ID JQ012790; SV 2; linear; genomic DNA; STD; VRL; 2764 BP. XX AC JQ012790; XX DT 13-FEB-2012 (Rel. 111, Created) DT 05-APR-2013 (Rel. 116, Last updated, Version 2) XX DE Pedilanthus leaf curl virus-[Cestrum nocturnum], complete genome. XX KW . XX OS Pedilanthus leaf curl virus-[Cestrum nocturnum] OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2764 RA Raj S.K., Srivastava A., Kumar S., Snehi S.K.; RT "Molecular identification of a variant of Pedilanthus leaf curl virus on RT night-blooming jasmine (Cestrum nocturnum) and in India"; RL Unpublished. XX RN [2] RP 1-2764 RA Raj S.K., Srivastava A., Snehi S.K.; RT ; RL Submitted (10-NOV-2011) to the INSDC. RL Plant Molecular Virology, CSIR-National Botanical Research Institute, Rana RL Pratap Marg, Lucknow, U. P. 226001, India XX RN [3] RC Sequence update by submitter RP 1-2764 RA Raj S.K., Srivastava A., Kumar S., Snehi S.K.; RT ; RL Submitted (04-APR-2013) to the INSDC. RL Plant Molecular Virology, CSIR-National Botanical Research Institute, Rana RL Pratap Marg, Lucknow, U. P. 226001, India XX DR MD5; 2662a5c9adb117e58d26093b71de06b9. XX CC On Apr 4, 2013 this sequence version replaced gi:374922629. XX FH Key Location/Qualifiers FH FT source 1..2764 FT /organism="Pedilanthus leaf curl virus-[Cestrum nocturnum]" FT /host="Cestrum nocturnum (night-blooming jasmine)" FT /mol_type="genomic DNA" FT /country="India" FT /collected_by="S. K. Raj" FT /collection_date="17-Sep-2011" FT /note="originally submitted as Tomato leaf curl Pakistan FT virus-[Cestrum nocturnum]" FT /db_xref="taxon:1143714" FT gene 97..501 FT /gene="AV2" FT CDS 97..501 FT /codon_start=1 FT /gene="AV2" FT /product="pre-coat protein" FT /db_xref="GOA:M4YRF7" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:M4YRF7" FT /protein_id="AGI60333.1" FT /translation="MVPPINLVRKLCFTLTNVGSISDEFPETVHGFRCMLAVKYLQLVE FT NTYSPETKGYDLIRDLISVIRARNYVEATSRYNHFHARFEGTSPSQLRQPICEPCCCPH FT CPRHQGKGMGEQAHEQKAQDVQDVQKSRCS" FT gene 305..1075 FT /gene="AV1" FT CDS 305..1075 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /note="involved in encapsidation of virion" FT /db_xref="GOA:H6W0V1" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:H6W0V1" FT /protein_id="AFA26466.2" FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYASRAAAPIVRVTKARAWA FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDIQHIGKVMCVSDVTRGIGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP FT STATVKNVHRDRYQVLRKWHATVTGGQYASKEQALLKKFIRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVSN" FT gene complement(1072..1476) FT /gene="AC3" FT CDS complement(1072..1476) FT /codon_start=1 FT /gene="AC3" FT /product="replication enhancer protein" FT /note="increases viral replication" FT /db_xref="GOA:H6W0V2" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:H6W0V2" FT /protein_id="AFA26467.1" FT /translation="MDSRTGDIITAAQAESGVYIWEIRNPLYFKISEHHNRPFLMNQDI FT ITVQIQFNHNLRKALGIHKCFLVFRIWTNSQPPTGHFLRVFKTQVIKYLDNLGVICINN FT VIRAVDHVLWNVLEHVVYVDQSSSIKFNIY" FT gene complement(1217..1621) FT /gene="AC2" FT CDS complement(1217..1621) FT /codon_start=1 FT /gene="AC2" FT /product="transcription activator protein" FT /note="transcriptional activator for virus sense genes" FT /db_xref="GOA:H6W0V3" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:H6W0V3" FT /protein_id="AFA26468.1" FT /translation="MPPSSPSKAHSTQIPIKVQHRLAKRGTRRRRVDLPCGCSYFIALA FT CHNHGFTHRGYHHCSSSREWRVYLGDTKSPVFQDIRAPQQAIPDEPRHHHSPDTVQSQP FT EESVGDTQMLPSLPNLDELTASDWSFLKGL" FT gene complement(1524..2696) FT /gene="AC1" FT CDS complement(1524..2696) FT /codon_start=1 FT /gene="AC1" FT /product="replication-associated protein" FT /note="involved in virus replication" FT /db_xref="GOA:H6W0V4" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:H6W0V4" FT /protein_id="AFA26469.2" FT /translation="MPFGTHYILSTDIQVINIQNPIGTHLTKSMAPPKRFLIYAKNYFL FT TYPQCSLTKEEALSQFQNLSTPTNKKFIKICRELHEDGSPHLHVLIQFEGKYKCQNNRF FT FDLVSPTRSAHFHPNIQGAKSSSDVKSYMEKDGDTLDWGEFQIDGRSARGGQQSANDAY FT AAAINTGSKSEALRVIKEIAPKDYVLQFHNLNANLDRIFTPPVEVYVSPFCSSSFDQVP FT DELEEWAAENVVGSAARPLRPISIVIEGDSRTGKTMWARSLGPHNYMCGHLDLSPKVYN FT NDVWYNVIEDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSY FT KEFLDEEKNAALKNWALKNATFITLEGPLYSDSNQSAAQAGQEGDQASTS" FT gene complement(2150..2452) FT /gene="AC4" FT CDS complement(2150..2452) FT /codon_start=1 FT /gene="AC4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:M4YS23" FT /protein_id="AGI60334.1" FT /translation="MGLLISTCLSSSKGNTNARITDSSTWFPQPGQHISIRTFRELNQV FT PMSSPIWRRTETPLIGESFRSTEDLLEGVNSQPTTHTPQQLTQAVNQRLSESLRR" XX SQ Sequence 2764 BP; 737 A; 560 C; 647 G; 820 T; 0 other; accggacggc cgcgccattt ttatggcccc cccaccgcat taactgtctg taacatatgg 60 gcccatgaga atggtccctc ctagcctaat tatttaatgg tcccccctat aaacttagtg 120 cgcaagttgt gtttcacgct taccaatgtg ggatccatta gtgacgagtt tcccgaaacc 180 gttcacggtt ttagatgtat gttagcagtt aaatatttgc agctcgtaga aaatacgtat 240 tccccagaga ctaagggcta cgatttaatt agggatttaa tttcagtaat aagggctagg 300 aattatgtcg aagcgaccag cagatataat catttccacg cccgcttcga aggtacgtcg 360 ccgtctcaac ttcgacagcc catatgcgag ccgtgctgct gcccccattg tccgcgtcac 420 caaggcaagg gcatgggcga acaggcccat gaacagaaag cccaggatgt acaggatgta 480 cagaagtcca gatgttccta gaggatgtga aggcccatgt aaggtccagt catttgagtc 540 cagacatgat atccagcaca ttggtaaagt catgtgtgtt agtgatgtta ctcgtggtat 600 tgggcttacc cacagggtag gcaagagatt ttgtgttaag tccgtttatg ttctgggtaa 660 gatctggatg gatgagaaca ttaaaactaa gaatcatacg aatagtgtta tgttttttct 720 tgttagggat cgaaggcccg ttgataagcc tcaggatttt ggtgaggttt ttaatatgtt 780 tgataatgag cccagcacgg cgactgtgaa gaatgttcat cgtgataggt accaagtgtt 840 aaggaagtgg cacgcaactg tgactggcgg tcaatatgca tcgaaggagc aggctctctt 900 gaagaagttt attagggtta ataattatgt tgtgtacaac cagcaagagg ctgggaagta 960 tgagaatcat actgagaatg ctttgatgtt gtatatggcg tgtacgcacg cctctaaccc 1020 tgtgtatgct acattgaaga tacggatcta cttctacgat tcagtatcga attaataaat 1080 attgaatttt attgaagatg attggtctac atatacaaca tgctctaata cattccataa 1140 tacatgatca actgccctaa ttacattgtt aatacagata actcctaagt tatctaaata 1200 tttaataact tgagtcttaa agacccttaa gaaatgacca gtcggaggct gtgagttcgt 1260 ccagattcgg aagactagga agcatttgtg tatccccaac gctttcctca ggttgtgatt 1320 gaactgtatc tggactgtga tgatgtcttg gttcatcagg aatggcctgt tgtggtgctc 1380 ggatatcttg aaatacaggg gatttcgtat ctcccagata tacacgccac tctctgcttg 1440 agctgcagtg atgatatccc ctgtgcgtga atccatggtt gtggcaggct aatgctatga 1500 agtatgaaca cccacacggg agatcaactc gtcgacgcct ggtccccctc ttggccagcc 1560 tgtgctgcac tttgattgga atctgagtag agtgggcctt cgagggtgat gaaggtggca 1620 ttctttaaag cccaattttt aagtgcagca tttttctctt catccaagaa ctctttatag 1680 ctggaattgg gtcctggatt gcagaggaag atagtgggaa tgccaccttt aatttgaact 1740 ggctttccgt attttgtgtt tgattgccag tctctttggg cccccatgaa ttctttaaag 1800 tgctttaggt agtggggatc gacgtcttca atgacgttgt accagacatc attattgtag 1860 acctttgggc taaggtccag atgaccacac atataattat gtggacccag tgacctagcc 1920 cacatcgtct tccccgtacg actatcgccc tctatcacta tacttatggg tctcaatggc 1980 cgcgcagcgg aacctaccac attttcagca gcccattcct caagttcatc tggaacttga 2040 tcaaaagaag aagaacagaa aggagaaaca taaacctcta ccggaggtgt aaaaatccta 2100 tctaaattag catttaaatt atgaaattgt aatacataat ctttgggagc tatctcctta 2160 atgactctga gagcctctga tttactgcct gtgttaattg ctgcggcgta tgcgtcgttg 2220 gctgactgtt gaccccctct agcagatctt ccgtcgatct gaaactctcc ccaatcaagg 2280 gtgtctccgt ccttctccat ataggacttg acatcggaac ttgatttagc tccctgaatg 2340 ttcggatgga aatgtgctga cctggttggg gaaaccaggt cgaagaatct gttattctgg 2400 catttgtatt tcccttcgaa ctggataagc acgtggagat gaggagaccc atcttcgtga 2460 agctctctgc agattttgat gaatttttta ttggtgggtg tggagaggtt ttgaaattgg 2520 gaaagtgctt cttctttggt gagtgagcac tgtggatatg tgaggaaata atttttggca 2580 tatattaaaa aacgttttgg aggagccatt gacttggtca aatgggtacc aattgggttc 2640 tggatgttta tcacctgtat atcggtactc aatatatagt gagtaccaaa tggcataatt 2700 gtaataaaag aactctaatt tgaaattcaa acgaaaaggc taaagcggcc atccgtctaa 2760 tatt 2764 //