ID   JQ045705; SV 1; circular; genomic DNA; STD; VRL; 2596 BP.
XX
AC   JQ045705;
XX
DT   23-DEC-2012 (Rel. 115, Created)
DT   23-DEC-2012 (Rel. 115, Last updated, Version 1)
XX
DE   Potato yellow mosaic virus isolate Tulua/Valle del Cauca/2008 segment A,
DE   complete sequence.
XX
KW   .
XX
OS   Potato yellow mosaic virus
OC   Viruses; Geminiviridae; Begomovirus.
XX
RN   [1]
RP   1-2596
RA   Lopez-Lopez K., Betancurt-Perez J.F., Vaca-Vaca J.C.;
RT   "Distribution and genetic diversity of tomato-infecting begomovirus in
RT   Colombia";
RL   Unpublished.
XX
RN   [2]
RP   1-2596
RA   Lopez-Lopez K., Betancurt-Perez J.F., Vaca-Vaca J.C.;
RT   ;
RL   Submitted (21-NOV-2011) to the INSDC.
RL   Facultad de Ciencias Agropecuarias, Universidad Nacional de Colombia,
RL   Carrera 32 via Candelaria, Palmira, Valle 000, Colombia
XX
DR   MD5; a8d5a91af5c89d3164e034b10e10fe12.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2596
FT                   /organism="Potato yellow mosaic virus"
FT                   /segment="A"
FT                   /host="Solanum lycopersicum"
FT                   /isolate="Tulua/Valle del Cauca/2008"
FT                   /mol_type="genomic DNA"
FT                   /country="Colombia"
FT                   /collected_by="K Lopez-Lopez & JC Vaca-Vaca"
FT                   /collection_date="10-Dec-2008"
FT                   /db_xref="taxon:10827"
FT   gene            167..922
FT                   /gene="AV1"
FT   CDS             167..922
FT                   /codon_start=1
FT                   /gene="AV1"
FT                   /product="coat protein"
FT                   /note="CP"
FT                   /db_xref="GOA:K9M8Q4"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="InterPro:IPR000650"
FT                   /db_xref="InterPro:IPR029053"
FT                   /db_xref="UniProtKB/TrEMBL:K9M8Q4"
FT                   /protein_id="AFS42025.1"
FT                   /translation="MPKRDAPWRSMAGTSKVSRNANYSPRSGFGPRINKAAEWVNRPMY
FT                   RKPRIYRTLRTPDVPRGCEGPCKVQSFEQRHDILHTGKVMCISDVTRGNGITHRVGKRF
FT                   CVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATV
FT                   KNDLRDRYQVMHRFYGKVTGGQYASNEQAIVRRFWKVNNHVVYNHQEAAKYENHTENAL
FT                   LLYMACTHASNPVYATLKIRIYFYDSIIN"
FT   gene            complement(919..1317)
FT                   /gene="AC3"
FT   CDS             complement(919..1317)
FT                   /codon_start=1
FT                   /gene="AC3"
FT                   /product="replication enhancer protein"
FT                   /note="REn"
FT                   /db_xref="GOA:B1Q043"
FT                   /db_xref="InterPro:IPR000657"
FT                   /db_xref="UniProtKB/TrEMBL:B1Q043"
FT                   /protein_id="AFS42028.1"
FT                   /translation="MDSRTGELITARQAENGVFIWEIENPLYFKINRVEDISYTRTRVY
FT                   HLQIRFNHNLRRALDLHKAYLNFQVWTTSMTASGSTYLARFRQLVLMYLDQLGVISINN
FT                   VIRAVRFATDRSYVNDVLENHSIKYKFY"
FT   gene            complement(1064..1453)
FT                   /gene="AC2"
FT   CDS             complement(1064..1453)
FT                   /codon_start=1
FT                   /gene="AC2"
FT                   /product="transcriptional activator protein"
FT                   /note="TrAP"
FT                   /db_xref="GOA:K9M8M8"
FT                   /db_xref="InterPro:IPR000942"
FT                   /db_xref="UniProtKB/TrEMBL:K9M8M8"
FT                   /protein_id="AFS42027.1"
FT                   /translation="MQSSSPSQPPSIKKAHRQAKRRAIRRRRIDLNCGCSIYFHIDCAG
FT                   HGFTHRGAHHCTSGREWRVYLGDRKSPVFQDKPSRGHIIHQNQGVPPPNQVQPQPQESV
FT                   GSPQSLPELPSLDDVDDSFWVDLFS"
FT   gene            complement(1395..2450)
FT                   /gene="AC1"
FT   CDS             complement(1395..2450)
FT                   /codon_start=1
FT                   /gene="AC1"
FT                   /product="replication-associated protein"
FT                   /note="Rep"
FT                   /db_xref="GOA:K9M8L8"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR001301"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="UniProtKB/TrEMBL:K9M8L8"
FT                   /protein_id="AFS42026.1"
FT                   /translation="MPRKGSFSIKAKNYFLTYPQCSLSKEETLSQLQNLTIPVNKKFIK
FT                   ICRELHENGEPHLHVLIQFEGKFNCTNNRLFDLVSPTRSTHFHPNIQGAKSSSDVKSYV
FT                   EKDGDTIEWGMFQIDGRSARGGQQTANDAAAEALNSGTKEEAMKIIKEKLPEKFLFQYH
FT                   NLSSNLDRIFMVTPAPWAPPFPLSSFTNVPDVMQEWADDYFGRGAAARPERPISIIIEG
FT                   DSRTGKTMWARVLGPHNYLSGHLDFNCRVFSNNVEYNVIDDIAPHYLKLKHWKELLGAQ
FT                   RDWQSNCKYGKPVQIKGGIPSIVLCNPGEGSSYKAFLEKEDNASLKNWTLKNAVFVTLT
FT                   ATLYQESTQAS"
XX
SQ   Sequence 2596 BP; 658 A; 568 C; 607 G; 763 T; 0 other;
     accggatggc cgcgcttttt tcctcttatg ggcctttctt gtagtgggct ttaatttggc        60
     ccaatcatag tttgtctgac aatcctagat aagtggaaat acttgggcgt taaggtgctc       120
     atgatctata aattaaagcc ttttggccca ctatctttaa ctcaaaatgc ctaagcgcga       180
     cgctccatgg cgttcaatgg cgggaacctc aaaggttagc cgcaacgcta attattctcc       240
     ccgttcagga tttgggccaa gaataaacaa ggccgctgaa tgggttaaca ggcccatgta       300
     ccggaagccc aggatttatc ggacgctgag gacgcctgac gttccaagag gctgtgaagg       360
     gccttgtaag gtccagtcat tcgagcagcg acatgacatc ttacacactg gtaaggtaat       420
     gtgtatatct gacgttaccc gcggtaacgg tattacccac cgtgtcggta agcggttttg       480
     tgtcaagtcc gtttacatat tagggaagat atggatggac gagaacatca agctgaagaa       540
     ccacaccaat agcgtcatgt tctggctggt tagagatcga agaccgtatg gtacgcctat       600
     ggattttgga caagtgttca acatgttcga caacgagcct agcaccgcca ccgttaagaa       660
     cgatcttcgt gatcgttacc aggtcatgca taggttctat ggcaaggtca caggtggtca       720
     atatgcaagc aacgagcagg cgattgtgag gcggttttgg aaggtcaaca atcacgttgt       780
     ctacaaccac caagaagctg ccaagtacga gaaccatacg gagaacgccc tattattgta       840
     tatggcatgc actcatgcct caaaccctgt atatgcaacg cttaagattc ggatctattt       900
     ttatgattcg atcataaatt aataaaattt gtattttatt gaatggttct ctagtacatc       960
     atttacatat gatcgatctg ttgcaaaacg aacagctcta attacattgt taattgaaat      1020
     aacacctaac tgatctaagt acataaggac taactgtcta aatctagcta aataagtcga      1080
     cccagaagct gtcatcgacg tcgtccagac ttggaagttc aggtaggctt tgtggagatc      1140
     caacgctctc ctgaggttgt ggttgaacct gatttggagg tggtacaccc tggttctggt      1200
     gtatgatatg tcctctactc ggtttatctt gaaatacagg ggattttcta tctcccagat      1260
     aaacacgcca ttctctgcct gacgtgcagt gatgagctcc cctgtgcgtg aatccatgtc      1320
     cggcgcagtc aatgtggaag tatatggagc acccgcagtt taaatcaatg cgtctccttc      1380
     taatggccct cctcttagct tgcctgtgtg ctttcttgat agagggtggc tgtgagggtg      1440
     acgaagactg cattctttag agtccagttt ttgagagacg cattatcttc tttctcgagg      1500
     aaagctttat agctggaacc ctcgccagga ttgcaaagca cgattgatgg gatccctcct      1560
     ttaatttgaa caggctttcc gtacttgcaa tttgattgcc agtccctttg ggccccaagt      1620
     agttctttcc agtgctttag ctttagataa tgcggtgcga tgtcatcaat gacgttatat      1680
     tcaacgttat tcgaaaagac cctacaattg aaatcaagat gaccactcaa gtaattatgt      1740
     gggcctaaga cccgtgccca catcgtcttg cccgttctag agtcaccttc aatgataata      1800
     ctaataggtc tttctggccg cgcagcggca ccccttccaa aataatcatc tgcccactct      1860
     tgcatcacgt cgggaacgtt cgtgaaagag gagagtggaa acggaggggc ccatggtgcc      1920
     ggagtcacca tgaaaatcct atcgaggtta ctggataggt tatgatactg aaaaagaaac      1980
     ttttccggca acttttcttt gatgattttc atggcttctt ccttcgttcc agagtttaat      2040
     gcttcggcag ctgcgtcgtt agctgtttgt tgaccgcctc tagcacttct tccatcaatc      2100
     tggaacattc cccattcaat ggtgtctccg tctttctcga cgtatgactt gacatcggag      2160
     ctcgatttag ctccctgaat gttcggatgg aaatgtgttg acctggttgg ggataccaga      2220
     tcgaacaatc tgttgtttgt gcagttgaat ttcccttcga actggataag aacgtggaga      2280
     tgaggttccc cattctcgtg aagttctctg cagatcttga tgaatttctt gttcactggg      2340
     atagttaggt tttgaagttg ggaaagtgtc tcctctttgc taagagagca ttggggatat      2400
     gtaaggaaat aatttttggc tttaatagag aacgagcctt tgcgtggcat ttttgtaaat      2460
     aagaatgttc ccccgatatg ttccccctat tgctctggct ctcaaaactc ttatgaattg      2520
     ggggaactgg gggaacatat atagtagaaa ttcctatggt tagattcgcc acgtggcggt      2580
     catccgttat aatatt                                                      2596
//