ID JQ034349; SV 1; linear; genomic RNA; STD; VRL; 3815 BP. XX AC JQ034349; XX DT 20-MAR-2012 (Rel. 112, Created) DT 20-MAR-2012 (Rel. 112, Last updated, Version 1) XX DE Southern rice black-streaked dwarf virus isolate HuNyy segment 2, complete DE sequence. XX KW . XX OS Southern rice black-streaked dwarf virus OC Viruses; Riboviria; Reoviridae; Spinareovirinae; Fijivirus. XX RN [1] RP 1-3815 RA Zhu J.-Z., Zhou Q., Gao B.-D.; RT "The Complete Genome Sequence of Hunan Isolate of Southern rice RT black-streaked dwarf virus"; RL Unpublished. XX RN [2] RP 1-3815 RA Zhu J.-Z., Zhou Q., Gao B.-D.; RT ; RL Submitted (16-NOV-2011) to the INSDC. RL Plant Pathology, Hunan Agricultural University, Nongdalu, Changsha, Hunan RL 410128, China XX DR MD5; cebe0308b1958de4695479810a0543c1. XX CC GenBank Accession Numbers JQ034348-JQ034357 represent the complete CC genome of Southern rice black-streaked dwarf virus isolate HuNyy. XX FH Key Location/Qualifiers FH FT source 1..3815 FT /organism="Southern rice black-streaked dwarf virus" FT /segment="2" FT /host="rice" FT /isolate="HuNyy" FT /mol_type="genomic RNA" FT /country="China:Hunan, Yiyang city" FT /collection_date="2010" FT /db_xref="taxon:519497" FT CDS 46..3726 FT /codon_start=1 FT /product="P2" FT /note="putative core capsid protein; ORF2; SRBSDVs2_gp1" FT /db_xref="UniProtKB/TrEMBL:H9BJU4" FT /protein_id="AFD23316.1" FT /translation="MNSEENRKKGAKQDEDEKKEPDKTQEAEEPAQEKQESQKSQEKTD FT SVDPDAVINQEGITNSSRPEEIKYKDGSTIQAKTALSVEAIMNIQGHLKQSDQKLVDEQ FT ANQYLTYLTSNVPSYTTTFGITDCADFQLIPFYRSIEFTDDNSQQFPSLFCFNTFVNQY FT YDTDMTTYESKRYFEIFKDHPALLRSSEAFPVNAYKVSVGWNGNSFAPEITDPTVIGDT FT SLIKNVSYVGVHSSDNYKDKKMFSRLKTFLEIAANCNLLLKGCRTKPLSIEYDNTLISK FT KLAGKKILYNDRAHIIFNGIYHSVTPFQKKINDMLMDGNTEIDFDKIYKFGRTIEQTIN FT TYDLICRGYGNTDQFAAYLINLATQRIRDHRMTANHYKTLMAANYPNRVSMHVFDTMID FT DLLFVYCPTEEDWKFSMFVIMIDKNIRSLLMNKSLSLMTSRNLFGQNDIGVKLTTLINN FT KNNSPTSREAVTYFMNVLAGGNIESFCQLLTAEMYARFIDFKVENTYVETEYLDILVLL FT EVLFAFIITPRLAWWNSHRFGRTLFDLMYTFCNDEWNKWEGEFGVFVKLQRGTWNKVNI FT SIDRYDLNDLLDGVVFSFLVQRQYTQKQLSDYPFISSIYNLIAPLGDYVNLTRKINAKY FT PFFETVVRGYLPCSAEDYKEASMINAVNTRVNAIGAAVHLVTKNYFSHNTVKTSVKESY FT NTLLNTIRIASNNLGLLMHYTVAPMLKTMYDSFLFVCDGFDKNSPWKRPRMIAYSGYNV FT LADTGNQNDNLVNLLKGKGITVPLTPLHCFSKLYTYVAIGVHGVCRNDTVTTTGSFLSR FT NFYDPNTINILPFDGQSITELALKVVGHSKRINTVFTIFNYLHKESTSEILSTVRERLS FT AFWTTSNGRAVLHEITRTFNCPVERYFEHENAFYTMDSDPRVYLPTLYASDANGNIDQV FT QPATCAVHKKYQYGDTYLESMLKVISHVTFDDDLPLFRQVEGLAFGYYSTGTSSPADFF FT NVENDTEYFTINLDDHPEVFTTTGTDGFSVQLKFKKDNVDHEYINPLSNAIPKIKFILK FT RLGNMNEHFVIFMKRMIDTRRHMVVLTDVIVDYNIVTLANWKDFKISDENIFNQFVLNR FT DLNNIQLNFYDTRFIIQNRTDELLDRYISLSYRNIVALKDFVVMGGIFGNPNQAIDKLT FT EIDKDVYCFGERNGHTSKYFISKKDKIKGSTVNFNNHFTYLGPQSETRLPILDIRVSSQ FT I" XX SQ Sequence 3815 BP; 1255 A; 655 C; 649 G; 1256 T; 0 other; aagtttttta ccggaccctt ggattcaccc aaaattaagg acgaaatgaa ttcggaggag 60 aaccgtaaaa aaggcgctaa acaagatgaa gatgaaaaga aagaaccaga taaaacgcaa 120 gaagcagaag aaccagctca agaaaaacaa gaatcacaga aaagtcaaga gaaaactgac 180 tcagtcgatc ctgacgctgt cattaatcaa gaaggaatta caaactcatc acgaccagaa 240 gaaattaaat ataaggatgg tagtacaatt caggctaaga ccgcactttc agttgaagcg 300 atcatgaaca tacaaggtca tttgaaacaa tcagatcaaa aacttgtcga cgaacaagca 360 aatcagtatc ttacatatct tacttcaaac gttccctcct ataccacaac atttggcatt 420 acagattgcg ctgacttcca actcatacct ttttatcgat ctattgaatt tacagatgat 480 aattctcaac aatttccttc attgttctgt tttaatactt tcgtaaatca atattatgat 540 actgatatga ctacttatga aagcaaaaga tattttgaaa tatttaaaga tcatcccgca 600 ttactacgtt caagtgaagc ttttcccgtt aatgcttata aagttagtgt tggatggaat 660 ggtaatagtt tcgcacctga aatcactgat cctactgtta ttggagatac atctttgata 720 aaaaacgttt cttatgtagg cgttcacagc tcagacaatt ataaagataa gaaaatgttt 780 tcgcgcttaa aaacattcct agaaattgct gctaattgta atttattatt aaaaggctgc 840 cgtactaaac ccttgtccat agaatatgat aacactttga tttctaaaaa gttagcagga 900 aaaaagattc tttacaatga cagagcgcac atcattttca atggtatcta tcactcagtt 960 actccattcc aaaagaaaat taatgacatg ttgatggatg gtaatactga aattgacttt 1020 gataaaatct ataaatttgg tcgtacaatt gaacaaacta ttaatactta tgatttaatt 1080 tgtcgtggat atggaaacac agaccaattt gctgcttatt tgatcaattt ggctacacaa 1140 agaattcgtg atcatagaat gaccgctaat cattataaga ctttgatggc tgctaattat 1200 cccaacagag ttagtatgca tgtttttgac accatgattg acgatttatt gtttgtttat 1260 tgtcctaccg aagaagattg gaaattcagt atgtttgtaa ttatgataga caagaacatc 1320 aggtctcttc ttatgaacaa atcgctatct ttgatgacct cgagaaattt atttggacaa 1380 aatgatattg gagttaagct tactacttta attaataaca aaaataatag tcctacttct 1440 agagaagctg taacttattt tatgaacgtg cttgcaggtg gaaacattga aagtttttgt 1500 caactcttaa ctgctgaaat gtatgctagg ttcattgatt ttaaagttga aaatacttac 1560 gtcgaaactg aatatttaga tattttggtg ttgcttgaag ttttatttgc tttcattatt 1620 acacctcgtt tagcttggtg gaacagtcac agattcggtc gtactctttt tgatttaatg 1680 tatacatttt gtaatgatga atggaataaa tgggaaggcg aatttggcgt atttgttaaa 1740 cttcaaagag gaacttggaa taaagtaaat atttctatag atcgttacga tttaaatgat 1800 ttgctagatg gcgtagtgtt tagtttttta gttcaaagac agtacactca aaaacaactt 1860 tctgattatc cttttataag ttccatttac aatcttattg ctcctttggg agactatgta 1920 aatctaacgc gaaaaattaa tgctaaatat ccattttttg aaaccgttgt tcgaggttac 1980 cttccttgct ctgctgaaga ttacaaagaa gctagtatga tcaatgctgt caacactcgt 2040 gttaacgcta tcggagctgc tgttcatttg gttactaaga attattttag tcataatact 2100 gtaaaaacat cagtcaaaga atcttataat actttgctga acaccattcg tatcgcctct 2160 aataatttag gactactgat gcattatact gttgctccca tgctaaaaac gatgtatgat 2220 tcttttttgt tcgtatgtga tggttttgat aagaatagtc cttggaaaag acctagaatg 2280 attgcttaca gcggttacaa cgtattggca gatactggaa atcagaatga caacctcgta 2340 aatctactta aaggcaaagg aatcaccgta cccttgactc ctcttcattg tttcagtaaa 2400 ttgtacactt acgttgctat tggcgttcat ggtgtttgta ggaacgatac agtaacaaca 2460 actggcagtt ttttgtctcg taatttttat gatcccaata cgattaacat cttgccattt 2520 gatggtcaat cgattactga attagcatta aaagttgtag gacacagcaa acgtatcaat 2580 actgtcttta caatattcaa ttatttgcac aaagagagca ccagtgagat tttgtcaact 2640 gttcgcgaac ggctttctgc tttttggact actagcaatg gaagagcagt tcttcatgaa 2700 atcactcgca cattcaattg ccctgtcgaa cgttattttg agcacgagaa tgctttttac 2760 actatggatt ctgatcctag agtgtatctt ccaactttat atgcttctga tgctaatgga 2820 aacatcgacc aagttcaacc cgctacttgt gctgttcaca aaaaatatca atatggcgac 2880 acttatctag aatccatgtt gaaagtgatt tctcatgtga cttttgatga tgacttacct 2940 ttatttcgtc aagttgaagg cttagctttt ggttattaca gtaccggcac atcttcaccc 3000 gcagacttct ttaacgtcga aaacgatact gaatatttca ctattaattt agacgatcat 3060 cctgaagtgt ttaccaccac tggtacagac ggtttcagtg ttcaattgaa attcaaaaaa 3120 gacaacgttg atcacgaata cattaatcca ctatctaacg ctattcctaa aataaaattt 3180 atcttgaaga gattaggtaa tatgaatgaa cattttgtaa ttttcatgaa aagaatgatt 3240 gatactagaa gacatatggt agttctaacc gatgtgattg ttgactataa cattgtcact 3300 ttagccaatt ggaaagactt taagataagt gacgagaaca tctttaacca atttgttttg 3360 aatcgtgatc tgaataacat tcaactaaac ttttacgata ctagattcat tattcaaaat 3420 cgtactgatg aattgctcga ccgttacatt agcttaagtt atcgtaacat tgtcgcttta 3480 aaagacttcg tagtaatggg aggtattttt ggtaatccta accaggccat tgacaaattg 3540 actgagatag ataaagacgt atactgtttt ggagaacgta atggtcatac ttcaaagtat 3600 tttatcagta aaaaagacaa gattaaagga agtaccgtta actttaacaa tcatttcact 3660 tatcttggac cacaatctga aactagactg cccattttgg atatcagagt ttcatctcaa 3720 atttaattaa catctttctc cttctttttc gatgtgtcta gctttttgcg gtgtattcta 3780 atggtcatcc acaaccggta aaaccagctg atgtc 3815 //