ID   JN989446; SV 1; circular; genomic DNA; STD; VRL; 2574 BP.
XX
AC   JN989446;
XX
DT   20-MAR-2012 (Rel. 112, Created)
DT   04-DEC-2012 (Rel. 115, Last updated, Version 4)
XX
DE   Tobacco yellow dwarf virus-A isolate TYDV-A_AU_3492M_2002, complete genome.
XX
KW   .
XX
OS   Tobacco yellow dwarf virus-A
OC   Viruses; Geminiviridae; Mastrevirus.
XX
RN   [1]
RP   1-2574
RX   PUBMED; 22406325.
RA   Hadfield J., Thomas J.E., Schwinghamer M.W., Kraberger S., Stainton D.,
RA   Dayaram A., Parry J.N., Pande D., Martin D.P., Varsani A.;
RT   "Molecular characterisation of dicot-infecting mastreviruses from
RT   Australia";
RL   Virus Res. 166(1-2):13-22(2012).
XX
RN   [2]
RP   1-2574
RA   Hadfield J., Thomas J.E., Schwinghamer M.W., Parry J.N., Kraberger S.,
RA   Stainton D., Dayaram A., Pande D., Martin D.P., Varsani A.;
RT   ;
RL   Submitted (03-NOV-2011) to the INSDC.
RL   School of Biological Sciences, University of Canterbury, Private Bag 4800,
RL   Christchurch 8140, New Zealand
XX
DR   MD5; a6c7fd9f120ff714a81da5799bbac21c.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2574
FT                   /organism="Tobacco yellow dwarf virus-A"
FT                   /host="Cicer arietinum (chickpea)"
FT                   /isolate="TYDV-A_AU_3492M_2002"
FT                   /mol_type="genomic DNA"
FT                   /country="Australia"
FT                   /lat_lon="32.11 S 148.07 E"
FT                   /collection_date="2002"
FT                   /db_xref="taxon:1162558"
FT   CDS             1..309
FT                   /codon_start=1
FT                   /product="movement protein"
FT                   /db_xref="GOA:H9BAL2"
FT                   /db_xref="InterPro:IPR002621"
FT                   /db_xref="UniProtKB/TrEMBL:H9BAL2"
FT                   /protein_id="AFD63093.1"
FT                   /translation="MFPAKYQVFPSDINYSYTPGGTFEQYQPQKAGESSEHFFSKVVVA
FT                   LIVILFAVGIVYLAYTLFLKDLILLLKAKKQKTTTEIGFGNTPLRRPSEGTPNGGPV"
FT   CDS             293..1057
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /db_xref="GOA:H9BAL3"
FT                   /db_xref="InterPro:IPR000143"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="UniProtKB/TrEMBL:H9BAL3"
FT                   /protein_id="AFD63092.1"
FT                   /translation="MAGRYKGLVYSRKRGRYGKTYQALGVKSQRELEQLVNQPGRPVSN
FT                   RRPALQVAEFLWTTNKAGVTFSPGGSTFLITNYPQGANENCRHTNRTITYKMAVKTWVA
FT                   LDGSMVSRVAKFPIYFWLVYDKNPGDSNPSPSAIFDTVYQDQPGTWTVTRNVCHRFVVK
FT                   KTWSCMLESNGVDPNAKQGSSYYGPGPVYQWRHVTKFFKRLGVSTEWKNSSTGDVADIK
FT                   EGALYLVCAPGGGATVRVGGRFRMYFKSVGNQ"
FT   CDS             complement(join(1213..1620,1707..2306))
FT                   /codon_start=1
FT                   /product="replication associated protein"
FT                   /db_xref="GOA:H9BAL4"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR001301"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="UniProtKB/TrEMBL:H9BAL4"
FT                   /protein_id="AFD63094.1"
FT                   /translation="MPSTPQKNKSFRLQTKYVFLTYPRCSSSAENLRDFLWDKLSRFAI
FT                   FFIAIATELHQDGTPHLHCLIQLDKRSNIRDPSFFDLGGNHPNIQPAKNSEQVLEYISK
FT                   DGNVITKGEFKKHRVSPSKSDERWRTIIQTATSKEEYLDMIKDEFPHEWATKLQWLEYS
FT                   ANKLFPPQPEIYHSPFRSEDLRCHEDLANWRDEHLYHDKGGTRTRHPSLYICGPTGKTT
FT                   WARSLGRHNYWNGTIDFTVYDDHATYNVIDDIPFKFVPLWKQLIGCQYDFTVNPKYGKK
FT                   KKIKGGVPCIILCNDDEDWLKNMSPAQIEYFEANCITHFMYAAETFFAPESSSH"
FT   CDS             complement(1425..2306)
FT                   /codon_start=1
FT                   /product="RepA protein"
FT                   /db_xref="GOA:H9BAL5"
FT                   /db_xref="InterPro:IPR001146"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="UniProtKB/TrEMBL:H9BAL5"
FT                   /protein_id="AFD63091.1"
FT                   /translation="MPSTPQKNKSFRLQTKYVFLTYPRCSSSAENLRDFLWDKLSRFAI
FT                   FFIAIATELHQDGTPHLHCLIQLDKRSNIRDPSFFDLGGNHPNIQPAKNSEQVLEYISK
FT                   DGNVITKGEFKKHRVSPSKSDERWRTIIQTATSKEEYLDMIKDEFPHEWATKLQWLEYS
FT                   ANKLFPPQPEIYHSPFRSEDLRCHEDLANWRDEHLYHVSIDAYTYIHPVPYDQALSDLE
FT                   WMADLTRTREGLEPDTPRSTSADLPVRQLGPEASEDTITGMGPSTSLSMMTTRPTTSST
FT                   TSPSNSSHYGSN"
XX
SQ   Sequence 2574 BP; 689 A; 481 C; 624 G; 780 T; 0 other;
     atgtttcccg ccaaatatca agtgttccca tctgatataa attactcata tacccctggt        60
     ggtacttttg agcaatatca gccgcagaaa gcgggtgagt catcggagca cttcttttcg       120
     aaagttgttg ttgctttgat tgttatcctt tttgctgtag gtatcgtata cttagcgtat       180
     acgttattct tgaaggattt aatccttctt ttgaaagcaa agaagcagaa gacgacaact       240
     gagatagggt ttggtaatac ccctctcaga agacctagtg aaggaacccc taatggcggg       300
     ccggtataag ggtttggtct attcccggaa aaggggacgt tatggcaaga cgtatcaagc       360
     tcttggcgtg aaatcccaaa gggagttgga gcagttagtt aatcaaccag ggcgtcctgt       420
     ttctaacagg cgtcctgctc tacaggtcgc agagtttctg tggacgacga ataaagcagg       480
     agtgacgttt tctcctgggg ggtctacttt cctcatcact aattaccctc aaggtgcgaa       540
     cgagaactgt agacacacca acagaacaat aacctataag atggctgtga agacgtgggt       600
     tgctttggat ggctcgatgg tctctagggt tgcaaagttc ccaatctatt tctggttggt       660
     gtatgataaa aaccctggcg atagtaatcc atcgccttcc gctatttttg atactgtata       720
     tcaagatcag cctgggactt ggactgtgac tcgtaatgta tgtcacaggt ttgtcgttaa       780
     aaaaacctgg tcatgtatgt tggagtctaa tggagttgac cctaatgcta aacaagggtc       840
     ttcttactat ggtcctgggc ctgtgtatca gtggaggcat gttactaagt tttttaaacg       900
     tttaggggtt agcacagagt ggaagaattc ttccacaggt gatgttgctg atattaagga       960
     aggagcacta taccttgtat gtgctcctgg tggtggtgct actgtaagag ttggcggtag      1020
     attccgcatg tatttcaaat cagttggcaa tcaataaaaa tgttgttatt ttgatttcat      1080
     attaatgagc ttcagtgtag agaaattcaa atcttattaa taaaaacccg gaatacaaaa      1140
     acacacgaaa acgaaataaa gacaccttac aatcattaca ctatatatac cctcctatga      1200
     ggagaggcac gttcagtgac tcgacgattc aggagcaaaa aatgtttccg ccgcatacat      1260
     aaaatgtgta atacaattgg cttcaaagta ttcaatctga gcgggagaca tattcttcag      1320
     ccagtcttca tcgtcgttac atagtataat acatggcact cctcctttta ttttcttctt      1380
     ttttccatac ttagggttga cagtgaaatc atactggcaa cctattaatt gcttccataa      1440
     tgggacgaat ttgaagggga tgtcgtcgat gacgttgtag gtcgcgtggt catcatagac      1500
     agtgaagtcg atggtcccat tccagtaatt gtgtcttccg aggcttctgg cccaagttgt      1560
     cttaccggta ggtccgcaga tgtagagcga ggggtgtctg gttctagtcc ctcccttgtc      1620
     ctggttaagt cagccatcca ttcaaggtca gataaggctt gatcgtatgg gacggggtga      1680
     atataagtgt aggcgtctat acttacatgg tatagatgtt cgtctctcca gttcgcaaga      1740
     tcttcgtggc atcgaagatc ttcagatctg aaaggggaat ggtagatttc aggttgtggt      1800
     gggaatagtt tattggcaga gtattccaac cactgtaatt ttgttgccca ttcatgagga      1860
     aattcatcct taatcatgtc cagatattcc tctttagaag tcgcagtctg gataatagtt      1920
     cgccatcgct catcagattt tgaaggggag actctgtgtt tcttgaactc tcctttggtg      1980
     atgacgtttc cgtctttgga gatgtattca agaacttgtt cagagttttt agctggttgg      2040
     atatttggat ggtttcctcc aagatcaaaa aaagaagggt cacgtatatt gcttcttttg      2100
     tcaagctgaa taaggcagtg aagatgggga gtaccatctt ggtggagttc agtagcaata      2160
     gcgataaaga aaatagcaaa acgtgacagt ttatcccaga ggaaatctct gagattttct      2220
     gcagaagagc tgcagcgtgg ataagtaagg aatacatatt tggtttggag cctgaaggat      2280
     ttgtttttct ggggggttga aggcatatta aggctcaagt tccgtacgat gaaactctat      2340
     tcttaactag tgagtgagcc agtgagccag gattatatgg tatttatatt tgaaggtgga      2400
     ccgttaggat cttgacacgt ggggcgcact cacggatttt aatattaccc gtgagtgctc      2460
     tcttggcccc acgcgagccc ttttgggcga gcgaaagtgc gacgtccttt cctttagtgg      2520
     ttcatgagtc attaaagtga tatataaaga tgacctgaca tcacaaagtt gaaa            2574
//