ID   JQ005047; SV 1; linear; genomic RNA; STD; VRL; 1765 BP.
XX
AC   JQ005047;
XX
DT   20-MAR-2012 (Rel. 112, Created)
DT   13-JUN-2012 (Rel. 113, Last updated, Version 2)
XX
DE   Prunus necrotic ringspot virus isolate Pch1 movement protein and coat
DE   protein genes, complete cds.
XX
KW   .
XX
OS   Prunus necrotic ringspot virus
OC   Viruses; Riboviria; Bromoviridae; Ilarvirus.
XX
RN   [1]
RP   1-1765
RA   Cui H.G., Hong N., Wang G.P., Wang A.M.;
RT   "Detection and genetic diversity of Prunus necrotic ringspot virus in the
RT   Niagara Fruit Belt, Canada";
RL   Can. J. Plant Pathol. 34(1):104-113(2012).
XX
RN   [2]
RP   1-1765
RA   Cui H., Hong N., Wang G., Wang A.;
RT   ;
RL   Submitted (08-NOV-2011) to the INSDC.
RL   Southern Crop Protection and Food Research Centre, Agriculture and
RL   Agri-Food Canada, 1391 Sandford St, London, Ontario N5V 4T3, Canada
XX
DR   MD5; f98026f232d348d45cfb2140b51e868a.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1765
FT                   /organism="Prunus necrotic ringspot virus"
FT                   /segment="RNA3"
FT                   /host="peach"
FT                   /isolate="Pch1"
FT                   /mol_type="genomic RNA"
FT                   /country="Canada"
FT                   /collected_by="Hongguang Cui"
FT                   /collection_date="May-2011"
FT                   /identified_by="Hongguang Cui"
FT                   /db_xref="taxon:37733"
FT   5'UTR           <1..39
FT   CDS             40..891
FT                   /codon_start=1
FT                   /product="movement protein"
FT                   /db_xref="GOA:H9BER4"
FT                   /db_xref="InterPro:IPR002538"
FT                   /db_xref="UniProtKB/TrEMBL:H9BER4"
FT                   /protein_id="AFD32231.1"
FT                   /translation="MAGVSKNPSTSDFSVVECSMDEMSQISEDLHKLMLSDEMKALPTK
FT                   GCHILHLVNLPKSNVLRLASKEQKGFLSRQADKVKNKIYRCVGRIFLVYVPIIQATTSG
FT                   LITLKLQNSDTGEISDVVTDVEANRAFVIMDRWGRSLVESADLNLLYSISCPDVRPGAR
FT                   VGEMMAFWDERMSRQQTYLEKGNPILFPIAETKPSKYLNDKKILMSMVRSRILAGTEGC
FT                   DIGPENIEVKRLGDNRKVLTIQPKAPIVEEVKEKDEPTGSNGESHMEEKTVTVKVGSSG
FT                   SA"
FT   CDS             966..1640
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /db_xref="GOA:H9BER5"
FT                   /db_xref="InterPro:IPR002681"
FT                   /db_xref="UniProtKB/TrEMBL:H9BER5"
FT                   /protein_id="AFD32232.1"
FT                   /translation="MVCRICNHTHAGGCRSCKKCHPNGALVPLRAQQRAANNPNRNPNR
FT                   ASSGTGPVARPQPVVKTTWTVRGPNVPPRVPKGFVAHNHREVMTTEAVKYLSINFTTTL
FT                   PQLMGQNLTLLTVIVRMNSMSSNGWIGMVEDYKVEQPDGPNALSRKGFLKDQPRGWQFE
FT                   PPSDLDFDTFARTHRVVIEFKTEVPAGAKVLVRDLYVVVSDLPRVQIPTDVLLVDEDLL
FT                   EI"
FT   3'UTR           1641..>1765
XX
SQ   Sequence 1765 BP; 477 A; 362 C; 467 G; 459 T; 0 other;
     tattcgtaat tccacttgtt ggttgaatag tgtttcagta tggccggtgt cagtaaaaac        60
     ccctccacta gtgatttttc agtagtggag tgttctatgg acgaaatgag ccagatatca       120
     gaggatttgc ataaacttat gctatccgat gagatgaagg cgttaccaac gaaaggttgt       180
     catatcctgc atttggttaa cctcccgaaa tccaatgttc taagattagc gagcaaggaa       240
     cagaaaggtt tcctctcgcg acaggccgac aaagtaaaga ataagattta cagatgtgta       300
     ggccgcatat tcctcgttta cgtaccgatc atacaggcaa cgacttcggg cttaataacc       360
     cttaagttgc agaactccga tacaggagaa atttcagacg tcgtgacaga cgtcgaagcc       420
     aatcgtgcct ttgttattat ggacagatgg ggaagatccc tggtagagtc agcagacttg       480
     aatctgttgt attctatttc atgtccggac gtccgacctg gagccagagt gggagagatg       540
     atggcttttt gggatgagag gatgtcgagg cagcagactt acttggagaa agggaatcct       600
     attttattcc cgattgctga gacaaaacct tcgaaatatc ttaatgataa gaagattttg       660
     atgtcgatgg tccgaagtag gatattggca ggtacagaag ggtgcgatat aggccccgag       720
     aatatagaag ttaaacgatt aggggacaat agaaaggttt tgactattca accgaaagcc       780
     ccgattgtag aggaagttaa ggaaaaagat gaaccgacag gttcgaatgg tgaaagtcat       840
     atggaagaga agactgtgac cgttaaggtc ggtagttctg gaagtgcttg agtgactgtg       900
     tcacgagcga gcgcctttgc gcgagcgttt ttctttcttt cttccgaatt tcttttcacc       960
     caacaatggt ttgccgaatt tgcaatcata cccacgctgg tggatgccgt tcttgcaaga      1020
     agtgccatcc gaatggagct ctggtcccac tcagggctca acagagggct gcgaataacc      1080
     cgaatagaaa cccgaatagg gcttcgagtg gtaccggacc agtggcccga ccacaaccgg      1140
     tcgtgaagac cacctggacc gtgagaggtc cgaatgtgcc tccccgagtt cctaaggggt      1200
     ttgtagcaca caatcaccga gaggtgatga cgacagaggc agtgaagtac ttgagcataa      1260
     acttcacgac cactctccct cagttgatgg gtcagaattt gaccctattg actgttatag      1320
     tccgaatgaa ctctatgagt tcgaatggtt ggattgggat ggtggaggac tataaggtgg      1380
     aacaacctga tggtccgaat gccctgtcta ggaaggggtt cttgaaggac caaccgagag      1440
     gttggcagtt cgaacctcct tccgatttag atttcgacac ttttgcgcgt acgcatcgtg      1500
     tcgttatcga attcaagacc gaagtgcccg ctggggccaa ggtcttggtt agggatttgt      1560
     acgtagtggt aagtgattta ccacgagtgc aaattccgac tgatgtcttg ctggtcgatg      1620
     aagacctgct tgagatctag agtgagataa gcacactcga attttctccg aatggaaagt      1680
     tcgcaccacc gatagtggat actgcgaatt agatttctga aggtcgcttc ccgactttca      1740
     tgcttggaaa tcttacctgc gttag                                            1765
//