ID JN997474; SV 2; linear; genomic RNA; STD; VRL; 3666 BP. XX AC JN997474; XX DT 11-APR-2012 (Rel. 112, Created) DT 29-MAR-2013 (Rel. 116, Last updated, Version 3) XX DE Xanthophyllomyces dendrorhous virus L2 capsid protein (CP) and DE RNA-dependent RNA polymerase (RdRp) genes, complete cds. XX KW . XX OS Xanthophyllomyces dendrorhous virus L2 OC Viruses; Riboviria; Totiviridae; Totivirus. XX RN [1] RC Publication Status: Online-Only RP 1-3666 RX PUBMED; 22838956. RA Baeza M., Bravo N., Sanhueza M., Flores O., Villarreal P., Cifuentes V.; RT "Molecular characterization of totiviruses in Xanthophyllomyces RT dendrorhous"; RL Virol J 9(1):140-140(2012). XX RN [2] RP 1-3666 RA Baeza M., Bravo N., Sanhueza M., Flores O., Villarreal P., Cifuentes V.; RT ; RL Submitted (04-NOV-2011) to the INSDC. RL Ciencias Ecologicas, Universidad de Chile, Las Palmeras 3425, Nunoa, RL Santiago, Metropolitana 123131231, Chile XX RN [3] RC Sequence update by submitter RP 1-3666 RA Baeza M., Bravo N., Sanhueza M., Flores O., Villarreal P., Cifuentes V.; RT ; RL Submitted (28-MAR-2013) to the INSDC. RL Ciencias Ecologicas, Universidad de Chile, Las Palmeras 3425, Nunoa, RL Santiago, Metropolitana 123131231, Chile XX DR MD5; 17568a0ce0c644cab5e688e074d14340. DR EuropePMC; PMC3561658; 22838956. XX CC On Mar 28, 2013 this sequence version replaced gi:383388875. XX FH Key Location/Qualifiers FH FT source 1..3666 FT /organism="Xanthophyllomyces dendrorhous virus L2" FT /host="Xanthophyllomyces dendrorhous" FT /mol_type="genomic RNA" FT /note="acronym: XdV-L2" FT /db_xref="taxon:1167692" FT gene 71..1114 FT /gene="CP" FT CDS 71..1114 FT /codon_start=1 FT /gene="CP" FT /product="capsid protein" FT /note="XdVL2gp1" FT /db_xref="InterPro:IPR036332" FT /db_xref="UniProtKB/TrEMBL:H9XW63" FT /protein_id="AFH09415.2" FT /translation="MEGEAMVTDMDAHDFVLDETKTPRKALFSGAMINYLAFMGLHAIL FT SNYASRHENWRSAFLHSHEELAILHDRTVRAALTSVITGKEMVTFMNPNLFVSYDVTPM FT VNVSKVSFEEVLERGYPSSLPVHGVVPMVSGSLFLSANASDVASQCHLEQGMKVTVDEY FT GTVSPEDALRVAQMYRMFGHELEIRSEKTEEIHELFAPVQECVIYPSALLYNTRDTDRL FT KLVSSLRRPGRSSTIPDVSALTAGQTITIDYTIPRIGMHYFNKRVLPIAPSMVLPQRKR FT EITFRVKGHTVLHKVKMNASNVTRPVKDFHGGEIQVAPLLPVLRNARVPIQVNQTSEED FT VTAEDVE" FT gene 1348..3633 FT /gene="RdRp" FT CDS 1348..3633 FT /codon_start=1 FT /gene="RdRp" FT /product="RNA-dependent RNA polymerase" FT /note="XdVL2gp2" FT /db_xref="GOA:H9XW64" FT /db_xref="InterPro:IPR001795" FT /db_xref="UniProtKB/TrEMBL:H9XW64" FT /protein_id="AFH09416.2" FT /translation="MDRESSNKFGIFEASKSVYGVTMSGLVIANGKAKFFFASIKQYLL FT TQSKAMLIAMTRHFSSLYESYAYDDPTSPVNLFRDRFPGRSENEAMTFKQMEELPKSKI FT SGAHHFHFTPMQVLKSIGRGRLERAIQASRLPKDAEMTFATGMLLWYTSISDQMAELIR FT GAGIFKCDSVREYVKEMKQLSVEAKSLQNLVTDDLRTVFELEVLVNRIDGVVDWEKEKE FT NRQSINVTNIKDSDVFRSACKIFEDAKGIGRRPKSFSWESYWANRWQWSAAGSIHSQYP FT RDMEYVIRDQQSLKNKFITISNMPKCTVDYFSDREPQVQGWSSTKYEWGKQRAIYGTDL FT TSYVLSNFAFYNCENVLPNQFPVGRDANDENVVNRVSGVLNNRMPFCLDFEDFNSQHSS FT GNMKAVIYAYIETFIDCLTPEQEQAAMWTAASLDKQIINDNVGTKTTYESKGTLLSGWR FT LTTFMNSVLNYIYTTKLAAEEKRPGDSLHNGDDVLIGVRSMALPQRCMQNAIKYNVRMQ FT SSKCAVGAIAEFLRIDHKQGGNGQYLSRAVATMVHSRIESRVSTDIRDLVQSMENRFAD FT AKGRGMANDIISGLREQYYMRQSVLCDTDVEDIYLIKNAHRVVGGISEEKDSKMGVLIT FT SQLRAQKNVSIPYLPGVNEYANEIHKALKINVSIKTICDRLYDATYEAVSIKDRKMKIL FT RENRDQWFVNVRRIYKAHKGSQLSQNYGKAALVGFALEVLGREMPDATITTILNTSQRP FT LDLIKHIL" XX SQ Sequence 3666 BP; 1203 A; 742 C; 901 G; 820 T; 0 other; gtgggacaaa gcgataacgc aagtcgtgat tgcaaaattt gctccgtgta gagctaaaat 60 accttctaac ctggaaggtg aggctatggt gacagacatg gatgcgcacg atttcgtact 120 ggacgagact aaaactccca ggaaagcact gttttctgga gccatgatta actatctagc 180 ttttatgggc ctacatgcga tactttcaaa ttacgcttct aggcacgaaa attggagatc 240 agccttttta cacagccacg aagaacttgc tatacttcac gataggaccg taagggctgc 300 attaaccagt gtcataactg gcaaagaaat ggttactttc atgaacccaa atctctttgt 360 atcttatgat gttactccga tggtcaacgt aagtaaagta agcttcgaag aagtgttaga 420 gaggggatac ccgtcatctt tgcccgtaca cggcgtggtg ccaatggtgt caggatccct 480 cttcttgtcc gctaacgcat cagacgttgc ctcacagtgt caccttgaac agggcatgaa 540 ggtcacggta gatgaatatg gcactgtgag cccagaagat gcgcttaggg tggctcaaat 600 gtatagaatg tttggtcacg aacttgaaat aagatcggaa aagactgagg aaatacatga 660 actgttcgct ccggtgcaag agtgcgtcat ttacccttcg gcactacttt acaacacgag 720 ggacacagat agattaaagc tagtgtcgtc actgcggaga cctggccgca gtagcactat 780 accagacgtt tcggctctga ccgctggaca aacaatcacc atcgattaca cgatacctag 840 gataggcatg cactacttca acaaaagggt gctccccata gctccgtcaa tggtattacc 900 tcaaaggaaa agggaaataa cgttcagggt caaaggccat acagttctcc ataaggtcaa 960 aatgaacgct tcaaacgtga caagacctgt gaaggatttt cacggaggcg aaatacaggt 1020 ggcacctttg ttgccagttc taaggaatgc tcgtgtgcca atccaagtca atcagacttc 1080 ggaggaggac gtaactgccg aagatgtaga gtagagaact ataaaaactc caaatacacg 1140 ggaactgaca catcggacta tctatcgcaa tacggacaac tatataacag gaattcattc 1200 atagggctta acgtgcagcc atgtgaaggt gaggaaagca cgggcaacag atgggagttt 1260 gccgacagac aaattccctt aacgatatct ctaacaagcc ggggaaacat tgaagcagta 1320 ccgttttcag aagctcagta tgccttcctg gaccgggaaa gctcaaataa attcggcata 1380 ttcgaggcaa gtaaaagcgt gtatggggta acaatgtctg ggttggtgat agctaatggt 1440 aaggctaaat ttttcttcgc ctcaatcaag caatatttgc taacccaatc taaagcaatg 1500 ttaatagcca tgaccagaca cttctctagc ctgtacgaga gctacgctta tgatgatcct 1560 acgtcaccgg taaacctatt cagagacaga ttccccggta gaagcgaaaa tgaagcgatg 1620 acattcaagc aaatggagga gctgccgaag tctaaaattt caggagcgca ccattttcac 1680 ttcacaccta tgcaagtgct gaaatcgata gggagaggga gactggaaag ggcgatccag 1740 gcatcacggc taccaaagga cgccgaaatg acgtttgcca cagggatgct actgtggtac 1800 acatctatta gtgatcagat ggcagaacta atcagaggcg cgggaatatt caagtgtgat 1860 agtgtgaggg aatacgtaaa agaaatgaaa cagctatcag tggaggcgaa gtcgctgcaa 1920 aacctcgtga ccgatgacct aagaacagta ttcgagttag aggtgctcgt aaatagaatc 1980 gacggtgtag tagactggga gaaagagaag gaaaacagac agtcaataaa cgtgacaaac 2040 ataaaggatt cagatgtgtt tagatctgcg tgtaagatat ttgaagacgc caaaggtata 2100 ggccggcgcc cgaagagctt cagttgggag agctattggg ctaacaggtg gcaatggagt 2160 gctgcgggca gcatacactc acaatatccc agagacatgg agtacgtaat tagggaccaa 2220 cagtcactta aaaacaagtt tataactata tccaatatgc ccaaatgtac agtagactac 2280 ttttcggaca gggagccgca ggtgcaaggt tggtcgtcaa cgaagtatga atggggcaag 2340 caaagagcaa tatatgggac agatctgact agctacgtac tgtctaattt cgcgttttac 2400 aattgtgaga acgtactacc aaatcaattt ccagtcggac gagatgccaa tgacgaaaac 2460 gtggtgaaca gagtttcggg agtgctaaat aacagaatgc cattctgtct tgactttgag 2520 gacttcaata gtcaacacag ctcgggcaac atgaaggctg taatatacgc ttatatcgag 2580 actttcatag attgtcttac tccggaacaa gagcaagcgg caatgtggac cgcagcgtca 2640 ttagacaaac agataatcaa tgacaacgtt ggaaccaaga ctacgtatga atctaaagga 2700 acgctacttt cggggtggag gctgacgact ttcatgaaca gtgtgttgaa ctatatttat 2760 acaacgaaat tagcagcaga agaaaagcgt ccgggtgata gcttgcacaa cggagacgat 2820 gtcttaatag gagtgaggtc aatggctctg ccgcagaggt gtatgcaaaa cgccattaaa 2880 tataacgtgc gaatgcaaag cagcaaatgc gccgtgggtg caattgcaga attcctgcgg 2940 atagaccaca aacagggagg caacggccag tacctatcca gagcagtggc cacaatggta 3000 cattcgagaa ttgaaagtag agtctcgact gacataagag acttagtaca atcaatggaa 3060 aacagattcg ctgacgcaaa aggcagaggg atggcgaatg acatcatatc cggattgcgg 3120 gaacagtact acatgaggca gagtgtgctg tgtgacaccg acgtagagga catatacttg 3180 ataaagaatg cgcacagagt tgtaggagga ataagcgaag aaaaagactc gaaaatgggt 3240 gttttgataa catcccaact tagagcgcag aagaacgtgt caataccgta cttgccggga 3300 gtaaatgaat atgcaaacga aatacacaaa gcattaaaaa taaatgtgtc aattaagact 3360 atatgtgaca gattatacga cgctacatac gaagctgtct caatcaaaga tcgcaagatg 3420 aaaatcttac gggaaaacag agatcagtgg ttcgttaacg tacgcagaat atacaaagca 3480 cataagggta gtcaattgtc acagaattac ggtaaagcag ccttagtagg attcgcattg 3540 gaagtgttgg gcagagaaat gcctgatgca accataacaa caatactgaa tacttcacaa 3600 aggccactag acctaattaa gcacatatta taaatgtgca caaaagacca gcagggtcca 3660 taacaa 3666 //