ID JQ034351; SV 1; linear; genomic RNA; STD; VRL; 3571 BP. XX AC JQ034351; XX DT 20-MAR-2012 (Rel. 112, Created) DT 20-MAR-2012 (Rel. 112, Last updated, Version 1) XX DE Southern rice black-streaked dwarf virus isolate HuNyy segment 4, complete DE sequence. XX KW . XX OS Southern rice black-streaked dwarf virus OC Viruses; Riboviria; Reoviridae; Spinareovirinae; Fijivirus. XX RN [1] RP 1-3571 RA Zhu J.-Z., Zhou Q., Gao B.-D.; RT "The Complete Genome Sequence of Hunan Isolate of Southern rice RT black-streaked dwarf virus"; RL Unpublished. XX RN [2] RP 1-3571 RA Zhu J.-Z., Zhou Q., Gao B.-D.; RT ; RL Submitted (16-NOV-2011) to the INSDC. RL Plant Pathology, Hunan Agricultural University, Nongdalu, Changsha, Hunan RL 410128, China XX DR MD5; f3ac2e79b13cb657bdcec62394a1146d. XX CC GenBank Accession Numbers JQ034348-JQ034357 represent the complete CC genome of Southern rice black-streaked dwarf virus isolate HuNyy. XX FH Key Location/Qualifiers FH FT source 1..3571 FT /organism="Southern rice black-streaked dwarf virus" FT /segment="4" FT /host="rice" FT /isolate="HuNyy" FT /mol_type="genomic RNA" FT /country="China:Hunan, Yiyang city" FT /collection_date="2010" FT /db_xref="taxon:519497" FT CDS 15..3455 FT /codon_start=1 FT /product="P4" FT /note="ORF4; SRBSDVs4_gp1" FT /db_xref="UniProtKB/TrEMBL:H9BJU6" FT /protein_id="AFD23318.1" FT /translation="MLKVNVQALIYPFSGQITDIRRNQLIPTAKFKHTVLHQPIFITKL FT KNKFSSNDAPPTRNTLRVNPVWSNAFFDWNSALLNPWTVLPSSTGSGSMSIPSHKNVES FT GNAILKNAEFINERLPAYLKLLFDSLNLKENGYVNQFGFWALLYLDYSLHCLVPTEYYR FT QMLNLRTKENIIFLDTYNEVEYAISYLSRFNKILYVNGHGRKFVKLPSFGKLGFTFDKD FT TILGGIGNDLQYWTLWPLHNDYTQADTNRPNHANILRNLGQFNNELVGIHYYPTFFYEH FT YLYFETIQELVKHQIYNVVRTYHAQLKLQDNLGTNRLERRGYYLTAYSPFYELFIDAIA FT QEFGELYLYIQLFGAIPFNSGSPSGIPMTYSDFDSYYYRRFGHLKEFGKLTFENLTEKY FT NRSKLKPFQLFFVYDQMYQLMQTISPSLNLKPNLELIEFEEYGDGANLEDFDVNDVSAC FT RLIDYPLGDALPLNTLEVFPPNLFEVSEHIRMMFESRFLSPYAMYSLPLVPGGHDVLIQ FT TDESRLSDFRKNTAQRKVFKALQKQVLNSKNIFKKFVEPNLIKSSLSSADFLFWVVYSV FT ASSPKFTVNVKGELDVPPITADVDKLVYTSPNTSSFKLLSLFFQFLHEKTFVQLNQPMS FT IVFLGAKSEPVADMLYRLSHENWSIQRYGNDAEWPGKKANVLSINLKNVYDVAISDMDQ FT SIGSSVANITANTLRQLRVCLESFSKRLIFKLQYCLFHTLSSVTAILREYGAEIAASGH FT FIKLQIIRHAWSKVGSLEIFLIIDKVKTAESIPDDKELRKVVNTLGLSEPNQLFFTYMG FT TPRKYTLNDLNCKIFSVDITSEEMTNICSVFLNLSQCVSYGSSIYDKEHSNLTFFGTTN FT IQRIGLFMRNKQIYKALSITGSEHKPEGIFTPSLDFVIPGVREVLVLGDAQRMVGWKML FT KALHFDKGVLDVSLTAYDIGCRDYECAYMTVIDDDTILNYVGYDRASVLDVKRGITVVK FT AEVNRDKLTELCGLGHVFAFNSYYMGFSTRDELEKELNYIADTLVIKGFFFISFYAMHD FT DLKPVLKHHGFIDITSADVAADKFTFGRYHAVATVSVDFVEEWKAKMMTKYDVYQIFLS FT ANDVSFSCIMHGYSVNLDSMYFAPVYNLVSPCFLIHPKK" XX SQ Sequence 3571 BP; 1107 A; 565 C; 649 G; 1250 T; 0 other; aagttttttt caggatgttg aaagtaaatg tgcaggccct catttatcct ttcagcggac 60 aaattacaga cattagaaga aaccaactca ttccaactgc taaattcaaa cacactgtct 120 tacatcagcc tatttttatt acaaaactta aaaataaatt ctcatccaat gacgcccctc 180 caactcgaaa cactctacga gttaatcctg tttggtcaaa tgcttttttt gattggaatt 240 cagctttatt aaatccttgg actgtccttc cctcctcgac tggctctggc tcaatgtcaa 300 ttccatcaca taaaaatgtt gaatcaggca acgcaatttt gaaaaatgct gaattcatta 360 acgaacgtct tccagcttac ttaaagctgt tgtttgatag tttgaatttg aaagaaaatg 420 gatatgttaa tcaatttgga ttttgggctt tattatacct agattacagt ttgcattgtc 480 tcgtaccaac tgaatattat cgccaaatgt taaatctacg aacaaaggag aacataatat 540 ttttagacac gtataatgaa gtagaatatg caatttcata tttatctcga ttcaacaaaa 600 ttttatatgt taatggtcat ggtcgaaaat tcgttaaatt gccaagcttt ggaaaactag 660 gatttacttt tgataaagac accattctag gaggaattgg aaacgatctt caatattgga 720 cattatggcc tttacacaat gactatactc aagccgatac caacagacca aatcatgcga 780 acattttacg aaatttagga caattcaata atgagttagt tggtattcat tattatccta 840 ccttttttta tgaacattat ctttattttg aaaccattca agagttagtt aaacatcaaa 900 tatataacgt tgttcgtaca taccatgctc aattaaaatt acaagacaat ctcggtacta 960 atcgtttaga aagaagaggc tactatttga ctgcttacag tcccttttat gaattattca 1020 ttgacgcgat agctcaagag ttcggtgaat tatatctcta tatacaactg tttggtgcta 1080 ttccttttaa cagtggaagt cctagtggca ttcctatgac ttactcagat tttgattcct 1140 attattatcg tagatttgga catttgaaag aatttggaaa acttactttt gaaaatttaa 1200 ctgaaaaata caatagatct aaactcaaac ctttccaact gttttttgtt tatgatcaga 1260 tgtatcaact gatgcaaaca atatctccta gtttaaattt gaaacctaat cttgagctta 1320 ttgagtttga ggagtatggt gacggtgcta atttagaaga ttttgatgtt aatgatgtta 1380 gtgcatgccg gttgattgat tatcctttag gtgacgcatt acccttaaac actttagaag 1440 tattccctcc aaatttgttt gaagtttcag agcacattcg aatgatgttc gaaagccgtt 1500 ttctcagtcc ttatgcaatg tattctttgc ctttagttcc aggtggtcat gacgttttga 1560 ttcaaacaga tgagagtaga ttatccgatt ttcgtaaaaa cacagctcag aggaaagtat 1620 tcaaggcttt gcagaaacaa gttttaaatt ctaaaaacat ttttaagaaa tttgttgaac 1680 ctaatttaat aaaaagttcc ttgtcttcag ctgacttttt gttttgggtt gtttatagtg 1740 tagcatcttc accgaaattt acggtgaatg tcaaaggtga attagacgta cctccaatca 1800 cagcagacgt tgataaatta gtatacacat ctcctaatac ttcttctttc aaattattaa 1860 gcttattctt tcagtttttg catgagaaaa cttttgttca attaaatcaa cctatgagta 1920 tcgtctttct tggtgcgaag agtgaacccg ttgctgacat gttatatcgt ttatcgcatg 1980 agaattggag tattcaaagg tatggtaatg acgcggaatg gccaggtaaa aaagcaaatg 2040 ttctgtctat taatttgaaa aatgtgtatg acgtcgccat ttctgatatg gatcaaagca 2100 taggatctag tgttgcaaat attactgcga atactctaag acaattgaga gtttgtttag 2160 aatcatttag taaaagattg atttttaagt tgcaatactg tctatttcat actttgagtt 2220 cagtcactgc tattcttcgt gaatatggtg ctgagatagc tgcatcaggt cattttatta 2280 aattgcaaat cattcgtcat gcttggtcga aagtgggaag tttggaaata tttttgatta 2340 tagacaaggt taaaacagct gagtcaattc cggatgataa ggagttaagg aaagttgtga 2400 atactttagg attgagcgaa cctaatcagt tgttctttac atacatgggt acccctcgaa 2460 aatatacctt gaacgacttg aattgtaaaa tattcagcgt tgacataacc tctgaagaaa 2520 tgacaaacat ttgttctgta tttttaaatt tatctcaatg tgtcagttat ggttcttcca 2580 tttatgataa ggaacattca aatttaactt ttttcggaac gacaaatatt caaagaatcg 2640 gattgttcat gcgcaataaa caaatttaca aagctttgtc aattacaggt agtgaacaca 2700 agccagaagg aatttttaca ccctcattag attttgttat tcccggtgtt cgagaagttc 2760 tagtcttagg agatgctcaa cgtatggttg gatggaaaat gctgaaggct ttgcattttg 2820 ataaaggtgt tcttgatgtt agtttaactg catatgatat tggttgtcgt gattatgagt 2880 gtgcttatat gactgttatc gatgatgata ctattcttaa ttatgtggga tacgatagag 2940 cttctgtgct ggatgttaaa cgtggaatta cagttgttaa agctgaagtg aacagagaca 3000 agttaactga attgtgcggt ttaggacatg tcttcgcttt taattcttat tacatgggtt 3060 tttctacgag agacgaattg gagaaagaat tgaattacat tgctgataca ttagtgataa 3120 aaggtttctt tttcataagt ttttacgcaa tgcatgacga tttaaaacct gtattgaaac 3180 atcatgggtt tatagatata actagtgcgg atgtggctgc agataaattc acttttggaa 3240 gatatcatgc cgtcgctact gtcagtgtgg attttgtaga agagtggaaa gcaaaaatga 3300 tgactaaata tgacgtttat caaatctttt tatcagctaa tgatgttagt ttcagttgta 3360 tcatgcatgg ttattctgtc aatttagata gtatgtattt cgcgccggtt tataacttag 3420 tttctccttg tttcttaatt catcccaaaa aatgaacttt taatgtttgt gcatgagtct 3480 tggaaggata tgagatactg tcacatgcgc tcttccctag ccttttaaca taccgtgttg 3540 tggcggatta aacctgaaaa cagctgatgt c 3571 //