ID JQ070386; SV 1; linear; genomic RNA; STD; VRL; 3948 BP. XX AC JQ070386; XX DT 15-APR-2012 (Rel. 112, Created) DT 15-APR-2012 (Rel. 112, Last updated, Version 1) XX DE Pata virus isolate CAF1968/01 segment 1, complete sequence. XX KW . XX OS Pata virus OC Viruses; Riboviria; Reoviridae; Sedoreovirinae; Orbivirus. XX RN [1] RC Publication Status: Online-Only RP 1-3948 RX PUBMED; 22438872. RA Belaganahalli M.N., Maan S., Maan N.S., Nomikou K., Pritchard I., Lunt R., RA Kirkland P.D., Attoui H., Brownlie J., Mertens P.P.; RT "Full Genome Sequencing and Genetic Characterization of Eubenangee Viruses RT Identify Pata Virus as a Distinct Species within the Genus Orbivirus"; RL PLoS One 7(3):E31911-E31911(2012). XX RN [2] RP 1-3948 RA Belaganahalli M.N., Maan S., Maan N.S., Nomikou K., Mertens P.P.C.; RT ; RL Submitted (22-NOV-2011) to the INSDC. RL Vector-borne Viral Diseases Programme, Institute for Animal Health, RL Pirbright laboratory, Ash Road Pirbright, Woking, Surrey GU24 0NF, United RL Kingdom XX DR MD5; 90fc69e1074bec3fe5d3821b870a2f61. DR EuropePMC; PMC3305294; 22438872. DR EuropePMC; PMC3387800. DR EuropePMC; PMC5488374; 28595631. XX CC GenBank Accession Numbers JQ070386-JQ070395 represent the complete CC genome of Pata virus isolate CAF1968/01. XX FH Key Location/Qualifiers FH FT source 1..3948 FT /organism="Pata virus" FT /segment="1" FT /host="Aedes palpalis" FT /isolate="CAF1968/01" FT /mol_type="genomic RNA" FT /country="Central African Republic" FT /collected_by="J.P. Digoutte and F.X. Pajot" FT /collection_date="1968" FT /db_xref="taxon:1170506" FT CDS 12..3923 FT /codon_start=1 FT /product="VP1" FT /note="RNA-dependent RNA polymerase; Pol" FT /db_xref="GOA:H9ZXS2" FT /db_xref="InterPro:IPR007097" FT /db_xref="InterPro:IPR008723" FT /db_xref="UniProtKB/TrEMBL:H9ZXS2" FT /protein_id="AFH41519.1" FT /translation="MVAITVQGADLVKRIVERLYPFIEIDLTSGVFMFYKFSDNIRQIR FT SKHGVKYLRLAEEIERNIREGKEYLHGLRVLRENSWRELFGEKNQNTESYQVYKNSIIP FT LSQLEPEEEFLRNYQVDLNDISGVSTFVEMRAKNEMQIFGDLPIKVWALFIDELGKEMK FT MKPLGIDTVRDFVYMHGEPFHQGVRDLSRLEDFNTCYTTPLLLEMCCMESILEFNVVMR FT MREEGISALEFGTLQIDPLALLREFFIICLPHPKKINNILRSPYSWFVKMWGVAADNIT FT VLESDASDDRNAKDVYYTKFRTVSNSYTSIFKGKFYRDSLKMNQEKVQEAVKYSQELGL FT HQKELAIFSEMLKKVYTTPFYPFKPSNVILASFLLSIQTITGYGRAWVKNAGTDFEKQM FT KPAADNLISDVSDRTRENFIKAYKEAEEKREEIVKPEDLYTSMLRLARNTSSGFSTELL FT VQKRFGPKTGRREMVKITSRIKALVIFTKGHTVFTESELRKKYNTTELYQTKGSRDVPI FT KSTRTIYSINLSVLVPQLVVTLPLNEYFARVGGVTSPEYSRIGGKVIVGDLEATGSRVM FT DAADTFRNSGDETILTIAIDYSEYDTHLTYHNFRKGMLEGIRQYLTKYANLRYEGYSLN FT ELVEFGYGEGRVSKTLWNGKRRVFRASLSKYLALEEGERSMISFRPPFGVKPVSSLAVA FT EKIADEKGEVLVSPTDGSDLALIDTHLSGENSTLIANSMHNMAIGGLIQEKVLALNRHD FT IVFLSEQYVGDDTLLYCKLNTRDSETVNRIIDCIFDTVRKCGHEASPSKTVIAPFTVEK FT TQTHAKQGIYIPQDRMMIISSERRKDIEDVQGYVRSQVQTMITKVSRGFCHDLAILILM FT LKATFIGAWKLKRTVKDQQGYRDRKFDSDEEDGFTLVVLRNPLSLFVPLAWNGYGAHPA FT ALNIVMTEEIFIDSLQMRKLDLIMEPIKKIVSKCLPPWNETTADKRNIYSETKMSFFSR FT MARPAVQVALASPEIMDAVDALPLGDFSPGRLSKTMMHSALLKESTARGLLAAGYEAEY FT QKALNRWSENAVCLQVFEEAGVISTTYAKLFDLLFEEEEQKREFIFPDQNLSPQFYIQK FT MKIGPRQSTRMRISYVDRIDVILRKDVVMRGFITANTILNVLEQLGTNHTASDLTTIFT FT LMNIEHRVAEELSEYLTSERIRFDALKLLKKGIAGDEFTMSLDVATQKFVDRFIVYPYQ FT LTKTELDAVMLYCSQIVMLRAATGEVMKKMRISVPDEEKRRFKIRAQRFRTHIPKIKVV FT KKLLDLNRMSVRNLENQFV" XX SQ Sequence 3948 BP; 1265 A; 654 C; 936 G; 1093 T; 0 other; gtaaaatcac aatggtcgca attaccgtgc aaggtgcgga cttagttaaa cgcatagtag 60 aacggctgta tccatttatc gagatcgacc tgacgagtgg tgtttttatg ttttataagt 120 tttcagacaa tattcgacaa atacgaagta agcatggggt gaaatatcta aggttagctg 180 aagaaatcga acgaaatata agagaaggta aagaatactt acatggctta agggtattac 240 gcgaaaacag ctggcgtgag ctatttggag aaaagaatca aaataccgaa tcgtatcaag 300 tgtataaaaa ttcgattatc cctttaagtc agttagagcc tgaggaggaa tttttaagaa 360 attatcaagt tgacttgaat gatattagtg gggtttctac atttgtggag atgcgtgcga 420 aaaatgagat gcagattttt ggagacttgc caattaaagt gtgggcatta ttcattgacg 480 aattaggaaa ggagatgaaa atgaagccat taggaatcga taccgtacgg gactttgttt 540 atatgcatgg agagcctttt catcagggcg tacgtgactt atctagactt gaagatttca 600 acacttgtta cactacccca ttattactag aaatgtgttg catggagtcg attctagagt 660 tcaacgtcgt aatgcgaatg agagaagaag gaataagtgc actggaattc ggcactcttc 720 agattgatcc gcttgccttg ttacgtgaat tctttattat atgtttaccg catccgaaaa 780 agataaacaa tatactacga tctccatatt cgtggtttgt taagatgtgg ggcgtagcag 840 cagataatat tacagtactt gaatcagacg cgagtgatga tcgcaatgcg aaggatgtct 900 attatacgaa atttcgaaca gtttcgaact catataccag catttttaaa ggtaaatttt 960 atcgcgatag cctgaaaatg aatcaagaga aggttcaaga agcagttaag tactctcagg 1020 agctagggtt gcatcagaag gagttagcta tcttctcaga aatgctgaaa aaagtttata 1080 cgacaccatt ttatccattc aaaccttcaa acgtaatcct tgcatcgttt ctgttaagca 1140 tacaaacaat cactgggtat ggaagagcgt gggttaaaaa tgcaggaacg gattttgaaa 1200 aacagatgaa gcccgcggcg gataacttaa taagtgatgt ttcagatcgt acacgcgaga 1260 actttattaa ggcatataaa gaagcagaag aaaaaagaga agagattgtt aagccagagg 1320 atctctatac atcaatgctg cgattagcac gaaatacgag ttcgggattt tcaacggagt 1380 tgttagtcca gaaaaggttt ggcccaaaga cggggaggag agaaatggtg aaaatcactt 1440 cgcgaataaa ggcattagtt atatttacca aaggtcatac cgtttttact gaatctgaac 1500 tgcggaagaa atataataca acagagctat accagacaaa aggatctaga gatgttccga 1560 taaaatcgac acgtacgatc tattcgatta acctttcagt tctagtaccg cagctagttg 1620 tgacgctccc tttaaatgaa tacttcgcta gagtaggagg agttacgtca ccagagtata 1680 gtaggatcgg aggaaaagtg atagtcggag atctggaagc gacggggtca cgagtcatgg 1740 acgcagcaga tacatttcga aactcaggcg atgagacgat tttaacgatc gcgatcgatt 1800 atagtgaata cgatacacat ctaacttatc ataattttag gaaagggatg ctggaaggta 1860 tacgtcaata tctgaccaag tatgctaacc tgagatacga aggatattct ttgaatgaat 1920 tggttgaatt cggttatggt gaaggacgag tttcaaagac tttatggaac gggaagcgtc 1980 gcgtctttcg cgcttcgctt tctaagtacc ttgctttaga agagggtgaa agaagtatga 2040 tttccttccg cccgcctttt ggcgttaagc cggtatcaag tttagcggta gctgagaaaa 2100 tcgcagatga gaaaggtgag gtattagtgt ctccgacgga tggtagtgat ctggccttga 2160 ttgatacgca tctgtcaggt gaaaattcaa cgttgatcgc aaattcgatg cataatatgg 2220 ccattggcgg tctgatacaa gagaaggtgt tagcgttaaa cagacacgat atcgtatttc 2280 tgtctgagca atacgttgga gatgatacgt tgttgtattg taagttaaat acacgtgatt 2340 ctgagacggt gaataggatc atcgattgta tttttgatac tgtacggaaa tgtgggcacg 2400 aggcatcacc atcaaaaaca gtaattgctc cttttacggt tgaaaaaact caaacgcatg 2460 ctaaacaggg catatatatt ccacaggatc ggatgatgat tatatcctcg gagcgtcgaa 2520 aagatattga agacgtacaa ggttatgttc gatcgcaggt acaaactatg atcacaaagg 2580 tcagcagagg tttttgtcat gacttagcta tattaatctt gatgttaaaa gcaactttta 2640 ttggagcatg gaagcttaaa cggacggtaa aagaccaaca aggatatcgc gatcgtaagt 2700 ttgatagtga cgaggaggat ggttttactt tagtagtatt gaggaatccg ctgagtcttt 2760 ttgtaccact cgcttggaat ggttatggag cacatcctgc ggctttaaac attgtgatga 2820 cagaggaaat ttttatcgac tcattacaaa tgcgtaaact tgatttaata atggaaccga 2880 ttaaaaagat tgttagtaaa tgtttaccgc catggaacga gacaactgca gataaaagaa 2940 acatatattc agaaacaaag atgagttttt tcagcagaat ggcgcggccg gctgttcaag 3000 tcgctttagc ttcgcctgag attatggatg ccgtagatgc cttaccctta ggagatttct 3060 ctcctggccg tctatctaaa acaatgatgc atagtgccct cttgaaggaa tcgaccgcta 3120 gaggcttatt ggcggctggg tatgaggcgg aatatcaaaa agctttgaat cgttggagtg 3180 aaaatgcagt ttgtcttcaa gtgtttgagg aggcaggagt gattagtacg acgtatgcga 3240 agctgttcga tttgctattc gaggaggagg aacaaaaacg agagttcatc ttcccagatc 3300 aaaatctctc tccgcaattt tatattcaga aaatgaaaat agggcctcgt caatcaacga 3360 ggatgcggat ctcctacgtt gatcgaattg atgtaattct aaggaaagat gtagttatga 3420 gaggttttat tacagcgaat acaatattaa acgtactgga gcaacttggg acgaatcata 3480 ccgcttcgga cttgacgact atattcacac ttatgaacat agaacatcgg gtagcggagg 3540 aattgtcaga gtacctgact tctgaaagaa ttaggtttga tgcgttaaag ctactaaaaa 3600 agggaatagc aggtgatgaa tttactatgt ctctggatgt tgctactcag aaatttgttg 3660 atcgttttat agtgtatcct tatcagctga cgaaaacaga actggacgct gtgatgctct 3720 actgttcgca gattgtaatg ctacgcgcgg cgacgggtga agtcatgaaa aagatgagaa 3780 ttagtgtgcc tgatgaagaa aaaagaagat tcaaaattcg tgcgcaacgc tttagaactc 3840 acataccgaa aatcaaagtg gtcaaaaaac tattggatct aaaccgtatg tctgttagga 3900 atctagaaaa tcaattcgtt taacaagtcg cgcccgtgat acacttac 3948 //