ID JQ034350; SV 1; linear; genomic RNA; STD; VRL; 3618 BP. XX AC JQ034350; XX DT 20-MAR-2012 (Rel. 112, Created) DT 20-MAR-2012 (Rel. 112, Last updated, Version 1) XX DE Southern rice black-streaked dwarf virus isolate HuNyy segment 3, complete DE sequence. XX KW . XX OS Southern rice black-streaked dwarf virus OC Viruses; Riboviria; Reoviridae; Spinareovirinae; Fijivirus. XX RN [1] RP 1-3618 RA Zhu J.-Z., Zhou Q., Gao B.-D.; RT "The Complete Genome Sequence of Hunan Isolate of Southern rice RT black-streaked dwarf virus"; RL Unpublished. XX RN [2] RP 1-3618 RA Zhu J.-Z., Zhou Q., Gao B.-D.; RT ; RL Submitted (16-NOV-2011) to the INSDC. RL Plant Pathology, Hunan Agricultural University, Nongdalu, Changsha, Hunan RL 410128, China XX DR MD5; 9dcacb95e812b0f2454f7fea6f3e92fe. XX CC GenBank Accession Numbers JQ034348-JQ034357 represent the complete CC genome of Southern rice black-streaked dwarf virus isolate HuNyy. XX FH Key Location/Qualifiers FH FT source 1..3618 FT /organism="Southern rice black-streaked dwarf virus" FT /segment="3" FT /host="rice" FT /isolate="HuNyy" FT /mol_type="genomic RNA" FT /country="China:Hunan, Yiyang city" FT /collection_date="2010" FT /db_xref="taxon:519497" FT CDS 34..3543 FT /codon_start=1 FT /product="P3" FT /note="ORF3; SRBSDVs3_gp1" FT /db_xref="UniProtKB/TrEMBL:H9BJU5" FT /protein_id="AFD23317.1" FT /translation="MDPVQVIKYLLSQNYETKLQQLEQWQQQMQAAGFTTEYLQRSSNV FT LNIRRRIEESRRRLFEISAKLWQGSLFTKTISPNNLFLGFSECSGVNKSLFDSKNCDFG FT RFSLNFHCIPKYWILSGIFNDLVCYDHHNVKVTVSKSSNKISFRINDFIYIVPTISNFS FT FLSDNPDIKIDENCAFDVFVRIFQSLSDVVMDVCNFTFNDELLNVEWKNTIIRFAGDAN FT YFSVSSNLIFNSIDDYLGRKCTSMRDYFCYAISMNNLEMINDSLNNWESKQLSHKKNLV FT NSLHQMNLNSMIKISSLEKEVARVKTLKISLSYPRTICLHIPTHKFFINKYSHDLFSSV FT FKTQFVGWNFTYGERDRTVEPFICDVETKLKTNSSIVSTASTSHFQCNDFGSPDNMFLL FT NVLDKDGNVKKVICEAVFSLKYKEFKYLGVKSLDEKTGYQSQVYFFGLSEIRLYTENPK FT LQVLSLVSEHEGKLCHVFYATTSLILSFKILAENIEYLGVTSPQFTSEFSYNGKPLKLS FT GKLTLSEEFDGAQRRKCLTSEEFVLNEDVKCVFTSFICNGQRSTTKTFYNNKPWPGIRS FT RYHDNDSYSSAIQATCHTLILNSPFRAYNNYSDILYSANDNVHYVEADGCFTERKNYLY FT WEVPISKFDMIYDDDPCVKLSNKSILTIPVTYRAFFEEVEGKFHPCLLSEVHFIYDYSV FT TQIGDAPELFLPFNKPVDIIYMEQSDGDEVSGELKIISFDVKDFNAYVLPENLNTTMNI FT VGRLLDYESELELVYQTNNVLSDMMNNFEKRLSDLEKFCAFLEKSYNKKSGDSSSLYHL FT LGDMFTFVGEICVLQFPILGFCFILTGIMVDAIGKITQEDIFDGISEIAFGGLLLCLGK FT RKPKFAYLQELGLDRRRASSNSYISDLASSIGRRRSYSSYHRYESINELSPSLSIKDRI FT FNQIRAHNPSVFDLHHNSGIILELKQKQKDNYSLLNSSYSRMKRSIGSTSHDDNLNYKL FT SCNNPESCELYELIVTTFDYYPILLNDNSFMIIKVQFKMRITSKPIMMKIEDIMFKYFH FT TSDSLGFNVFDESKYNDVKHLYDYFFRFSFDEIFNYLCVLSLLSKTSSFDNILVENFDK FT IYDTLYLTNHNSYMKNDAIHLRQVDSTIYKTMHGHSFSDQVPNESYFKMISTIVSHPEI FT LRF" XX SQ Sequence 3618 BP; 1189 A; 553 C; 600 G; 1276 T; 0 other; aagtttttat ccatgtcttt gaattgaaca gggatggatc cagtacaagt catcaaatac 60 cttttgtctc aaaattatga aaccaaatta caacaactcg aacaatggca acaacaaatg 120 caagcagcag gcttcacaac agaatactta caacgatctt cgaacgtgct aaacattaga 180 cgcagaattg aagaatctag aaggcgttta ttcgaaatca gtgctaaact atggcaaggt 240 agtctattta ctaaaaccat ttctcctaat aatttatttc tcggcttcag tgaatgctca 300 ggagtgaaca aatcactttt tgattctaaa aattgtgatt ttggaagatt cagtttaaac 360 tttcattgca tacctaaata ttggatatta tctggaatat ttaatgattt agtttgttat 420 gatcatcata atgtcaaagt cacagtaagc aaatcgtcaa ataaaatatc atttagaata 480 aatgacttta tttacatagt tccaaccata agcaacttct catttttatc tgacaatcca 540 gatatcaaaa ttgatgaaaa ctgcgcattt gacgtatttg tacgaatttt tcaatcatta 600 agcgatgttg ttatggacgt ttgtaatttt acatttaacg atgaattatt gaatgttgaa 660 tggaaaaaca caatcattcg ttttgccggc gatgctaact atttctcagt ttcttcaaac 720 ctcattttca atagtattga cgattattta ggtagaaaat gcacttcaat gagagattat 780 ttttgttacg caattagtat gaataacctg gaaatgatta atgactcctt aaataattgg 840 gaatccaaac aactgtcaca taaaaagaat ttagtaaaca gtcttcatca aatgaatctt 900 aattcaatga ttaaaatttc ttctttggaa aaggaagttg ctagagttaa gacgttaaaa 960 atatccttaa gttatcctcg tacgatttgt ttgcacattc cgacgcataa gttttttatt 1020 aataagtatt ctcatgactt attttcttca gtttttaaaa ctcaatttgt tggttggaat 1080 tttacatatg gtgaaagaga tagaactgtt gaacctttca tttgtgatgt tgaaacaaaa 1140 cttaaaacga attcttccat agtaagtaca gcatcaactt ctcactttca atgtaatgat 1200 tttggcagtc ctgataacat gtttttgcta aatgttttag ataaggatgg taacgttaaa 1260 aaagtaattt gcgaagctgt gttttcatta aagtacaaag agtttaaata tctgggagtt 1320 aaatctctcg atgaaaaaac aggatatcaa agtcaagttt atttctttgg tttgagtgaa 1380 attaggcttt atactgaaaa tccaaagttg caggttcttt cattagtgag tgaacatgaa 1440 ggtaaattat gtcatgtatt ttatgcaact acttctttaa ttttatcttt caaaattctg 1500 gctgaaaata tcgaatattt aggagttacg tctcctcaat tcacaagcga atttagttat 1560 aatggcaaac cattgaaact tagtgggaaa ttaactttaa gtgaggaatt cgatggagct 1620 caaaggagga aatgcttgac ttctgaagaa tttgttttaa acgaagatgt taaatgtgtg 1680 ttcacctcat ttatatgtaa cggtcaacgc tcgacaacca aaacattcta taacaacaaa 1740 ccttggcctg gtattcgtag cagatatcac gataatgatt cttattcaag cgccattcag 1800 gcgacctgtc acactttaat cttaaattca ccttttcgtg cttataataa ttatagtgat 1860 atattatact cggcgaatga taatgtacat tatgttgaag cggatggttg ctttactgaa 1920 aggaagaatt atctctattg ggaagttcca atttcaaagt tcgacatgat ctacgacgat 1980 gatccttgtg ttaagttgtc aaacaaaagc attctcacca ttccagtaac atatcgcgct 2040 ttctttgaag aagtggaagg taaatttcac ccttgtcttt tatctgaagt acatttcata 2100 tatgattatt ctgtgactca aattggtgac gctccagaat tatttcttcc tttcaataaa 2160 ccagttgata ttatttacat ggaacagtct gacggggatg aagtcagtgg ggagttaaaa 2220 attatatctt ttgatgttaa agactttaac gcttatgttt tacccgaaaa tctcaatacc 2280 actatgaata ttgtaggaag gttgttagat tatgaatctg aattagagct agtataccag 2340 actaataacg tcttgtctga tatgatgaat aattttgaaa aacgactatc tgatttagaa 2400 aaattttgcg cctttctcga aaaaagttat aacaaaaaat cgggtgattc ttcttctttg 2460 tatcatttgt taggtgacat gttcactttt gttggtgaaa tttgtgttct tcaatttcct 2520 attttagggt tttgtttcat tttgactggt ataatggttg atgctattgg aaaaattact 2580 caggaggata tattcgatgg gattagcgaa attgcatttg gaggcttact actttgttta 2640 ggtaaaagaa aacctaaatt tgcatacctt caagaacttg gtttagatag acgacgtgct 2700 tcctcgaatt cttatattag tgatcttgcg tcttctatcg gacgtcgaag aagttattct 2760 agttatcata ggtatgaaag tattaacgaa ttgagtcctt ctctttctat aaaagaccga 2820 atttttaatc aaattcgagc acataatcct agcgtgttcg acttgcatca taattcaggt 2880 atcattttag agttaaagca aaaacaaaaa gataattatt ctctcttaaa ctctagttat 2940 tcacgtatga agagatctat tggtagtacg tctcatgatg ataacctcaa ttacaagtta 3000 tcgtgtaata atccggaatc atgtgaattg tatgaactga tagtcaccac ttttgattac 3060 tatccaattc tgttaaatga taactctttc atgatcatca aagtccagtt taaaatgaga 3120 attacttcca aacctattat gatgaaaatt gaagacatta tgtttaaata ttttcacact 3180 agtgattccc ttgggtttaa cgtttttgat gaaagtaaat ataatgatgt taaacatctt 3240 tatgattact tttttagatt tagttttgat gagatattta attatttgtg tgtcttaagt 3300 ttattatcta aaacaagctc atttgataac atcctggttg aaaatttcga taaaatttac 3360 gacactcttt atctcacgaa tcataattca tacatgaaga acgatgctat tcatttacgt 3420 caagtcgatt ctacgattta taaaaccatg catggacatt cattttcaga tcaagtacct 3480 aatgaaagtt attttaaaat gatttcaact atagtctctc atccagagat tttgagattt 3540 taaggtactt tggttagcac gcggctggtg aaatctacga actgttggaa ttcgacacac 3600 atgggtacag ctatcgtc 3618 //