ID JQ001816; SV 1; linear; genomic RNA; STD; VRL; 6129 BP. XX AC JQ001816; XX DT 11-MAR-2013 (Rel. 116, Created) DT 11-MAR-2013 (Rel. 116, Last updated, Version 1) XX DE Watercress white vein virus isolate 20903772 movement protein, RNA DE polymerase, and capsid protein genes, complete cds. XX KW . XX OS Watercress white vein virus OC Viruses; Riboviria; Tymovirales; Tymoviridae; Tymovirus; OC unclassified Tymovirus. XX RN [1] RP 1-6129 RA Adams I.P., Harju V., Glover R., Monger W., Clarke J., Skelton A., RA Forde S., Bennett S., Fox A., Boonham N.; RT "Watercress white vein virus: A new virus of watercress"; RL Unpublished. XX RN [2] RP 1-6129 RA Adams I.P., Harju V., Glover R., Monger W., Clarke J., Skelton A., RA Forde S., Bennett S., Fox A., Boonham N.; RT ; RL Submitted (06-NOV-2011) to the INSDC. RL Plant Protection, Food and Enviroment Research Agency, Sand Hutton, York RL YO411LZ, UK XX DR MD5; 2112b61f4d58337bd1e968548c497804. XX CC ##Assembly-Data-START## CC Assembly Method :: CLC genomics workbench v. July 2011 CC Sequencing Technology :: Sanger dideoxy sequencing; 454 CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..6129 FT /organism="Watercress white vein virus" FT /host="Nasturtium officinale" FT /isolate="20903772" FT /mol_type="genomic RNA" FT /country="Spain" FT /collection_date="2009" FT /db_xref="taxon:1111988" FT CDS 28..1911 FT /codon_start=1 FT /product="movement protein" FT /db_xref="InterPro:IPR004935" FT /db_xref="UniProtKB/TrEMBL:M4GPM0" FT /protein_id="AFC95825.1" FT /translation="MNNGLPTSIGRPCPDNTSGSIPPSHPGVDSGLYPLLHHHLPLGRA FT QALTAATQQLRYPNIWFGNFSPPPRRPQDDRDFSPSHPLVFPGHNSQLSHVYEAKQVPQ FT TRFRQPQLQRAEELQAPPQRLHSLPNHIPGPPIPSDGVHARRPHVLSPLPNSSPLPSQT FT ELGKALRQPRGPPRGPPIGPLLLPPALPLLHHQKHPPLRPRRPRSRKLQPARRRPVMAE FT DKRAFTRRPPPKCNDPGILGPRPLTSDSTRCTSPRPGATVPPSPDWSRPLLLLPPTPNR FT PRVLPNSRCRSPPGSHFPGSTSPPPPRSSNSVQRPLHLHSSSSHPPHLRPRRLCSDALV FT QAGTRLGDTNRLGQSPDLRPPQRSPPPERSVPRPSKPARRPEALPEATLATTRRHRRSY FT PLLPNPPSALPPTVFASSRGKIHLSLPQRSVPKERVTPLLPPLPSLPPSQNLLPGDTTS FT QAQLPTRVSPTLPSSASSQLTPTSGPTFGHDPPLLPQTETPSAPRRTFLDPEKLRAALA FT SIPSAPGDLGTLDTRSQNDVPSSPPSSTRHLPSAHAPWILRTPMGEDTLETLSIDSFSS FT FHSYDLYSPSGIIPSHHRPPFLEHERSPSPPLHSPLSSPCSYDYGSAPDTD" FT CDS 35..5521 FT /codon_start=1 FT /product="RNA polymerase" FT /db_xref="GOA:M4GQ26" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR008043" FT /db_xref="InterPro:IPR027351" FT /db_xref="UniProtKB/TrEMBL:M4GQ26" FT /protein_id="AFC95826.1" FT /translation="MAFQLALDALAPTTHRDPSLHPILESTVDSIRSSITTYPWAVPKL FT LLPLLNSYGIPTSGLGTSHHPHAAHKTIETFLLHIHWSFQATTPSSVMFMKPSKFHKLA FT SVNPNFKELKNYRLHPNDSTRYPTTSPDLPSHPTVFMHDALMYYHPSQILHLFQAKPNL FT EKLYASLVVPPEALLSDHSFYPQLYRYSTTRNTLHYVPEGHEAGSYNQPADALSWLRIN FT ELSLDDLHLSVTILESWGPVHSLLIQRGVPHPDPALLSPLPLTGHDLFSSYHQPRIDLV FT SFRTPDAVALPEATFLDQPLRHRLVPRTVYNALFTYTRAVRTLRTSDPAAFVRMHSSKP FT EHDWVTPTAWDNLQTFALLNVPLRPNVVYHVLQSPLAALKLYLKQHWRRLAATAAPILS FT SLTLLQHFLPLSLPLPEVKSICLFHKEVYRKRELLPSFHPFQVCPPLRTFFQETLRVKP FT NCRPGSPQHFLLQRVLNSLRPLAPLLAMTPLYSRKPKPLLPHAELSWTLKSFALPWQAS FT LALLAISELSILVHKMTSPPALQAQHDIYHRHMHPGSYVLQWERTPLRLSRSTAFLPFT FT PTISTAPLASSQAITAPLFSNMNARPLPPSTHPSRPPAPTTTEVLQTQTESPPNHSLPD FT QPFTTPPSLSPTAHPPTSPHPPPPHPSSDDAPLRPDPLAMFPELIPASNPSSSRPAVPP FT GTHPAPPTAPTTAARSIPPALLPPPLPSDHTAVGPVLPFHQLHPRNYPPNTADYHTRLR FT VLPPSPLPHPILNCLLTAVSLQTNVSEEHLWHSLQTILPDSQLDNDEVRTFGLSTDHLT FT ALAHLYNFQARVHSDHGQLLFGPHDSAQRINITHTVGPHPTSPPALDSSAVPRPNPPEP FT SHPLVRAMKSFKVSDHYLPFLEAHRHPTSISHAKNLVSNMKNGFDGVLSLIDVSSNPRP FT GHTPRERIIELDRHLDTNPEKTVPLVHIAGFAGCGKTHPIQKLLQSKLFKDFRVSCPTT FT ELRNEWKSSMSLPGNQSWRFCTWESSLLKSSKILVIDEIYKMPRGYLDLSILSDPAVEL FT VIILGDPLQGEYHSLSKDSSNHRLPSETIRLVDYIDAYCWWSYRIPQVIARLFSITSFN FT YDTGIIGSIPTPVDCHPILTNSHAAALTFNNLGYRACTISSSQGITLSDPAVIVLDNYT FT RYLSASNGLVALTRSRTGVQFMGPTTYIGGTNGSSAMFSDAVNRTPINLDQYFPSLFHR FT LPLIHSPIQSRLLRLTGATPSSSPTFRSTNFHLPPHVPLSYSSDFVALNPSLDPKVLDS FT RLETHFLPPSRLPLHFDLESPSLPPPAPSKPEPTLPKATACYPGENFESLAAFFLPAHD FT PAQREILYRDQSSNQFPWFDRPFSLSCQPSSLISAKHSPASDPTLLPASINKRLRFRPS FT EAPHAITSDDVILGLQLFHSLCRAYNRQPSQSIPFNPELFADCISLNEYAQLSSKTQAT FT IVANASRSDPDWRHTTVKIFAKAQHKVNDGSIFGPWKACQTLALMHDFVILVLGPVKKY FT QRIFDNSDRPEHIYSHCGKTPIQLRDWCQQHLTSFTPKVANDYTAFDQSQHGESVVLEA FT LKMKRLNIPAHLIELHVHLKTNVSTQFGPLTCMRLTGEPGTYDDNTDYNLAVIFSQYEV FT GSCPIMVSGDDSLIDRVLPTRSDWPDVLKRLHLKFKLEHTTNPLFCGYYVGPAGCLRNP FT LALFCKLMIAVDDDALPDRRLSYLTEFTTGHRLGEPLWSLLPSELVKYQSACFDFFCRH FT CPKHEKMLLSDEPPTASLLDRVTSSPRWLTKNAMYLLPAKLRLAISSLSQVQSFPESPE FT VSQVESELLHYLQ" FT CDS 5537..6106 FT /codon_start=1 FT /product="capsid protein" FT /db_xref="GOA:M4GPD5" FT /db_xref="InterPro:IPR000574" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:M4GPD5" FT /protein_id="AFC95827.1" FT /translation="MDIDKELAPQDKTLTVSSVLPPSPGPRPPVIRQVFQSEILFAGTK FT DADASVTIANIDSVANLTSLYRHASLDSLWVTIHPTLQAPAFPTTVGICWVPANSPITS FT TQITKTFGGQIFCIGGSINTLQPLIIHCPLEMMNRRVKDSIQYLDSPKLIISVTAQPTA FT PAASTCIITVSGTISMHSPLITDTSS" XX SQ Sequence 6129 BP; 1312 A; 2506 C; 1024 G; 1287 T; 0 other; cttgcaaccc tcgtaagaca attgcaaatg aacaatggcc ttccaactag cattggacgc 60 ccttgccccg acaacacatc gggatccatc cctccatccc atcctggagt cgacagtgga 120 ctctatccgc tcctccatca ccacttaccc ttgggccgtg cccaagctct tactgccgct 180 actcaacagt tacggtatcc caacatctgg tttgggaact tctcaccacc cccacgccgc 240 ccacaagacg atcgagactt ttctccttca catccattgg tctttccagg ccacaactcc 300 cagctcagtc atgtttatga agccaagcaa gttccacaaa ctcgcttccg tcaaccccaa 360 cttcaaagag ctgaagaact acaggctcca ccccaacgac tccactcgtt acccaaccac 420 atccccggac ctcccatccc atccgacggt gttcatgcac gacgccctca tgtactatca 480 cccctcccaa attcttcacc tcttccaagc caaaccgaac ttggaaaagc tctacgccag 540 cctcgtggtc cccccagagg ccctcctatc ggaccactcc ttctaccccc agctttaccg 600 ctactccacc accagaaaca ccctccacta cgtcccagaa ggccacgaag ccggaagtta 660 caaccagccc gcagacgccc tgtcatggct gaggataaac gagctttcac tcgacgacct 720 ccacctaagt gtaacgatcc tggaatcctg gggccccgtc cactcacttc tgattcaacg 780 cggtgtacct caccccgacc cggcgctact gtcccccctt cccctgactg gtcacgacct 840 cttctcctcc taccaccaac cccgaatcga cctcgtgtcc ttccgaactc cagatgccgt 900 agccctcccg gaagccactt tcctggatca acctctccgc caccgcctcg ttcctcgaac 960 agtgtacaac gccctcttca cttacactcg agcagttcgc accctccgca cctccgaccc 1020 cgccgccttt gttcggatgc actcgtccaa gccggaacac gactgggtga caccaaccgc 1080 ttgggacaat ctccagacct tcgccctcct caacgttccc ctccgcccga acgtagtgta 1140 ccacgtcctt caaagcccgc tcgccgccct gaagctttac ctgaagcaac attggcgacg 1200 actcgccgcc accgccgctc ctatcctctc ctccctaacc ctccttcagc acttcctccc 1260 actgtctttg cctcttcccg aggtaaaatc catctgtctc ttccacaaag aagtgtaccg 1320 aaagagagag ttactcccct ccttccaccc cttccaagtt tgcccccctc tcagaacctt 1380 cttccaggag acactacgag tcaagcccaa ctgccgaccc gggtctcccc aacacttcct 1440 tcttcagcga gttctcaact cactccgacc tctggcccca cttttggcca tgacccccct 1500 ttactcccgc aaaccgaaac cccttctgcc ccacgccgaa ctttcctgga ccctgaaaag 1560 cttcgcgctg ccctggcaag catccctagc gctcctggcg atctcggaac tctcgatact 1620 cgttcacaaa atgacgtccc ctccagccct ccaagctcaa cacgacatct accatcggca 1680 catgcaccct ggatcttacg tactccaatg ggagaggaca cccttgagac tctctcgatc 1740 gacagctttt cttcctttca ctcctacgat ctctacagcc cctctggcat catcccaagc 1800 catcaccgcc ccccttttct cgaacatgaa cgctcgccct ctccccccct ccactcaccc 1860 ctctcgtccc cctgctccta cgactacgga agtgctccag acacagactg agtcaccccc 1920 aaatcactct ctccccgacc agcccttcac gaccccgccg tccctttccc cgacagccca 1980 cccgcccacc tcgccccacc ctcccccacc ccatccctct tccgacgacg ctcccttgcg 2040 acccgatcca ctcgccatgt ttcccgaact aatcccagcc tccaacccat cctccagccg 2100 acccgccgtc cctccaggca cacaccccgc tcctccaaca gccccaacca ccgccgcgcg 2160 atccatcccc cccgcactcc tccccccgcc cctcccttcc gaccacaccg ccgtcggccc 2220 cgtcttacct tttcaccagc tccatcctcg caactacccc ccaaacaccg ctgattacca 2280 cacccgactt cgcgtgctac ccccatcccc cttgccgcac ccaatcttga actgcctcct 2340 caccgcggtc tcactccaaa ccaatgtgtc cgaggagcac ctctggcatt ctctccagac 2400 cattctcccc gactcacagc tcgacaacga cgaagtccgc acctttggct tgtccacgga 2460 ccacctgacc gccttggcac acctgtacaa ctttcaggcc agggtccact ctgatcacgg 2520 ccagcttctt ttcggccccc acgactccgc ccaaaggatc aacatcaccc acacagtcgg 2580 cccccatccc acttcacctc cggccctcga ctcatcggca gttccccgtc cgaaccctcc 2640 agaaccgtcc caccctctgg tccgcgccat gaaatctttc aaagtctccg accactacct 2700 cccatttctc gaagctcaca ggcacccaac atccatttct cacgcgaaaa acctcgtgtc 2760 caacatgaaa aacggcttcg acggagtcct ctccctcatc gatgtttcct ccaaccctcg 2820 tccaggacac actcctagag aaagaataat tgaactcgac cgccacctgg acaccaatcc 2880 tgagaaaacc gtgcctctgg tccacatagc cggtttcgcc ggttgcggca agacccaccc 2940 aatccagaaa ctcctacaat ccaaactctt caaggacttc cgagtctcat gtcccacgac 3000 tgagctccga aatgagtgga aatcctccat gagtctccca ggcaaccagt cctggcgttt 3060 ctgcacctgg gaatcctctc ttctcaagtc ttcaaagatc ctcgtgatag acgaaatcta 3120 caagatgccc cgcggctacc tcgacctctc aattctctcc gatcctgcag tcgagttagt 3180 catcattctc ggtgacccac tccaaggtga ataccactca ctatcaaaag attcatccaa 3240 ccaccggctc ccatccgaaa ccatccgcct cgtcgactac atcgacgcct actgctggtg 3300 gagttatcgc atccctcaag tgatcgcccg cctcttttcc atcactagct tcaattacga 3360 cacgggcatc attggatcca taccgacccc ggttgactgt catcccatcc tcaccaacag 3420 ccacgccgcc gccctcactt tcaacaacct tggttacaga gcttgcacaa tcagctccag 3480 ccaaggcatc accctctctg accccgctgt catcgtcctg gacaactaca ctcgctacct 3540 ctccgcctct aacggcctcg tggcgctcac acgttcccga acaggcgtcc agttcatggg 3600 tcccaccact tacatcggcg gcaccaacgg atcttctgcc atgttctctg acgccgtgaa 3660 ccgcaccccc ataaacctcg atcagtactt cccttcccta ttccatcgcc tccctctgat 3720 ccattctccg atacaatcac gcctgctccg cctcaccgga gccaccccaa gctcctcccc 3780 cactttccgc tcaaccaact tccacttacc gcctcacgtt cccctctctt actcctcgga 3840 cttcgtcgcg ctcaacccct ctctcgaccc gaaagtccta gattcccgtc tcgaaaccca 3900 cttcctcccc ccttcccgcc tccccctcca cttcgacctt gagagcccca gcctaccacc 3960 ccccgccccg tccaaacccg agcccaccct tccaaaagcc accgcttgtt atcctggcga 4020 aaacttcgag agccttgcag ccttcttcct cccagcccat gatcccgctc aacgcgagat 4080 cctataccgg gatcaaagca gcaaccagtt cccttggttc gacaggccgt tctctctttc 4140 ttgccaacct tccagcctca tctccgccaa gcattcgcct gcttctgacc ccaccctgct 4200 ccctgcctcc atcaacaagc gactccgatt ccgccccagt gaagcccccc atgccattac 4260 ttcggacgac gtaatcctcg gcctccaact ctttcattcc ctctgccgag cctacaaccg 4320 gcaaccttca cagtccatcc ctttcaatcc cgagcttttc gccgactgca tctccctgaa 4380 cgagtacgcg caactcagct ccaaaaccca agctaccata gtggccaatg cgtctcgttc 4440 cgacccagac tggcgacaca ccactgttaa gatcttcgcc aaagctcaac acaaggtcaa 4500 cgacggctca atcttcggcc cctggaaagc ctgtcaaact ctcgcactga tgcacgactt 4560 cgtcatcctt gttttgggcc ccgtcaagaa gtaccaacgc attttcgaca actccgaccg 4620 gcctgagcac atttactccc attgtggcaa aaccccgatc cagcttcgcg actggtgcca 4680 acagcacctc acctccttca ctcctaaagt agccaacgac tacaccgcct tcgaccaatc 4740 acagcatggg gaatctgtcg tcctcgaagc cctcaaaatg aagcgcctga acatcccagc 4800 ccacctgatc gaactccacg tccacctcaa aaccaacgtc tccacccagt tcggaccact 4860 cacctgcatg cgactcaccg gcgaacccgg cacttatgac gacaacaccg actacaacct 4920 tgctgtcatc ttctctcagt atgaggtcgg ttcatgcccg atcatggtat ccggtgacga 4980 ctccctcatc gacagagtac tccccacccg gtccgactgg cccgacgttc tcaagcgcct 5040 gcacctcaaa ttcaagctcg aacacaccac caacccactc ttctgcgggt attacgtcgg 5100 ccccgccggc tgtctccgca atcccctggc cctcttctgc aagctcatga tcgctgtgga 5160 cgacgacgct ctccccgacc gacgactcag ctacctcact gagttcacca ccggccaccg 5220 actcggagag cccctctgga gccttctgcc ctcagagctc gtcaagtatc aatcagcctg 5280 tttcgacttc ttctgccgcc actgccccaa gcacgagaaa atgcttctca gcgacgaacc 5340 acccaccgcc agtctcctag accgagtcac ttcttctccc cgatggctga ccaaaaacgc 5400 catgtacctt cttcccgcca agcttcgctt agccatttct tcgctctccc aagtccagtc 5460 cttcccagag tccccagaag tgtcccaggt tgagtctgaa ttgcttcact accttcaata 5520 gcaatcagac ccagccatgg acatcgacaa agaactggcc ccccaagaca agactctcac 5580 cgtctcttcc gttctccccc cctcccctgg ccctcgaccg cccgtcatca gacaagtctt 5640 ccagtccgag atccttttcg ccggcaccaa agacgctgac gcctccgtca ccattgccaa 5700 catcgacagc gttgccaatc tcacctcact ttatcgccac gcgtcccttg actccctctg 5760 ggtcaccatc caccctaccc tccaagcccc agcctttcca acgaccgtcg gaatctgctg 5820 ggtgcccgcc aactcaccta tcacctccac ccagatcacc aagacctttg gtggtcaaat 5880 cttctgcatt ggaggctcca tcaacaccct ccaaccactc atcatccatt gccccctcga 5940 aatgatgaat cgacgggtta aggattccat tcaatacctc gactccccga aactgatcat 6000 ttcggtcacc gcccaaccca ccgcccccgc cgcatcgacc tgcataataa ctgtatcagg 6060 cacgatctcg atgcactctc cgctcatcac ggacacctcc tcctaagttc tcgatcttta 6120 aaatcgtca 6129 //