ID JQ070387; SV 1; linear; genomic RNA; STD; VRL; 2941 BP. XX AC JQ070387; XX DT 15-APR-2012 (Rel. 112, Created) DT 15-APR-2012 (Rel. 112, Last updated, Version 1) XX DE Pata virus isolate CAF1968/01 segment 2, complete sequence. XX KW . XX OS Pata virus OC Viruses; Riboviria; Reoviridae; Sedoreovirinae; Orbivirus. XX RN [1] RC Publication Status: Online-Only RP 1-2941 RX PUBMED; 22438872. RA Belaganahalli M.N., Maan S., Maan N.S., Nomikou K., Pritchard I., Lunt R., RA Kirkland P.D., Attoui H., Brownlie J., Mertens P.P.; RT "Full Genome Sequencing and Genetic Characterization of Eubenangee Viruses RT Identify Pata Virus as a Distinct Species within the Genus Orbivirus"; RL PLoS One 7(3):E31911-E31911(2012). XX RN [2] RP 1-2941 RA Belaganahalli M.N., Maan S., Maan N.S., Nomikou K., Mertens P.P.C.; RT ; RL Submitted (22-NOV-2011) to the INSDC. RL Vector-borne Viral Diseases Programme, Institute for Animal Health, RL Pirbright laboratory, Ash Road Pirbright, Woking, Surrey GU24 0NF, United RL Kingdom XX DR MD5; 34abedea8fb04340f3eef38ba7784384. XX CC GenBank Accession Numbers JQ070386-JQ070395 represent the complete CC genome of Pata virus isolate CAF1968/01. XX FH Key Location/Qualifiers FH FT source 1..2941 FT /organism="Pata virus" FT /segment="2" FT /host="Aedes palpalis" FT /isolate="CAF1968/01" FT /mol_type="genomic RNA" FT /country="Central African Republic" FT /collected_by="J.P. Digoutte and F.X. Pajot" FT /collection_date="1968" FT /db_xref="taxon:1170506" FT CDS 17..2905 FT /codon_start=1 FT /product="VP2" FT /note="outer capsid protein" FT /db_xref="GOA:H9ZXS3" FT /db_xref="InterPro:IPR001742" FT /db_xref="UniProtKB/TrEMBL:H9ZXS3" FT /protein_id="AFH41520.1" FT /translation="MNELGICVYRSGEQIPSNLITRYPVLIDLSNRIREVEGKHDVTQL FT AGKHNVDVQNVPARFIRTSTLGCDTCLVFPSLLETAIISYDMRKGGQRATREWLERNLR FT LQTDYQPIRADYRGESDKITYQMCNSRVSLISNYAETAAFDYRIVPVNQNCKHANADIL FT DELIFTDYYKVSQGESYMLKDTVKLVHSATTGTMNSSPLTRQQPMGERRRIAAHAAFST FT VNEFTDENAEQFDAFLKNQIQVVVRKREPNVVSPFLTRLERLVDGWLKAVDHKANVDVG FT AVCQIVSNVGRLIWNGEYEYDDRAVSNRFQENLNRMLDKDQSTETANILASGILQRPMH FT KFLALLAITATDTYGGRLWWDNPYPCFRGCIMITDLMFTDTYKVLRDIYSWSLRPNQAT FT QREIQKERNTYPFRKVNLFEDNGRRNNVRYSWEQEPLADELEVCLDGNYYVEDDDLDEQ FT CEINPVKYRELVQDVINNGWRPKNWTLSSILIERYNLFVLDFAKDAYIDSAGDLFLPHY FT LEKWIAFPLFNTKFRLTQTELISSKADDPWAKRVGADVRRNVIQTSLNAIGTKRDSRDC FT LMGSALSRGQKYSNHSEELLKIILKDTLFFETYDLHLSVDLQQCYSGIITRYELYLYFI FT MRLRMILNYFQYEGCEGTDDKMIRRFHYLFQAKNMIQFMDGTLRLIFEKDERLMTIDES FT AEIHHQIAHGSVEQRMIAMEKSFPNFHRAWKRMKLAETVGETLIANFFMIYLFECGDVR FT AADIKNNYPGLVYSRDKIKLVPMHPSFEYGHRGAGALWHLLRFFPCAHDQTRQLDEDEV FT EISRNVYDYLTNEQIIFIEDSSSQRRLRRQHYEIHQSSFCGGVSEALSFIIPTIHPERG FT FVVFVITDEKITAHVRMELAISRFRKVEKYVFGIVLVQLDNEGNVQIFTKGKVSGKILQ FT RTFLKYTHKVILCEMDQLVFGNDELITKLTGV" XX SQ Sequence 2941 BP; 910 A; 487 C; 705 G; 839 T; 0 other; gttaaaatct tctacgatga atgaactcgg catatgtgtg taccgatcag gagaacagat 60 tccgagtaat ctgataacga gatatccagt tttaattgat ctgagtaata ggattcgtga 120 agttgaggga aagcatgatg ttacgcagct ggcgggtaag cacaacgtcg atgtgcaaaa 180 tgtcccagct aggtttatcc gtacgtcaac attaggatgc gatacatgtc tggtttttcc 240 cagtttactt gagacggcca ttataagcta tgatatgcgg aaaggtggtc aacgagcgac 300 tcgagaatgg cttgagcgga acttgagact tcaaacggat tatcagccaa ttagagccga 360 ttatcgagga gagagcgata agattacata tcagatgtgt aatagcagag tgtcacttat 420 ctcaaactac gctgagaccg cagcgtttga ttaccgaata gttcctgtga atcagaattg 480 taaacatgca aacgcagata ttcttgatga attaattttc acagattatt ataaagtctc 540 acaaggcgaa agctacatgc taaaggatac agtcaaattg gttcatagtg caactacggg 600 tacaatgaat agttcaccgt taaccaggca acaacccatg ggtgaaagaa gacgaattgc 660 ggcacatgcg gcgttcagta ctgtaaatga gtttacggat gagaatgctg aacaatttga 720 tgcgtttctt aagaatcaaa tacaagtagt ggtacgaaag cgtgaaccaa atgtcgtgag 780 cccattttta acgcgattgg aaagattggt cgatgggtgg ctaaaagcgg tggaccataa 840 agcaaacgtt gatgttggcg cggtgtgtca aatagtttct aatgttggac ggcttatttg 900 gaatggagag tatgaatacg atgatcgcgc agtttcaaat cgatttcaag aaaatctcaa 960 tcgtatgtta gacaaagatc aaagtactga aacggcgaat atattggctt cgggtatttt 1020 gcaacgtcca atgcataaat ttcttgcgct cttggcaatt acggcgacgg atacctatgg 1080 cgggcgccta tggtgggaca atccctatcc atgttttagg gggtgcatca tgatcactga 1140 tctcatgttt acagatactt ataaagtttt acgcgacata tattcatgga gcttacgtcc 1200 aaatcaggcg acacagcgag agattcaaaa agaacggaac acgtacccat tcagaaaagt 1260 taacttattc gaggataatg ggcgcagaaa taatgtaagg tattcatggg agcaagagcc 1320 cttagccgat gagcttgagg tctgcttaga tgggaattat tatgtggaag atgatgatct 1380 ggacgaacag tgtgagatta acccggttaa atatagagag ttagtacaag acgtaatcaa 1440 taatgggtgg cgcccaaaga attggacgtt atcctcaatt ttaatcgaga gatataatct 1500 gtttgtttta gatttcgcta aagacgctta catcgattcg gctggcgact tatttttacc 1560 acattatcta gagaaatgga ttgccttccc actgtttaac acaaagtttc gacttactca 1620 aactgaatta attagttcga aagctgatga tccatgggca aagagagttg gtgcggatgt 1680 gcgacgtaat gttattcaga cttcattgaa tgcaattggg acaaagagag attcaagaga 1740 ttgtttaatg ggaagcgcgt tatcacgagg ccagaaatat tctaaccatt cagaggagct 1800 tttaaaaatc attctcaagg ataccctctt ttttgaaact tatgatttgc atttatcggt 1860 tgatctacaa cagtgttaca gtgggattat aacacgttat gaattgtatc tgtatttcat 1920 tatgaggttg cgaatgattc tcaattattt tcaatacgaa ggttgtgagg gtactgacga 1980 taagatgata cgtcgttttc attacttatt tcaagcaaaa aatatgattc agtttatgga 2040 tggaacgtta aggttgattt ttgaaaaaga tgagagacta atgactatag atgaatcagc 2100 agaaatacat catcaaattg cacatggtag cgtcgaacaa cgaatgatcg caatggagaa 2160 atcgtttccg aattttcacc gagcatggaa aaggatgaaa ctagcggaaa ctgttggcga 2220 aacgttaatt gctaatttct ttatgatcta tttatttgaa tgtggggatg tgcgcgcggc 2280 agatatcaaa aacaattatc cagggttggt gtactccagg gacaaaataa aattggtacc 2340 catgcatccg agctttgagt atggtcatcg gggagccggt gcgttatggc atttactacg 2400 tttcttcccc tgtgctcacg atcagacgag gcagttggac gaggatgaag ttgaaatcag 2460 tcgtaatgtt tatgactatt taacaaacga gcaaataatt tttattgaag attcatcatc 2520 acaaaggcgg ctgcgcaggc agcattatga gattcatcag tccagttttt gtggcggggt 2580 gagtgaggct ttgagcttta ttattccaac gatacatcct gagaggggct tcgttgtatt 2640 cgtgatcaca gacgagaaaa ttacggcgca tgtgaggatg gaattagcta tttctcggtt 2700 caggaaggtg gaaaagtatg tttttgggat agttctagtg cagttggaca atgaggggaa 2760 tgttcagatt tttacgaaag gaaaggtttc aggcaaaatt ttacagcgta cttttttaaa 2820 atatactcac aaagttattc tatgtgaaat ggatcaactc gtattcggaa atgatgaatt 2880 aatcacgaag ttgaccgggg tatagcccga tgacacgggc tacgtagtag attacactta 2940 c 2941 //