ID JQ045337; SV 1; linear; genomic RNA; STD; VRL; 3299 BP. XX AC JQ045337; XX DT 26-MAR-2012 (Rel. 112, Created) DT 23-AUG-2013 (Rel. 117, Last updated, Version 2) XX DE Raphanus sativas chrysovirus 1 segment RNA3 putative protease gene, DE complete cds. XX KW . XX OS Raphanus sativas chrysovirus 1 OC Viruses; Riboviria; Chrysoviridae; Alphachrysovirus; OC Raphanus sativus chrysovirus. XX RN [1] RP 1-3299 RX DOI; 10.1016/j.virusres.2013.06.004. RX PUBMED; 23850842. RA Li L., Liu J., Xu A., Wang T., Chen J., Zhu X.; RT "Molecular characterization of a trisegmented chrysovirus isolated from the RT radish Raphanus sativus"; RL Virus Res. 176(1-2):169-178(2013). XX RN [2] RP 1-3299 RA Liu J., Li L., Xu A., Wang T., Chen J., Zhu X.; RT "A tripartite radish virus representing a new taxon of Chrysoviridae"; RL Unpublished. XX RN [3] RP 1-3299 RA Liu J., Li L., Xu A., Wang T., Chen J., Zhu X.; RT ; RL Submitted (20-NOV-2011) to the INSDC. RL College of Life Science, Institute of Bioengineering, No. 2 Road, Xiasha, RL Institute of Bioengineering, Zhejiang Sci-Tech University, Hangzhou, RL Zhejiang 310018, P. R. China XX DR MD5; 71c622795b91919bb75c616c6c20c9f4. XX CC ##Assembly-Data-START## CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..3299 FT /organism="Raphanus sativas chrysovirus 1" FT /segment="RNA3" FT /host="Raphanus sativus cv. Duan-ye 13" FT /mol_type="genomic RNA" FT /country="China" FT /collection_date="01-Oct-2009" FT /db_xref="taxon:1162393" FT CDS 135..3122 FT /codon_start=1 FT /product="putative protease" FT /note="viral protease" FT /db_xref="GOA:H9BPR3" FT /db_xref="UniProtKB/TrEMBL:H9BPR3" FT /protein_id="AFE83592.1" FT /translation="MDMGMSALKFINELPMNLKHQEGYRRVIEASRAGQNPVLDLAAWE FT KACVGIGEGNLLRDLAMPEKFTLKGMDVSLPIRSQSLAKQKDKVVGKGTLTGERVYNET FT FSAKENILLIPHGEFVDNCSRPGVQLPNNHPMYKSVLSSLTGIANHYLTSTSISFLGEK FT LTVRQDLRHLFLKGYLMVMSYNLATVSDVKKLKFNNLNAKVCYNVTPKDKMHLLVSKKI FT VVDASMFSPTELWILAEMGGKYPNRRYGDRNIYNSIFMEADDLVFFTTKGEDSLICNAS FT MGSPERMWCSLLNIAIKMDALDDLKMVISEFRGLPGILSRVRDWTDKYDFRLEYPLSYS FT VLLALDGAVEKKPTIQKHSNYFSTSKCLVADLLLSRMMEMSLFNVIEESGALGSIGCPT FT GAPSADPFLDGTFRQLGLRLDAEGDNIVLDEWKGITSADTPVMFAGKLRHMGLMMASAI FT KRGESDFLRPQLLHALPYSRCKNTTWACVRGWRFQSFNFEDDRDKRLRDNLLTRGYTWV FT MGVSDQVPRVGLNAAGDKLMDNLSLEEMKFLSCASGEYSIGLVRHILDVEVQPRTDEME FT LDSDCFYMSNYPGSRCTIAYDSSGLPKNVIDSRSSVNDVRDTLGVSRRGVPNRGAPPNL FT RLASFGGGNVNLRLEPSGAQDPALLLGPSDGGDTDGVPSAGANRRGDQRYHGRPNGRGR FT TSGHSGRGAGSGGRDGGRGRAQDYRAPNRGDTLPGRVAGTVTDGARRHGTGESLPAVLD FT SNPELEGQTAGTNDESGVLDEALLISPGALKLVMNPPRVVVDGVPRGVTARTVRGEEVE FT IVAGLQKDLVNENALRGYLLETVGDGRCGVHAILQDLRVRRMIDAEDVNAALTDILSKL FT VSTRDHNYQELAAVCNNLNMGLVVIGEESKRLLNYGDVGAHHIMYIKHSDARSHYETFI FT PDTDGDEVFDGYTYFEEHVTPGELAVAWRTIFPILRSEEIEAERARQVSLNANGSRNRW FT RSDGAV" XX SQ Sequence 3299 BP; 913 A; 621 C; 953 G; 812 T; 0 other; tgataaaata tataataatt tggaccctga ggaagggaaa cagtcaaaga ctgtcggtcc 60 aagaagatcg ctgcaatcaa gcttttggca atttagcaat cataagcttt agcaacgaaa 120 caaaattaat agccatggat atgggtatga gtgctttgaa gttcataaat gaacttccga 180 tgaatttgaa acaccaagaa ggttaccgac gagtaatcga agcttcccga gcaggccaga 240 atccagttct ggacctagca gcatgggaga aggcatgtgt cggcataggt gagggcaatt 300 tgctaaggga cctagcaatg cccgagaaat ttactttgaa ggggatggat gtgtcactcc 360 caatacgatc acagtcctta gctaagcaga aggacaaggt ggttgggaaa gggaccctga 420 caggggagag ggtctacaat gagaccttct cggccaagga gaatatactg ctaatcccac 480 acggtgagtt tgttgataac tgctcacgac ctggggtgca attgccaaac aaccacccca 540 tgtacaagtc ggtgctctct agtctgactg gtatagccaa tcattacttg actagcacgt 600 caataagttt tttgggggag aagttgactg taaggcagga cctaaggcat ctatttttga 660 aaggatacct gatggtcatg tcgtacaacc tagcaaccgt atccgatgtg aagaagctca 720 agttcaataa cttgaatgct aaggtgtgtt acaatgtgac gccgaaagac aagatgcact 780 tgctagtttc taagaagata gtagtggatg ccagtatgtt ctcaccgact gaactatgga 840 tactggcaga gatgggggga aaatacccaa atagaaggta cggtgataga aacatataca 900 acagcatttt tatggaggct gatgatctgg tctttttcac caccaagggc gaggacagtc 960 tgatttgcaa tgccagcatg ggcagtccag agagaatgtg gtgctcgttg ttgaacatcg 1020 ctataaagat ggacgctctt gatgacttga aaatggttat cagtgagttc agaggattgc 1080 caggtatact tagcagagta cgagattgga cggacaaata tgacttccgt ctggagtacc 1140 ctctaagtta ttcagtcctg ttggctctgg acggtgccgt tgaaaagaag ccaactatac 1200 agaagcacag caactacttc tctactagca agtgcctggt ggctgacttg ctactgagta 1260 ggatgatgga gatgagccta ttcaatgtaa tagaggagtc cggcgcgcta ggtagcattg 1320 gttgtcctac aggggctcca agtgcagacc cattcctaga cggtactttc agacaactgg 1380 gactgaggct ggatgccgaa ggtgacaaca tcgtgctgga tgagtggaag gggataacct 1440 ctgcagacac tccagtaatg tttgctggta agttgaggca tatggggttg atgatggcat 1500 ctgctatcaa gcgcggggag tcagatttcc tgcgacctca gctattacat gctttgccat 1560 attccaggtg taaaaacacg acctgggcat gtgttagagg gtggaggttt cagtccttca 1620 actttgagga cgatagggat aagagattga gggataacct actaactcgt ggctacacat 1680 gggtcatggg agtgagcgat caagtaccta gagttggcct caatgctgct ggagacaagc 1740 tgatggacaa tttatcactt gaggagatga agttcctatc ttgtgctagc ggtgagtaca 1800 gtataggatt ggttagacat attttggatg tcgaagtgca gcccaggaca gatgagatgg 1860 agctggactc tgactgcttc tatatgtcga attatcctgg tagcaggtgt acaatcgctt 1920 acgatagttc tgggttaccc aagaatgtaa ttgatagtag atcgagtgtg aatgatgtta 1980 gggacacact tggtgtgagt aggaggggag ttccaaatag aggagccccc cctaatttga 2040 gattggcctc ctttggtggg ggtaatgtta atctgaggtt agagccaagc ggtgctcagg 2100 acccagcctt gctattaggg cccagtgatg gaggggacac ggatggtgtg ccaagtgctg 2160 gtgccaatag aagaggtgat cagaggtatc atggtaggcc caacgggaga ggacgaactt 2220 cgggccatag tggtagaggt gccggttctg gtggtcgaga tggcggaaga gggcgagcac 2280 aagactacag ggctcctaac aggggggaca cactacctgg cagggtggct ggtactgtta 2340 cagatggggc gagacgccat ggcactgggg agtcattgcc tgctgtgctg gattcaaacc 2400 ctgaattgga gggacagacc gctggtacta acgatgaatc gggggtttta gatgaagctc 2460 tcctaataag tcctggagct ttgaagttgg tcatgaaccc tcctagggtg gtggtagatg 2520 gtgtgccacg aggtgtgacc gctaggacgg ttaggggcga ggaagttgag atagtggctg 2580 gcctccagaa ggacctggtg aatgagaatg ctctgagggg ctatttgcta gagacggtag 2640 gtgatggcag atgtggtgtg catgctatat tgcaggacct cagggtgagg cggatgatag 2700 atgcggagga tgtaaatgca gcattaaccg acatattatc aaagttggtt agtacaaggg 2760 accacaatta ccaagagtta gctgcagtat gtaataacct aaacatgggt ttagtggtga 2820 ttggagagga atctaagagg ctgctgaact atggggatgt gggtgctcac cacattatgt 2880 acatcaagca ttctgatgcc cgaagccatt atgagacttt catccccgat acagatggag 2940 atgaagtgtt tgacgggtac acctattttg aagaacacgt gaccccaggt gaacttgccg 3000 ttgcctggag aactatattt cccatcctac ggagtgagga aatagaggct gaacgagcca 3060 ggcaagtcag tttgaatgcc aacggaagta ggaatcgttg gagatcagac ggagctgtat 3120 agttagatat aggttagttg taaatacttt acatatacta tgtgtgcaga cctgaggaag 3180 agaaaccttg cttcggcaag gtcgtccgcg aacacgccat aataggtcaa ttatggagtc 3240 tttcgtgacc gccccgtaat gcgttaactt acggaaacta agtttatata tatttgtca 3299 //