ID   JQ038233; SV 1; circular; genomic DNA; STD; VRL; 2781 BP.
XX
AC   JQ038233;
XX
DT   12-FEB-2012 (Rel. 111, Created)
DT   12-FEB-2012 (Rel. 111, Last updated, Version 1)
XX
DE   Tomato yellow leaf curl virus strain HNMC, complete genome.
XX
KW   .
XX
OS   Tomato yellow leaf curl virus
OC   Viruses; Geminiviridae; Begomovirus.
XX
RN   [1]
RP   1-2781
RA   Zhu X., Liu W.;
RT   ;
RL   Submitted (16-NOV-2011) to the INSDC.
RL   Department of Plant Pathology, Shandong Agricultural University, No. 61,
RL   Daizong Street, Tai'an, Shandong 271018, China
XX
DR   MD5; d032e3cbaf7544469d3381b0162e9ced.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2781
FT                   /organism="Tomato yellow leaf curl virus"
FT                   /host="Lycopersicon esculentum"
FT                   /strain="HNMC"
FT                   /mol_type="genomic DNA"
FT                   /country="China:Macun, Henan province"
FT                   /collected_by="Zhu Xiao-ping and Liu Wen-hao"
FT                   /collection_date="Jul-2011"
FT                   /db_xref="taxon:10832"
FT   CDS             148..498
FT                   /codon_start=1
FT                   /product="AV2 protein"
FT                   /db_xref="GOA:Q2EI17"
FT                   /db_xref="InterPro:IPR002511"
FT                   /db_xref="InterPro:IPR005159"
FT                   /db_xref="UniProtKB/TrEMBL:Q2EI17"
FT                   /protein_id="AEZ67158.1"
FT                   /translation="MWDPLLNEFPESVHGFRCMLAIKYLQSVEETYEPNTLGHDLIRDL
FT                   ISVVRARDYVEATRRYNHFHARLEGSPKAELRQPIQQPCCCPHCPRHKQATIMDVQAHV
FT                   PEAQNIQNVSKP"
FT   CDS             308..1084
FT                   /codon_start=1
FT                   /product="AV1 protein"
FT                   /db_xref="GOA:Q17UU2"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="InterPro:IPR000650"
FT                   /db_xref="UniProtKB/TrEMBL:Q17UU2"
FT                   /protein_id="AEZ67159.1"
FT                   /translation="MSKRPGDIIISTPASKVRRRLNFDSPYSSRAAVPIVQGTNKRRSW
FT                   TYRPMYRKPRIYRMYRSPDVPRGCEGPCKVQSYEQRDDIKHTGIVRCVSDVTRGSGITH
FT                   RVGKRFCVKSIYFLGKVWMDENIKKQNHTNQVMFFLVRDRRPYGNSPMDFGQVFNMFDN
FT                   EPSTATVKNDLRDRFQVMRKFHATVIGGPSGMKEQALVKRFFRINSHVTYNHQEAAKYE
FT                   NHTENALLLYMACTHASNPVYATMKIRIYFYDSISN"
FT   CDS             complement(1081..1485)
FT                   /codon_start=1
FT                   /product="AC3 protein"
FT                   /db_xref="GOA:H6WA96"
FT                   /db_xref="InterPro:IPR000657"
FT                   /db_xref="UniProtKB/TrEMBL:H6WA96"
FT                   /protein_id="AEZ67160.1"
FT                   /translation="MDSRTGELIXAPQAENGVFIWEINNPLYFKITEHSQRPFLMNNDI
FT                   ISIQIRFNHNIRKALGIHKCFLNFRIWTTLQPQTGRFLRVFRYQVLKYLYSLGVISINN
FT                   VIRAVDHVLYDVLENTINVTATHDIKYKFY"
FT   CDS             complement(1226..1633)
FT                   /codon_start=1
FT                   /product="AC2 protein"
FT                   /db_xref="GOA:H6WA97"
FT                   /db_xref="InterPro:IPR000942"
FT                   /db_xref="UniProtKB/TrEMBL:H6WA97"
FT                   /protein_id="AEZ67161.1"
FT                   /translation="MQSSSPSTSHCSQVSIKVQHKIAKKKPIRRKRVDLDCGCSYYLHI
FT                   NCNNHGFTHRGTHXCSSSREWRFYLGDKQSPLFQDNRTQPEAISNEQRHHFHSDKIQPQ
FT                   HQEGIGDSQMFSQLPNLDDITASDWSFLKSI"
FT   CDS             complement(1542..2615)
FT                   /codon_start=1
FT                   /product="AC1 protein"
FT                   /db_xref="GOA:H6WA98"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR001301"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="UniProtKB/TrEMBL:H6WA98"
FT                   /protein_id="AEZ67162.1"
FT                   /translation="MPRLFKIYAKNYFLTYPNCSLSKEEALSQLKNLETPTNKKYIKVC
FT                   RELHENGEPHLHVLIQFEGKYQCKNQRFFDLVSPNRSAHFHPNIQAAKSSTDVKTYVEK
FT                   DGDFIDFGVFQIDSRSARGGQQSANDAYAEALNSGSKSEALNILKEKAPKDYILQFHNL
FT                   SSNLDRIFSPPLEVYISPFLSSSFNQVPDELEEWVAENVVSSAARPWRPISIVIEGDSR
FT                   TGKTMWARSLGPHNYLCGHLDLSPKVYSNDVWYNVIDDVDPHYLKHFKEFMGAQRDWQS
FT                   NTKYGKPIQIKGGIPTIFLCNPGPTSSYREYLDEEKNISLKNWALKNAIFVTLYEPLFA
FT                   SINQGPTQDSQEETNKA"
FT   CDS             complement(2171..2464)
FT                   /codon_start=1
FT                   /product="AC4 protein"
FT                   /db_xref="GOA:Q17UU4"
FT                   /db_xref="InterPro:IPR002488"
FT                   /db_xref="UniProtKB/TrEMBL:Q17UU4"
FT                   /protein_id="AEZ67163.1"
FT                   /translation="MGNHISMCLSNSKANTNVRTNGSSTWYPQTGQHISIRTFRQLRAQ
FT                   QMSRPTWRKTETSLILEFSKSIADQLEEVSNLPTTHMPRHSIQAVNPRPSIY"
XX
SQ   Sequence 2781 BP; 759 A; 528 C; 608 G; 885 T; 1 other;
     accggatggc cgcgcctttt ctttttatgt ggtccccacg agggttacac atacgtcact        60
     gtcaaccaat caaattgcat cctcaaacgt tagataagtg ttcatttgtc tttatatact       120
     tggtccccaa gtagtttgtc ttgcaatatg tgggatccac ttctaaatga atttcctgaa       180
     tctgttcacg gatttcgttg tatgttagct attaaatatt tgcagtccgt tgaggaaact       240
     tacgagccca atacattggg ccacgattta attagggatc ttatatctgt tgtaagggcc       300
     cgtgactatg tcgaagcgac caggcgatat aatcatttcc acgcccgcct cgaaggttcg       360
     ccgaaggctg aacttcgaca gcccatacag cagccgtgct gctgtcccca ttgtccaagg       420
     cacaaacaag cgacgatcat ggacgtacag gcccatgtac cggaagccca gaatatacag       480
     aatgtatcga agccctgatg ttcctcgtgg atgtgaaggc ccatgtaaag tccagtctta       540
     tgagcaacgg gatgatatta agcatactgg tattgttcgt tgtgttagtg atgttactcg       600
     tggatctgga attactcaca gagtgggtaa gaggttctgt gttaaatcga tatatttttt       660
     aggtaaagtc tggatggatg aaaatatcaa gaagcagaat cacactaatc aggtcatgtt       720
     cttcttggtt cgtgatagaa ggccctatgg aaacagccca atggattttg gacaggtttt       780
     taatatgttc gataatgagc ccagtaccgc aactgtgaag aatgatttgc gggataggtt       840
     tcaagtgatg aggaaatttc atgctacagt tattggtggg ccctctggaa tgaaggaaca       900
     ggcattagtt aagagatttt ttagaattaa cagtcatgta acttataatc atcaggaggc       960
     agccaagtat gagaaccata ctgaaaacgc cttgttattg tatatggcat gtacgcatgc      1020
     ctctaatcca gtgtatgcca ctatgaaaat acgcatctat ttctatgatt caatatcaaa      1080
     ttaataaaat ttatatttta tatcatgagt tgctgttaca tttattgtgt tttcaagtac      1140
     atcatacaat acatgatcaa ctgctctgat tacattgtta attgaaatta caccaagact      1200
     atataaatac ttaagaactt gatatctaaa tactcttaag aaacgaccag tctgaggctg      1260
     taatgtcgtc caaattcgga agttgagaaa acatttgtga atccccaatg ccttcctgat      1320
     gttgtggttg aatcttatct gaatggaaat gatgtcgttg ttcattagaa atggcctctg      1380
     gctgtgttct gttatcttga aatagagggg attgtttatc tcccagataa aaacgccatt      1440
     ctctgcttga ggagcagwga tgagttcccc tgtgcgtgaa tccatgattg ttgcagttga      1500
     tgtggaggta gtatgagcag ccacagtcta ggtctacacg cttacgcctt attggtttct      1560
     tcttggctat cttgtgttgg accttgattg atacttgcga acagtggctc gtagagggtg      1620
     acgaagattg cattcttgag agcccaattt ttcaaggata tgtttttttc ttcgtctaga      1680
     tattccctat atgaggaggt aggtcctgga ttgcagagga agatagtggg aattccccct      1740
     ttaatttgaa tgggcttccc gtactttgtg ttgctttgcc agtccctctg ggcccccatg      1800
     aattccttga agtgctttaa ataatgcggg tctacgtcat caatgacgtt gtaccacaca      1860
     tcattactgt acacctttgg gcttaggtct agatgtccac ataaataatt atgtgggcct      1920
     agagacctgg cccacattgt tttgcctgtt ctgctatcac cctcaatgac aatacttatg      1980
     ggtctccatg gccgcgcagc ggaagatacg acgttctcgg cgacccactc ttcaagttca      2040
     tctggaactt gattaaaaga agaagaaaga aatggagaaa tataaacttc taaaggagga      2100
     ctaaaaatcc tatctaaatt tgaacttaaa ttatgaaatt gtaaaatata gtcctttggg      2160
     gccttctctt ttaatatatt gagggcctcg gatttactgc ctgaattgag tgcctcggca      2220
     tatgcgtcgt tggcagattg ctgacctcct ctagctgatc tgctatcgat ttggaaaact      2280
     ccaaaatcaa tgaagtctcc gtctttctcc acgtaggtct tgacatctgt tgagctctta      2340
     gctgcctgaa tgttcggatg gaaatgtgct gacctgtttg gggataccag gtcgaagaac      2400
     cgttggttct tacattggta tttgccttcg aattggataa gcacatggag atgtggttcc      2460
     ccattctcgt ggagttctct gcaaactttg atatattttt tatttgttgg ggtttctagg      2520
     ttttttaatt gggaaagtgc ttcctcttta gagagagaac aattgggata tgttaggaaa      2580
     taatttttgg catatatttt aaataaacga ggcatgttga aatgaattgg tgtccctcaa      2640
     agctctatgg caatcggtgt atcggtgtct tacttatacc tggacaccta atggctattt      2700
     ggtaattttg taaaagtaca ttgcaattca aaattcaaaa ttcaaaaatc aaatcattaa      2760
     agcggccatc cgtataatat t                                                2781
//