ID   JN989445; SV 1; circular; genomic DNA; STD; VRL; 2580 BP.
XX
AC   JN989445;
XX
DT   20-MAR-2012 (Rel. 112, Created)
DT   17-MAY-2012 (Rel. 112, Last updated, Version 2)
XX
DE   Tobacco yellow dwarf virus-A isolate TYDV-A_AU_48_1985, complete genome.
XX
KW   .
XX
OS   Tobacco yellow dwarf virus-A
OC   Viruses; Geminiviridae; Mastrevirus.
XX
RN   [1]
RP   1-2580
RX   PUBMED; 22406325.
RA   Hadfield J., Thomas J.E., Schwinghamer M.W., Kraberger S., Stainton D.,
RA   Dayaram A., Parry J.N., Pande D., Martin D.P., Varsani A.;
RT   "Molecular characterisation of dicot-infecting mastreviruses from
RT   Australia";
RL   Virus Res. 166(1-2):13-22(2012).
XX
RN   [2]
RP   1-2580
RA   Hadfield J., Thomas J.E., Schwinghamer M.W., Parry J.N., Kraberger S.,
RA   Stainton D., Dayaram A., Pande D., Martin D.P., Varsani A.;
RT   ;
RL   Submitted (03-NOV-2011) to the INSDC.
RL   School of Biological Sciences, University of Canterbury, Private Bag 4800,
RL   Christchurch 8140, New Zealand
XX
DR   MD5; 29c02bb0935920af3f8bbfde31da875c.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2580
FT                   /organism="Tobacco yellow dwarf virus-A"
FT                   /host="tobacco"
FT                   /isolate="TYDV-A_AU_48_1985"
FT                   /mol_type="genomic DNA"
FT                   /country="Australia"
FT                   /lat_lon="36.55 S 146.72 E"
FT                   /collection_date="1985"
FT                   /db_xref="taxon:1162558"
FT   CDS             1..309
FT                   /codon_start=1
FT                   /product="movement protein"
FT                   /db_xref="GOA:H9BAK8"
FT                   /db_xref="InterPro:IPR002621"
FT                   /db_xref="UniProtKB/TrEMBL:H9BAK8"
FT                   /protein_id="AFD63089.1"
FT                   /translation="MFPAKYQVFPSGINYSDTPVGTFEQYQPQKAGESSEHFFSKVVVA
FT                   LIVILFAVGIVYLAYTLFLKDLILLLKAKKQKTTTEIGFGNTPLRRPGEGNPNGGPV"
FT   CDS             293..1057
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /db_xref="GOA:H9BAK9"
FT                   /db_xref="InterPro:IPR000143"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="UniProtKB/TrEMBL:H9BAK9"
FT                   /protein_id="AFD63088.1"
FT                   /translation="MAGRYKGLVYSRKKGRYGKTYQALGVKSQRELEQLVNQPGRPVSN
FT                   RRPALQVAEYLWTTNKAGVTFSPGGSTFLITNYPQGANENCRHTNRTITYKMAVKTWVA
FT                   LDASMVSRVAKFPIYFWLVYDKNPGDSNPSPSAIFDSLYQDQPGTWTVTRNVCHRFVVK
FT                   KTWSCMLESNGVDPNAKQGSSYYGPGPCYQWRHVTKFFKRLGVSTEWKNSSTGDVADIK
FT                   EGALYLVCAPGGGATVRVGGRFRMYFKSVGNQ"
FT   CDS             complement(join(1213..1626,1713..2312))
FT                   /codon_start=1
FT                   /product="replication associated protein"
FT                   /db_xref="GOA:H9BAL0"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR001301"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="InterPro:IPR027417"
FT                   /db_xref="UniProtKB/TrEMBL:H9BAL0"
FT                   /protein_id="AFD63090.1"
FT                   /translation="MPSAPQKTKSFRLQTKYVFLTYPRCSSSAENLRDFLWDKLSRFAI
FT                   FFIAIATELHQDGTPHLHCLIQLDKRSNIRDPSFFDLEGNHPNIQPAKNSEQVLEYISK
FT                   DGNVITKGEFKKHRVSPSKSDERWRTIIQTATSKEEYLDMIRDEFPHEWATKLQWLEYS
FT                   ANKLFPPQPEIYQAPFTEEDLQCHEDLQLWRDQHLYHEPRRPGTRIPSLYICGPSRTGK
FT                   TTWARSLGRHNYWNGTIDFTVYDDHATYNVIDDIPFKFVPLWKQLIGCQSDFTVNPKYG
FT                   KKKKIKGGVPCIILCNDDEDWLKNMSPAQIEYFEANCITHFMCAAETFFAPESSSH"
FT   CDS             complement(1425..2312)
FT                   /codon_start=1
FT                   /product="RepA protein"
FT                   /db_xref="GOA:H9BAL1"
FT                   /db_xref="InterPro:IPR001146"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="UniProtKB/TrEMBL:H9BAL1"
FT                   /protein_id="AFD63087.1"
FT                   /translation="MPSAPQKTKSFRLQTKYVFLTYPRCSSSAENLRDFLWDKLSRFAI
FT                   FFIAIATELHQDGTPHLHCLIQLDKRSNIRDPSFFDLEGNHPNIQPAKNSEQVLEYISK
FT                   DGNVITKGEFKKHRVSPSKSDERWRTIIQTATSKEEYLDMIRDEFPHEWATKLQWLEYS
FT                   ANKLFPPQPEIYQAPFTEEDLQCHEDLQLWRDQHLYHVSVDAYRLIHNVTLVEAHSDLV
FT                   WMDDISRNLEGLEPGSPPSTSADQVVPERQHGPEASEDTITGMGPSTSLSMMTTRPTTS
FT                   STTSPSNSSHSGSN"
XX
SQ   Sequence 2580 BP; 691 A; 494 C; 624 G; 771 T; 0 other;
     atgtttcccg ccaaatacca agtgttccca tctggtataa attactcaga tacccctgtt        60
     ggtacttttg agcaatatca gccgcagaaa gcgggtgagt catcggagca cttcttttcg       120
     aaagttgttg ttgctttgat tgttatcctt tttgctgtag gtatcgtata cttagcgtat       180
     acgttattct tgaaggattt gatccttctt ttgaaagcaa agaagcagaa gacgacaact       240
     gagatagggt ttggtaatac ccctctcaga agacctggtg aaggaaaccc taatggcggg       300
     ccggtataag ggtttggtct attcccggaa aaagggacgt tatggcaaga cgtatcaagc       360
     tcttggagtg aaatcccaaa gggagttgga gcagttagtt aaccaaccag ggcgtcctgt       420
     ttctaacagg cgtcctgctc tacaggtcgc agagtatctg tggacgacga ataaagcagg       480
     agtgacgttt tctcctgggg gttctacttt cctcatcact aattaccctc aaggggcgaa       540
     cgagaactgt aggcacacca accggacaat aacctacaag atggctgtga agacgtgggt       600
     tgctttggat gcctcgatgg tctctagggt tgcaaagttc ccaatctatt tctggttggt       660
     gtatgataaa aaccctggcg atagtaatcc atcgccttcc gctatttttg atagtctata       720
     tcaagatcag cctgggactt ggactgtgac tcgtaatgta tgtcacaggt ttgtcgttaa       780
     aaaaacctgg tcatgtatgt tggagtctaa tggagttgac cctaatgcta aacaagggtc       840
     ttcttactat ggtcctgggc cttgttatca gtggaggcat gttactaagt tttttaaacg       900
     tttaggggtt agcacagagt ggaagaattc ttccacaggt gatgttgctg atattaagga       960
     aggagcacta taccttgtat gtgctcctgg tggtggtgct actgtaagag ttggcggtag      1020
     attccgcatg tatttcaaat cagttggcaa tcaataaaaa tgttgttatt ttgatttcat      1080
     attaatgagc ttcagtgtag agaaattcaa atcttattaa tacaaacccg gaatacaaaa      1140
     acacacgaaa acgaaaaaaa gacaccttac aaacaataca cactatatac cctcctatga      1200
     ggagaggcac gttcagtgac tcgacgattc aggagcaaaa aatgtttccg ccgcacacat      1260
     aaaatgcgta atacaattgg cttcaaagta ttcaatctgt gcaggagaca tattcttaag      1320
     ccagtcttca tcgtcgttac atagtataat acatggcact cctcccttta ttttcttctt      1380
     ttttccatac ttagggttga cagtaaaatc agactggcaa cctattaatt gcttccagag      1440
     tgggacgaat ttgaagggga tgtcgtcgat gacgttgtag gtcgcgtggt catcatagac      1500
     agtgaagtcg atggtcccat tccagtaatt gtgtcttccg aggcttctgg cccatgttgt      1560
     ctttccggta cgacttggtc cgcagatgta gagggagggg atcctggttc caggccttct      1620
     aggttcctgg atatgtcgtc catccaaact aagtcagagt gagcttcaac gagtgtgacg      1680
     ttatgaatta gacggtaagc atcaacactt acgtggtata gatgctggtc tctccataac      1740
     tgcagatctt catgacattg gagatcttcc tcagtgaatg gggcctggta gatttcaggt      1800
     tgtggtggaa atagtttatt tgcagagtat tccaaccact gtaattttgt tgcccattca      1860
     tgaggaaatt catcccttat catgtccaga tattcctctt tagaagtcgc agtctggata      1920
     atagttctcc atcgctcatc agattttgaa ggggagactc tgtgtttctt gaactctcct      1980
     ttggtgatga cgtttccgtc tttggagatg tattcaagaa cttgttcaga gtttttagct      2040
     ggttggatat ttggatggtt tccttcaaga tcaaaaaaag aagggtcacg tatattgctt      2100
     cttttgtcaa gctgaataag gcagtgaaga tggggagtac catcctggtg gagttcagtg      2160
     gcaatagcaa taaagaaaat agcaaaacgt gaaagtttat cccagaggaa atctctgaga      2220
     ttttctgcag aagagctaca gcgtggataa gtaaggaata catatttggt ttggagtctg      2280
     aaggatttgg ttttctgggg ggctgaaggc atattaaggc tctagtaccg tacgatgaaa      2340
     ctctattctt aactagtgag tgagccagtg agccaggttt atgtggcatt tatattggta      2400
     ggtggaccgt taggatcttg acacgtgggg cgcactcacg gattttaata ttacccgtga      2460
     gtgctctctt ggccccacgc gaggccttta ggccgagcaa aagtgcgccg tagtttcctt      2520
     tagtggttca tgagtcatta aagtgctata taaagttgac ctgacatcac aaagttgaaa      2580
//