770 FT /organism="Pata virus" FT /segment="3" FT /host="Aedes palpalis" FT /isolate="CAF1968/01" FT /mol_type="genomic RNA" FT /country="Central African Republic" FT /collected_by="J.P. Digoutte and F.X. Pajot" FT /collection_date="1968" FT /db_xref="taxon:1170506" FT CDS 18..2717 FT /codon_start=1 FT /product="VP3" FT /note="inner core protein; T2" FT /db_xref="GOA:H9ZXS4" FT /db_xref="InterPro:IPR002614" FT /db_xref="InterPro:IPR016029" FT /db_xref="UniProtKB/TrEMBL:H9ZXS4" FT /protein_id="AFH41521.1" FT /translation="MSAVPDAQVPQPSAYLKGEQLTADNGPLLSIFALQEIMQKVRQAQ FT SDYVAATKETDLTIPDVQNIIEGVKKLAEEQAYKIVDRPIVSFRYIVMQSREHFLRVNT FT YYERMSEVGDSMVENEPEKFYATIMKKVRHLREEGSFVLHNIKTRDHRGMEIADPEILG FT VDIKNILPVLTAEHRAMIQNILDGAIIENGNVATRDVDIFLGACSEPLFRVYNRLQGYI FT EAVNLQDLRAAMEWLERLGRRKRVVFSQEYLTDFRRADTIWLLTLRLPIDPNVIWDVPR FT CGVANLIMNIALCLPTGEYVSPNPRISSITLTQRITTTGPFAILTGSTPTAQQLNDVRK FT IYLALMFPGQVILDLRVDPGERMDPAVRMVAGVVGHLMFTAGRRFTNITQNMARQLDVA FT LNDFLLYMYNARIPVRYGPTGEPLDFQIGRAQYDCNVFRANFQNGTGYNGWGVVDIENR FT VPGPYDHVQRFLRYCNIDSRELINPTTYGIGMQYHVYDEMLRMLVAGGKDSEAAYLRQM FT LPFHMVRFARINQIVNEDLYSAFSLPDAQFDALLPNMLAGAHDGFEPVVLDISWISIWF FT AFNRSFEPTRRNELLEVAPLIESVYASELSVMKTDMQHMALLQRRFPDALVEARPTHFW FT KAVLDVTSQSIRDLMNLAHSHDFINIRDMMRWINQPAMQDSMKLVLEREAWAAANDFED FT LMLVDQVFMHRDMLPEPRLDDIDRFRQEGYYYTNMLEGPPDIRRVVQYTYEVARLQANM FT GQFRAALRRIMDDEGWVRFGGVLRTVKLKFFDSRPPEDVLQNLPFKYETNEKGGLSYAT FT IKYATEAVAYYLIYNVEYSNTPDSLVLINPTYTMTKVYINKMIVERVRVGQILALLNRR FT FVAYKGKMRIMDITQALKVGTKLAAPTV" XX SQ Sequence 2770 BP; 821 A; 495 C; 670 G; 784 T; 0 other; gttaaatttc cgttgcgatg agtgccgttc cagatgcaca agtaccacaa ccttcagcct 60 atctaaaagg agaacagtta accgccgata atggaccact tttatcgata ttcgcattac 120 aagaaattat gcagaaagta cgtcaggcgc aaagtgatta tgtagcggcg acgaaagaga 180 cagatctaac aattccagat gttcaaaaca taattgaagg tgtcaagaag ctggccgaag 240 aacaggcgta taaaattgtt gatcgaccta ttgtgtcctt caggtatatt gtcatgcaat 300 cccgagagca tttcctaagg gtgaatacat actatgagcg gatgtcagaa gtgggtgatt 360 caatggtaga aaatgaaccc gaaaaattct atgcgacgat aatgaagaaa gttcgacatt 420 tgagggagga aggttcgttt gtgttacata atattaaaac cagagatcat agaggtatgg 480 agatcgcaga tccagagata ttaggtgttg acattaaaaa tattttgcct gtgttgacgg 540 ctgaacatcg tgcgatgatt cagaacattt tagatggagc gattattgaa aatggcaacg 600 tagcaacgcg tgatgtcgat atatttcttg gtgcatgctc tgaaccacta tttcgtgttt 660 acaaccgatt acaaggatac attgaagcgg ttaatctaca agatttacgc gctgctatgg 720 agtggctaga acgattaggg agaaggaaac gcgtagtatt ttcacaagaa tatttgacgg 780 attttcgacg agcagatacg atatggctgt taactctgag acttccgatt gacccaaatg 840 taatctggga tgttccaaga tgcggagttg caaatttaat tatgaatatt gcactatgcc 900 tacctacggg tgagtatgtt tcgcctaatc cacggatttc atcgattact ttgacacaac 960 gtattacaac aactggacct tttgcgatct tgactggttc aactcctact gcgcaacaat 1020 taaatgatgt tcgtaaaata tatctagcgc taatgttccc agggcaagtt atcttagatt 1080 tgagagtcga tccaggtgaa cgaatggatc cagcagtgag gatggtagca ggtgtagtcg 1140 gccatttgat gtttaccgct ggaaggcgat ttactaacat tacgcaaaat atggctcggc 1200 agctggatgt ggcgttaaac gatttccttt tatatatgta taacgcgcgg attccagtta 1260 ggtacggacc gacgggtgaa cccttggatt ttcaaattgg acgagcgcag tatgattgta 1320 acgtttttcg cgcaaatttt cagaatggta ctggatataa cggatgggga gtagttgaca 1380 tcgagaatcg cgttcccgga ccatatgatc atgttcaacg ttttttgcgt tattgtaata 1440 tagattcgcg tgagctgatt aatccaacaa catatggaat tggaatgcaa tatcatgtgt 1500 atgacgaaat gctaaggatg ctagttgcgg gtggtaagga ttctgaagca gcatatctac 1560 gccagatgtt gcctttccat atggtgcgtt ttgcacgcat aaaccaaata gttaatgaag 1620 acttatattc tgctttttca ttgccggatg cgcaatttga tgcactactg ccgaatatgc 1680 tcgctggtgc tcatgatgga ttcgaacccg tagttctcga cataagttgg atttcaattt 1740 ggtttgcttt taataggagc ttcgaaccaa caaggaggaa tgagctgttg gaagtggccc 1800 cattaataga gtcggtttac gcttcagaac tttcagtgat gaagacagac atgcaacaca 1860 tggcgctttt acagaggcgt tttccggacg cattggtcga agcgcgacca acacatttct 1920 ggaaagcagt attagatgtg acctctcagt cgattcgaga tttgatgaac ctggcgcatt 1980 ctcatgattt tatcaatatt cgggacatga tgagatggat taatcagcca gctatgcaag 2040 attccatgaa gttagtctta gaaagagagg cgtgggctgc ggcgaatgat tttgaagatc 2100 tgatgttagt agatcaagtt tttatgcacc gcgatatgct tccagagccg aggttagacg 2160 atattgatcg gttccgacag gagggatatt attatactaa catgttagag gggccccctg 2220 acatcaggag agttgtacaa tatacttatg aagtggcgcg attacaagca aatatggggc 2280 aattcagagc agcattacga cgcattatgg atgatgaggg gtgggtgcgt tttggaggag 2340 tcttaaggac agttaagctg aagttttttg attctagacc acccgaagat gtattgcaaa 2400 atttaccttt caagtatgaa actaacgaga aaggcgggtt aagctatgca acaattaagt 2460 atgcaacaga agcggtggca tattacttaa tttataatgt tgaatattca aatacaccag 2520 attctctcgt tttgataaac ccaacgtata cgatgacgaa ggtttacatt aataaaatga 2580 ttgtcgaacg tgtgcgtgtg ggccagattt tggcgttact aaataggcgt ttcgtagcgt 2640 ataaaggcaa aatgcggatt atggatatca cacaagcatt gaaagttggc actaagcttg 2700 cagcccccac agtttaaatg gaattgcgac cacccattta tctgcaggac tgcgcgggaa 2760 taacacttac 2770 //