ID JQ045335; SV 1; linear; genomic RNA; STD; VRL; 3638 BP. XX AC JQ045335; XX DT 26-MAR-2012 (Rel. 112, Created) DT 23-AUG-2013 (Rel. 117, Last updated, Version 2) XX DE Raphanus sativas chrysovirus 1 segment RNA1 putative RNA-dependent RNA DE polymerase gene, complete cds. XX KW . XX OS Raphanus sativas chrysovirus 1 OC Viruses; Riboviria; Chrysoviridae; Alphachrysovirus; OC Raphanus sativus chrysovirus. XX RN [1] RP 1-3638 RX DOI; 10.1016/j.virusres.2013.06.004. RX PUBMED; 23850842. RA Li L., Liu J., Xu A., Wang T., Chen J., Zhu X.; RT "Molecular characterization of a trisegmented chrysovirus isolated from the RT radish Raphanus sativus"; RL Virus Res. 176(1-2):169-178(2013). XX RN [2] RP 1-3638 RA Liu J., Li L., Xu A., Wang T., Chen J., Zhu X.; RT "A tripartite radish virus representing a new taxon of Chrysoviridae"; RL Unpublished. XX RN [3] RP 1-3638 RA Liu J., Li L., Xu A., Wang T., Chen J., Zhu X.; RT ; RL Submitted (20-NOV-2011) to the INSDC. RL College of Life Science, Institute of Bioengineering, No. 2 Road, Xiasha, RL Institute of Bioengineering, Zhejiang Sci-Tech University, Hangzhou, RL Zhejiang 310018, P. R. China XX DR MD5; f5dc6249df160c94d08ff000069230fe. XX CC ##Assembly-Data-START## CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..3638 FT /organism="Raphanus sativas chrysovirus 1" FT /segment="RNA1" FT /host="Raphanus sativus cv. Duan-ye 13" FT /mol_type="genomic RNA" FT /country="China" FT /collection_date="01-Oct-2009" FT /db_xref="taxon:1162393" FT CDS 107..3523 FT /codon_start=1 FT /product="putative RNA-dependent RNA polymerase" FT /note="viral replicase" FT /db_xref="GOA:H9BPR1" FT /db_xref="InterPro:IPR001795" FT /db_xref="UniProtKB/TrEMBL:H9BPR1" FT /protein_id="AFE83590.1" FT /translation="MTGRKMNVINRGSSCSQYGGGEVISATSRVSRQGGKKKQKVGGLA FT QLEAKRGYVGMPDVRLDIGEEVRKVMDSYEIQMKYYLAHSSSIGSYKAKMNQLVNKVGR FT FEVPNLWALVMPGGHGKSWLSREYGFMDVDDLVDGNEFYELCQMRYELIERGDLEWTVH FT NERWYSSLRATLEAMTFERPTVVLVHSEECALEMGAKIMGVIVLEEPQFEVNIMGRDSL FT GKSFSRISRAFVMHRSMNEINVYRSNDEVEGAVLALCNILNIPVACPYKYSYQYENSWY FT GRSTPRWLLEGSVVGRENETDHVLKLALQGEIPKECVDHFVQNASPNKTSHGYGITMAQ FT WGYMMGRIVGSVRRPQKFDLTGDMFEIFPPDSMAERHRVNVTLRRLITECDILNDADVL FT DIMEHHVGEKHVFVSGLVCHWLGLGVETSVADKIYVLYLVPQEQWSQLLSDFHSMIRLS FT GWFCTTKISEEEKQSLMYMNMYTGREMYEPDWEKVVNERKVVEGSEFVSFDPRLKRWTR FT AQYLDDFDFCLQHAYSPMISNPRPVNVKNFLEFWKARRTWVAKGSTVMNHLPKEMLSYV FT IRFGDRMADVIRMRHNKKSLFENHEILDLIRETADTWNCSKVVAKLNETGKRRELLPGT FT LMHYIVFSYVLYVAEAQEPVGSTRLNVNDDDNLAYYDRKMGNGLHHMLYDWSNFNAQHS FT TDDMAKVIQYLARIPGCPEDYSTFCCAIADSFYHMWVIDPDGDKHEIKKGLFSGWRGTT FT WINTVLNHVYVAIGVMCCERIYRDFKPAYFDHGGDDLDVGFMAPQDCYKMMVVMDLIGY FT EATKIKQMIGYDAEFYRNTITARGVFASPSRGLANFVSGNWESGGAKTLREKASSILDQ FT VWKLQRRGVEPWFCNKLTSMALGHWLKIKIEDEWFTLNEEIIHGDPAQGGLGIPDERGE FT IWILDKTVIVAKDKDLSAFLPGAYCSSDYVEVVDSELKGSFLHLRGKEGLINKLAQQSY FT DLEQFEERDLFREMNRQSVKKVGSIMVLTPRWNEVIFSEFQHWCAEGGRALRLEKIETL FT KEFVGHIFHNERRLTLKDLMTVFMNEEVTENAINFKANPYYRRLLPDFLASLVDKFTRW FT YGNRLDLTLDEMEKVYTTVAYMISVIYEHHA" XX SQ Sequence 3638 BP; 1064 A; 589 C; 1044 G; 941 T; 0 other; tgataaaata tataataatt ggaccctgag gaagggaaac agtttcaggc tgtcggtcca 60 agaagatcac cgcaaacata gtcttaagct tttttttatt atagcaatga cagggcgaaa 120 gatgaatgtt ataaatcgtg gaagcagctg ctcccaatac gggggcggtg aagttatctc 180 tgctacaagc agagttagcc gacagggagg aaagaagaag caaaaagtgg gtggcctcgc 240 ccaattggaa gcaaaaaggg ggtacgttgg gatgcctgac gttaggctgg acataggaga 300 agaagtccgg aaggtgatgg actcctatga aatccaaatg aagtactacc tggcacacag 360 tagttcgatt ggctcgtata aggccaagat gaaccaactt gtcaataagg ttggacgctt 420 tgaagtaccc aacttgtggg ctttggttat gccaggcggg catggaaaga gctggctcag 480 tagggagtat ggtttcatgg acgtggacga ccttgtagac gggaatgagt tctacgagct 540 atgccagatg aggtatgaac taattgagcg tggtgacctt gagtggactg tacacaacga 600 aaggtggtac agtagtttga gggcaacgtt ggaagcaatg acgtttgaga ggccaaccgt 660 ggtactggtt cacagcgagg aatgtgccct agagatgggg gccaagataa tgggggttat 720 agttctagaa gaaccccagt ttgaggtgaa cattatgggc agagacagct tggggaaatc 780 gttctctagg ataagccgag cctttgtcat gcacaggagt atgaacgaga taaatgttta 840 ccggtcaaat gatgaagttg agggggcagt tttagcgctc tgcaatattc tgaacatacc 900 ggtggcatgt ccatacaagt actcgtatca gtatgagaat agttggtatg ggaggagcac 960 accaagatgg ttgttggaag ggagtgttgt ggggcgtgag aatgagacag accacgtgtt 1020 gaaacttgct ctacagggtg agattccaaa agagtgcgtt gatcattttg ttcaaaacgc 1080 ttctcctaac aagacgtctc atggctatgg cataacgatg gcacaatggg ggtacatgat 1140 gggtaggatt gtgggctcag tcaggaggcc acagaagttt gatcttactg gggacatgtt 1200 tgagatattt cccccggatt cgatggctga gaggcataga gttaatgtca cactacgcag 1260 gctgataact gagtgtgata tactaaatga tgctgatgtc ttggatataa tggagcatca 1320 tgtcggtgaa aagcacgtct ttgtttctgg cctcgtgtgt cattggttag gtctgggagt 1380 tgaaaccagt gtcgctgaca agatctacgt gttgtacttg gtaccccagg aacaatggag 1440 ccaattgctc agtgatttcc atagtatgat taggcttagt ggctggtttt gtaccaccaa 1500 gatctcagaa gaggagaaac agtctctaat gtacatgaac atgtacactg gaagggagat 1560 gtacgaacct gactgggaga aggtggttaa tgagaggaag gtagttgaag gaagcgagtt 1620 tgtgtccttt gaccctagat taaagagatg gacgagagcc caatatttag atgacttcga 1680 tttttgcctt caacatgcgt actcgcctat gatatcaaac cctagacctg tgaatgtcaa 1740 gaacttcttg gaattttgga aagcgaggag aacctgggtt gctaagggta gcacagtgat 1800 gaaccatctg ccgaaagaaa tgttaagtta cgtgattagg tttggtgata ggatggcaga 1860 tgttattagg atgaggcaca acaagaagag tttgttcgag aatcacgaga tcctagacct 1920 cataagagag actgctgata cgtggaactg ctcaaaggtc gttgctaagt tgaatgagac 1980 cgggaagagg cgtgagctgc tacctggaac gttgatgcat tacattgttt ttagttacgt 2040 gttgtacgtg gctgaagcac aagagcctgt tggaagtaca aggctcaatg ttaatgatga 2100 tgacaatttg gcctattacg atcgaaaaat ggggaatggt cttcatcata tgctgtatga 2160 ttggtccaac tttaatgctc agcactcaac tgatgacatg gcgaaggtta tacagtatct 2220 agctcggata cctggttgtc cggaggatta ttccactttc tgctgcgcta tagcagatag 2280 tttctaccac atgtgggtga tagatccaga cggcgataaa catgagatta agaaaggact 2340 attctcaggt tggcgtggga caacttggat caacacagtg ttgaaccacg tgtacgtggc 2400 aataggagtg atgtgttgtg aaagaatata cagagatttt aagccggcgt actttgatca 2460 cggcggtgat gatctggatg tgggattcat ggcaccgcag gattgttata agatgatggt 2520 ggtgatggat ttgatagggt atgaagcaac gaagattaaa cagatgatag ggtacgatgc 2580 tgagttctat cgtaatacca taacagctag aggcgtgttc gcaagtccca gtaggggttt 2640 agccaatttt gtcagtggta actgggagag tgggggagca aaaactttgc gagagaaagc 2700 tagtagcata cttgatcaag tgtggaagtt acaaagaagg ggggtcgagc cttggttctg 2760 taacaagcta acaagtatgg ctttgggaca ctggttgaaa ataaaaattg aggatgagtg 2820 gttcacactc aatgaggaaa taatacatgg cgaccctgca caaggcgggt tgggaatccc 2880 cgatgagagg ggggaaattt ggatcttaga caaaacggtg atcgtcgcca aggataagga 2940 cttaagtgcc ttcctaccgg gggcttattg tagctcggat tatgttgagg tagtagatag 3000 cgagctaaag ggatctttcc tgcatctaag gggaaaggag ggtttgataa acaaattagc 3060 ccaacagagt tatgacctag aacagtttga ggagagggac ttgtttagag aaatgaatag 3120 acagtcggtt aagaaggttg ggagcataat ggtgctcaca cctaggtgga atgaggtgat 3180 attttcagag tttcagcatt ggtgtgctga gggaggcaga gctttaaggt tagagaagat 3240 agagacgctg aaagagttcg taggtcacat attccacaat gaaagaagac tgacattgaa 3300 ggatttgatg acagttttta tgaatgagga ggtgacagaa aatgccatta attttaaggc 3360 aaatccttat tataggaggt tgctgccgga tttcctagct agtctagtgg ataagtttac 3420 tagatggtat ggtaataggt tagacctaac attggatgag atggagaaag tttacaccac 3480 tgtagcttat atgataagtg taatatatga gcatcatgca tagtcacatg taaggttata 3540 attcgtgagc ctgaggaaga gaaaccgttt gtacggtcgc tccacgagtc gccccgtaat 3600 gcgttaactt acggaaacac agtttaaata tatttgtc 3638 //