ID   JQ023166; SV 1; circular; genomic DNA; STD; VRL; 2459 BP.
XX
AC   JQ023166;
XX
DT   13-MAY-2012 (Rel. 112, Created)
DT   13-MAY-2012 (Rel. 112, Last updated, Version 1)
XX
DE   Pig stool associated circular ssDNA virus GER2011, complete genome.
XX
KW   .
XX
OS   Pig stool associated circular ssDNA virus GER2011
OC   Viruses; Smacoviridae; unclassified Smacoviridae.
XX
RN   [1]
RC   Publication Status: Online-Only
RP   1-2459
RX   PUBMED; 22514648.
RA   Sachsenroder J., Twardziok S., Hammerl J.A., Janczyk P., Wrede P.,
RA   Hertwig S., Johne R.;
RT   "Simultaneous identification of DNA and RNA viruses present in pig faeces
RT   using process-controlled deep sequencing";
RL   PLoS One 7(4):E34631-E34631(2012).
XX
RN   [2]
RP   1-2459
RA   Sachsenroeder J., Twardziok S., Janczyk P., Johne R.;
RT   ;
RL   Submitted (09-NOV-2011) to the INSDC.
RL   Food Hygiene and Safety Concepts, Federal Institute for Risk Assessment,
RL   Diedersdorfer Weg 1, Berlin 12277, Germany
XX
DR   MD5; 6cc52359d250aa08a87b7fa8678904e1.
DR   EuropePMC; PMC3326065; 22514648.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2459
FT                   /organism="Pig stool associated circular ssDNA virus
FT                   GER2011"
FT                   /host="Sus scrofa (domestic pig)"
FT                   /isolate="GER2011"
FT                   /mol_type="genomic DNA"
FT                   /country="Germany"
FT                   /isolation_source="feces"
FT                   /collection_date="2011"
FT                   /db_xref="taxon:1114942"
FT   CDS             complement(join(2316..2459,1..171))
FT                   /codon_start=1
FT                   /product="hypothetical protein"
FT                   /note="ORF5"
FT                   /db_xref="UniProtKB/TrEMBL:I1TE90"
FT                   /protein_id="AET85566.1"
FT                   /translation="MPETKLGESKSNIIRQVSFKHTSKLIVFPLSFRRNFTPKSVSFKV
FT                   SANGILPFLQFHSFVIPKTSTDHRPIRSIQRSPSGRINPLTPSQYTTTGGRGTLSATAY
FT                   "
FT   CDS             1..714
FT                   /codon_start=1
FT                   /product="putative replicase protein"
FT                   /note="Rep"
FT                   /db_xref="UniProtKB/TrEMBL:I1TE86"
FT                   /protein_id="AET85562.1"
FT                   /translation="MKLEEWKNAVSGYFERYAFGCEVAPETQRKHYQFRGVLKADLSND
FT                   IALALSELGLRHITPTSVRDFEYVYKDRNFYCSWEVFRPEYEKVQNSPHVWQVQLEELD
FT                   RDERTIEIIWDEKGNSGKTAWAMYQDYSHRAVYIPPLKRGLDLVACVLGKRESDWYIID
FT                   TPRAFEFNDDWACSIEQLKNGYVFDTRYSFRDKYLSVRPRVTILCNHMPDYENYFSADR
FT                   VLPFRITPEGYLWSV"
FT   CDS             805..1806
FT                   /codon_start=1
FT                   /product="putative capsid protein"
FT                   /note="Cap"
FT                   /db_xref="UniProtKB/TrEMBL:I1TE87"
FT                   /protein_id="AET85563.1"
FT                   /translation="MQVRISETYDLSTQVGKMGLVAIHTPSLYSINRLWGGLVKNFKFF
FT                   RFVNCDVTMACASMLPADPLQIGTEAGDIAPQDMFNPILYKAVSNDSFNNIVNRIMVYQ
FT                   DNSSTANSPSVVSVNSPNFGLSQTQTDFDLYYSLLADKNGWKKSMPQTGLSLKGLYPMV
FT                   FSVLNTLGHQGIPFWKTTPEISDDPDTVNTSPEIGKTSGVQGLGIGRFMRGPAMRMPRI
FT                   STAALNTSAPSMDDTDGTLQLQFFDVPPCYVAALVLLPAKLNRLYYRLKVTWTIEFTEP
FT                   RSLIEIMQFQMQADVGKLFYGTDYATQSKVATTTTSMVDTKDADVELVMEGA"
FT   CDS             830..1273
FT                   /codon_start=1
FT                   /product="hypothetical protein"
FT                   /note="ORF3"
FT                   /db_xref="GOA:I1TE88"
FT                   /db_xref="UniProtKB/TrEMBL:I1TE88"
FT                   /protein_id="AET85564.1"
FT                   /translation="MTSQHRSERWGLLQYTPLLCTVSTVFGADLSRTSSSLGSSTVMSQ
FT                   WLVHPCSQLTLSKLEQRLATLHLRICLILSCTRRFPMTRSTTSSTVSWFTRTILLLLTV
FT                   LPLFLLTVPISGFLRHRRISTSTILYSLIRMDGRSPCLRLDLA"
FT   CDS             1806..2132
FT                   /codon_start=1
FT                   /product="hypothetical protein"
FT                   /note="ORF4"
FT                   /db_xref="UniProtKB/TrEMBL:I1TE89"
FT                   /protein_id="AET85565.1"
FT                   /translation="MGWFSDGIDWYNKYINGASNAGWKAVMDLVGLDQADANRAQSLLS
FT                   DVPVIGDVLQLQQRQEQISDYLHNKDMDWSDVKYPALIGGGAGRSLTSSKNFVSKNIEK
FT                   LYRD"
XX
SQ   Sequence 2459 BP; 607 A; 568 C; 581 G; 703 T; 0 other;
     atgaaattgg aggaatggaa gaatgccgtt agcggatact ttgaaagata cgcttttggg        60
     tgtgaagttg cgcctgaaac tcagaggaaa cactatcagt ttagaggtgt gcttaaagct       120
     gacctgtcta atgatattgc tcttgctctc tccgagcttg gtctcaggca tattacccct       180
     acttcagtaa gggactttga atatgtctac aaggacagga atttctactg ctcttgggag       240
     gttttccgcc cggaatatga gaaggtgcag aactctcccc atgtctggca ggtgcagttg       300
     gaggaattag atcgtgacga aagaaccatt gaaatcatct gggatgaaaa aggaaactct       360
     ggaaagactg cgtgggctat gtatcaagat tactcccacc gtgcggtcta tatcccgcct       420
     ctcaaaagag gtcttgactt ggttgcttgt gttctcggta agcgtgaatc tgattggtac       480
     attatcgata caccccgcgc ttttgagttc aatgatgatt gggcttgttc tattgaacaa       540
     ttgaagaatg gctacgtttt cgacactcgc tattccttcc gtgacaagta tctctcagtt       600
     cgtcctaggg tcactattct ctgcaatcat atgccggact acgaaaacta ttttagtgct       660
     gacagggtat taccctttag gataacccca gaaggttatc tatggagtgt ctaaatatgg       720
     catactacag aaggtcttac aggaggactt acgcacgtcc tcgcaggaga acatacagga       780
     gaagctacag gaggtactga taccatgcag gtacgtattt ctgaaaccta tgacctctca       840
     acacaggtcg gaaagatggg gcttgttgca atacacaccc cttctctgta cagtatcaac       900
     cgtctttggg gcggacttgt caagaacttc aagttcttta ggttcgtcaa ctgtgatgtc       960
     acaatggctt gtgcatccat gctcccagct gaccctctcc aaattggaac agaggctggc      1020
     gacattgcac ctcaggatat gtttaatcct atcctgtaca aggcggtttc caatgactcg      1080
     ttcaacaaca tcgtcaaccg tatcatggtt taccaggaca attcttctac tgctaacagt      1140
     ccttccgttg tttctgttaa cagtcccaat ttcgggcttt ctcagacaca gacggatttc      1200
     gacctctact attctctact cgctgataag aatggatgga agaagtccat gcctcagact      1260
     ggacttagct tgaagggtct ttaccccatg gttttttccg ttctgaacac tctcggtcat      1320
     cagggaattc ctttctggaa gactacccct gagatctcgg acgaccctga tactgtcaat      1380
     acctctcctg aaatcggtaa aaccagcggt gttcagggtc ttggtattgg aaggttcatg      1440
     cgtggcccgg caatgaggat gcctcgtatc tctactgctg cactcaacac atctgctcct      1500
     agtatggatg atactgatgg taccttgcag ttgcagttct tcgatgttcc tccttgctat      1560
     gttgcagcgc tggttcttct tcctgcaaaa ctcaacaggc tctattacag gctgaaagtc      1620
     acatggacta ttgagttcac ggagccccgt agtctcattg agattatgca attccagatg      1680
     caggcagatg ttggaaagtt gttctacgga accgactatg ccacccagtc taaggttgca      1740
     accacgacta catccatggt cgatacaaag gatgcggatg ttgaacttgt catggaggga      1800
     gcttgatggg atggttctcc gatggcatcg attggtacaa taagtacatc aatggtgctt      1860
     ctaacgctgg atggaaggcg gtcatggatt tggtcggtct cgatcaggct gatgctaatc      1920
     gcgctcagtc ccttctttca gatgtgcctg tcatcgggga cgttctccaa ctccagcaga      1980
     gacaggagca gatttccgac tatcttcata acaaggacat ggattggtct gatgttaagt      2040
     accctgccct cattggcggt ggtgctggca ggtcattgac tagttccaag aactttgttt      2100
     ccaagaacat cgagaaactc tatcgggatt gacctccctc ttaaacctct tactttttct      2160
     aatttcccgt ccaagtatgt cttgtcctaa ctgtcacagc gacagcgttc tcagtctctg      2220
     taatttatcg ggcatatatc gacagttgga tattcaaaaa tcaaaagtta agattataat      2280
     atagaacaga gttctagacc ccaaggggaa ccctactagt acgcggtagc gctaagggtt      2340
     cccctccccc ccgtggtggt atattggcta ggtgtaagtg gattgatgcg accgcttggg      2400
     ctcctttgga tgctcctaat tggtcggtgg tctgtactgg tcttaggaat gacgaaact       2459
//