ID   JQ038239; SV 1; circular; genomic DNA; STD; VRL; 2781 BP.
XX
AC   JQ038239;
XX
DT   12-FEB-2012 (Rel. 111, Created)
DT   12-FEB-2012 (Rel. 111, Last updated, Version 1)
XX
DE   Tomato yellow leaf curl virus strain HNXX, complete genome.
XX
KW   .
XX
OS   Tomato yellow leaf curl virus
OC   Viruses; Geminiviridae; Begomovirus.
XX
RN   [1]
RP   1-2781
RA   Zhu X., Liu W.;
RT   ;
RL   Submitted (16-NOV-2011) to the INSDC.
RL   Department of Plant Pathology, Shandong Agricultural University, No. 61,
RL   Daizong Street, Tai'an, Shandong 271018, China
XX
DR   MD5; aea88bd9671106c563e31ecf290f495a.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2781
FT                   /organism="Tomato yellow leaf curl virus"
FT                   /host="Lycopersicon esculentum"
FT                   /strain="HNXX"
FT                   /mol_type="genomic DNA"
FT                   /country="China:Xinxiang, Henan province"
FT                   /collected_by="Zhu Xiao-ping and Liu Wen-hao"
FT                   /collection_date="Jul-2011"
FT                   /db_xref="taxon:10832"
FT   CDS             148..498
FT                   /codon_start=1
FT                   /product="AV2 protein"
FT                   /db_xref="GOA:Q2EI17"
FT                   /db_xref="InterPro:IPR002511"
FT                   /db_xref="InterPro:IPR005159"
FT                   /db_xref="UniProtKB/TrEMBL:Q2EI17"
FT                   /protein_id="AEZ67194.1"
FT                   /translation="MWDPLLNEFPESVHGFRCMLAIKYLQSVEETYEPNTLGHDLIRDL
FT                   ISVVRARDYVEATRRYNHFHARLEGSPKAELRQPIQQPCCCPHCPRHKQATIMDVQAHV
FT                   PEAQNIQNVSKP"
FT   CDS             308..1084
FT                   /codon_start=1
FT                   /product="AV1 protein"
FT                   /db_xref="GOA:H6WAD1"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="InterPro:IPR000650"
FT                   /db_xref="UniProtKB/TrEMBL:H6WAD1"
FT                   /protein_id="AEZ67195.1"
FT                   /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYSSRAAVPIVQGTNKRRSW
FT                   TYRPMYRKPRIYRMYRSPDVPRGCEGPCKVQSYEQRDDIKHTGIVRCVSDVTRGSGITH
FT                   RVGKRFCVKSIYFLGKVWMDENIKKQNHTNQVMFFLVRDRRPYGNSPMDFGQVFNMFDN
FT                   EPSTATVKNDLRDRFQVMRKFHATVIGGPSGMKEQALVKRFFRISSHVTYNHQEAAKYE
FT                   NHTENALLLYMACTHASNPVYATMKIRIYFYDSISN"
FT   CDS             complement(1081..1485)
FT                   /codon_start=1
FT                   /product="AC3 protein"
FT                   /db_xref="GOA:D5LNC3"
FT                   /db_xref="InterPro:IPR000657"
FT                   /db_xref="UniProtKB/TrEMBL:D5LNC3"
FT                   /protein_id="AEZ67196.1"
FT                   /translation="MDSRTGELISAPQAENGVFIWEINNPLYFKITEHSQRPFLMNNDI
FT                   ISIQIRFNHNIRKVLGIHKCFLNFRIWTTLQPQTGRFLRVFRYQVLKYLDSLGVISINN
FT                   VIRAVDHVLYDVLENTINVTETHDIKYKFY"
FT   CDS             complement(1226..1633)
FT                   /codon_start=1
FT                   /product="AC2 protein"
FT                   /db_xref="GOA:H6WAD3"
FT                   /db_xref="InterPro:IPR000942"
FT                   /db_xref="UniProtKB/TrEMBL:H6WAD3"
FT                   /protein_id="AEZ67197.1"
FT                   /translation="MQPSSPSTSHCSQVSIKVQHKIAKKKPIRRKRVDLDCDCSYYLHI
FT                   NCNNHGFTHRGTHLCSSSREWRFYLGDKQSPLFQDNRTQPEAISNEQRHHFHSDKIQPQ
FT                   HQEGIGDSQMFSQLPNLDDITASDWSFLKSI"
FT   CDS             complement(1542..2615)
FT                   /codon_start=1
FT                   /product="AC1 protein"
FT                   /db_xref="GOA:H6WAD4"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR001301"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="UniProtKB/TrEMBL:H6WAD4"
FT                   /protein_id="AEZ67198.1"
FT                   /translation="MPRLFKIYAKNYFLTYPSCSLSKEEALSQLKNIETPTNKKYIKVC
FT                   RELHENGEPHLHVLIQFEGKYQCKNQRFFDLVSPNRSAHFHPNIQAAKSSTDVKTYVEK
FT                   DGDFIDFGVFQIDGRSTRGGQQSANDAYAEALNSGSKSEALNILKEKAPKDYILQFHNL
FT                   SSNLDRIFSPPLEVYISPFLSSSFNQVPDELEEWVAENVVSSAARPWRPISIVIEGDSR
FT                   TGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKELMGAQRDWQS
FT                   NTKYGKPIQIKGGIPTIFLCNPGPTSSYREYLDEEKNIPLKNWALKNATFVTLYEPLFA
FT                   SINQGPTQDSQEETNKA"
FT   CDS             complement(2171..2464)
FT                   /codon_start=1
FT                   /product="AC4 protein"
FT                   /db_xref="InterPro:IPR002488"
FT                   /db_xref="UniProtKB/TrEMBL:D0VTP3"
FT                   /protein_id="AEZ67199.1"
FT                   /translation="MGNHISMCLSNSKANTNVRTNGSSTWYPQTGQHISIRTFRQLRAQ
FT                   QMSRPTWRKTETSLILEFSKSMADQLEEVNNLPTTHMPRHSIQAVNPRPSIY"
XX
SQ   Sequence 2781 BP; 756 A; 526 C; 609 G; 890 T; 0 other;
     accggatggc cgtgcctttt ctttttacgt ggtccccacg agggttacac agacgttact        60
     gtcaaccaat caaattgcat cctcaaacgc tagataagtg ttcatttgtc tttatatact       120
     tggtccccaa gtagtttgtc ttgcactatg tgggatccac ttctaaatga atttcccgaa       180
     tctgttcacg gatttcgttg tatgttagct attaaatatt tgcagtccgt tgaggaaact       240
     tacgagccca atacattggg ccatgattta attagggatc ttatatctgt tgtaagggcc       300
     cgtgactatg tcgaagcgac caggcgatat aatcatttcc acgcccgtct cgaaggttcg       360
     ccgaaggctg aacttcgaca gcccatacag cagccgtgct gctgtcccca ttgtccaagg       420
     cacaaacaag cgacgatcat ggacgtacag gcccatgtac cggaagccca gaatatacag       480
     aatgtatcga agccctgatg ttcctcgtgg atgtgaaggc ccatgtaaag tccagtctta       540
     tgagcaacgg gatgatatta agcatactgg tattgttcgt tgtgttagtg atgttactcg       600
     tggatctgga attactcaca gagtgggtaa gaggttctgt gttaaatcga tatatttttt       660
     aggtaaagtc tggatggatg aaaatattaa gaagcagaat cacactaatc aggtcatgtt       720
     cttcttggtt cgtgatagaa ggccttatgg aaacagccca atggattttg gacaggtttt       780
     taatatgttc gataatgagc ccagtaccgc aaccgtgaag aatgatttgc gggataggtt       840
     tcaagtgatg aggaaatttc atgctacagt tattggtggg ccctctggaa tgaaggaaca       900
     ggcattagtt aagagatttt ttagaattag cagtcatgta acttataatc atcaggaggc       960
     agccaagtat gagaaccata ctgaaaacgc cttgttattg tatatggcat gtacgcatgc      1020
     ctctaatcca gtgtatgcaa ctatgaaaat acgcatctat ttctatgatt caatatcaaa      1080
     ttaataaaat ttatatttta tatcatgagt ttctgttaca tttattgtgt tttcaagtac      1140
     atcatacaat acatgatcaa ctgctctgat tacattgtta attgaaatta caccaagact      1200
     atctaaatac ttaagaactt gatatctaaa tactcttaag aaacgaccag tctgaggctg      1260
     taatgtcgtc caaattcgga agttgagaaa acatttgtga atccccaata ccttcctgat      1320
     gttgtggttg aatcttatct gaatggaaat gatgtcgttg ttcattagaa atggcctctg      1380
     gctgtgttct gttatcttga aatagagggg attgtttatc tcccagataa aaacgccatt      1440
     ctctgcttga ggagcagaga tgagttcccc tgtgcgtgaa tccatgattg ttgcagttga      1500
     tgtggaggta gtatgagcag tcacagtcta ggtctacacg cttacgcctt attggtttct      1560
     tcttggctat cttgtgttgg accttgattg atacttgcga acagtggctc gtagagggtg      1620
     acgaaggttg cattcttgag agcccaattt ttcaagggta tgtttttttc ttcgtctaga      1680
     tattccctat atgaggaggt aggtcctgga ttgcagagga agatagtggg aattccccct      1740
     ttaatttgaa tgggcttccc gtactttgtg ttgctttgcc agtccctctg ggcccccatt      1800
     aattccttga agtgctttaa ataatgcggg tctacgtcat caatgacgtt gtaccacgca      1860
     tcattactgt acacctttgg gcttaggtct agatgtccac ataaataatt atgtgggcct      1920
     agagacctgg cccacattgt tttgcctgtt ctgctatcac cctcaatgac aatacttatg      1980
     ggtctccatg gccgcgcagc ggaagatacg acgttctcgg cgacccactc ttcaagttca      2040
     tctggaactt gattaaaaga agaagaaaga aatggagaaa tataaacttc taaaggagga      2100
     ctaaaaatcc tatctaaatt tgaacttaaa ttatgaaatt gtaaaatata gtcctttggg      2160
     gccttctctt ttaatatatt gagggcctcg gatttactgc ctgaattgag tgcctcggca      2220
     tatgcgtcgt tggcagattg ttgacctcct ctagttgatc tgccatcgat ttggaaaact      2280
     ccaaaatcaa tgaagtctcc gtctttctcc acgtaggtct tgacatctgt tgagctctta      2340
     gctgcctgaa tgttcggatg gaaatgtgct gacctgtttg gggataccag gtcgaagaac      2400
     cgttggttct tacattggta tttgccttcg aattggataa gcacatggag atgtggttcc      2460
     ccattctcgt ggagttctct gcaaactttg atatattttt tatttgttgg ggtttctatg      2520
     ttttttaatt gggaaagtgc ttcctcttta gagagagaac aactgggata tgttaggaaa      2580
     taatttttgg catatatttt aaataaacga ggcatgttga aatgaattgg tgtccctcaa      2640
     agctctatgg caatcggtgt atcggtgtct tacttatacc tggacaccta atggctattt      2700
     ggtaattttg taaaagtaca ttgcaattca aaattcaaaa ttcaaaaatc aaatcattaa      2760
     agcggccatc cgtataatat t                                                2781
//