ID   JN989444; SV 1; circular; genomic DNA; STD; VRL; 2582 BP.
XX
AC   JN989444;
XX
DT   20-MAR-2012 (Rel. 112, Created)
DT   17-MAY-2012 (Rel. 112, Last updated, Version 2)
XX
DE   Tobacco yellow dwarf virus-A isolate TYDV-A_AU_3492M_2002, complete genome.
XX
KW   .
XX
OS   Tobacco yellow dwarf virus-A
OC   Viruses; Geminiviridae; Mastrevirus.
XX
RN   [1]
RP   1-2582
RX   PUBMED; 22406325.
RA   Hadfield J., Thomas J.E., Schwinghamer M.W., Kraberger S., Stainton D.,
RA   Dayaram A., Parry J.N., Pande D., Martin D.P., Varsani A.;
RT   "Molecular characterisation of dicot-infecting mastreviruses from
RT   Australia";
RL   Virus Res. 166(1-2):13-22(2012).
XX
RN   [2]
RP   1-2582
RA   Hadfield J., Thomas J.E., Schwinghamer M.W., Parry J.N., Kraberger S.,
RA   Stainton D., Dayaram A., Pande D., Martin D.P., Varsani A.;
RT   ;
RL   Submitted (03-NOV-2011) to the INSDC.
RL   School of Biological Sciences, University of Canterbury, Private Bag 4800,
RL   Christchurch 8140, New Zealand
XX
DR   MD5; 4a6f2681a0abbddd2476d2f072290098.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2582
FT                   /organism="Tobacco yellow dwarf virus-A"
FT                   /host="Cicer arietinum (chickpea)"
FT                   /isolate="TYDV-A_AU_3492M_2002"
FT                   /mol_type="genomic DNA"
FT                   /country="Australia"
FT                   /lat_lon="32.11 S 148.07 E"
FT                   /collection_date="2002"
FT                   /db_xref="taxon:1162558"
FT   CDS             1..309
FT                   /codon_start=1
FT                   /product="movement protein"
FT                   /db_xref="GOA:H9BAJ6"
FT                   /db_xref="InterPro:IPR002621"
FT                   /db_xref="UniProtKB/TrEMBL:H9BAJ6"
FT                   /protein_id="AFD63085.1"
FT                   /translation="MYPAKYQVFPSGINYSDTPVGTFEQYQPQKAGESSEHFFSKVVVA
FT                   LIVILFAVGIVYLAYTLFLKDLILLLKAKKQKTTTEIGFGNTPLRRPGEGNPNGGPV"
FT   CDS             293..1057
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /db_xref="GOA:H9BAK5"
FT                   /db_xref="InterPro:IPR000143"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="UniProtKB/TrEMBL:H9BAK5"
FT                   /protein_id="AFD63084.1"
FT                   /translation="MAGRFKGLVYSRKKGRYGKTYQALGVKSQRELEQLVNQPGRPVSN
FT                   RRPALQVAEYLWTTNKAGVTFSPGGSTFLITNFPQGANENCRHTNRTITYKMAVKTWVA
FT                   LDGSMFSRVSKFPIYFWLVYDKNPGDSNPSPSAIFDSLYQDQPGTWTVTRNVCHRFVVK
FT                   KTWSCMLESNGVDPSAKQGSSYYGPGPCYQWRHVTKFFKRLGVSTEWKNSSTGDVADIK
FT                   EGALYLVCAPGGGATVRVGGRFRMYFKSVGNQ"
FT   CDS             complement(join(1213..1626,1713..2312))
FT                   /codon_start=1
FT                   /product="replication associated protein"
FT                   /db_xref="GOA:H9BAK6"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR001301"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="InterPro:IPR027417"
FT                   /db_xref="UniProtKB/TrEMBL:H9BAK6"
FT                   /protein_id="AFD63086.1"
FT                   /translation="MPSAPQKTKSFRLQTKYVFLTYPRCSSSAENLRDFLWDKLSRFAI
FT                   FFIAIATELHQDGTPHLHCLIQLDKRSNIRDPSFFDLEGNHPNIQPAKNSEQVLEYISK
FT                   DGNVITKGEFKKHRVSPSKSDERWRTIIQTATSKEEYLDMIKDEFPHEWATKLQWLEYS
FT                   ANKLFPPQPEIFQATFTEEDLQCHEDLRQWRDQHLYHEPRRPGTRIPSLYICGPRCTGK
FT                   TSWARSLGRHNYWNGTIDFTVYDDHATYNVIDDIPFKFVPLWKQLIGCQSDFTVNPKYG
FT                   KKKKIKGGVPCIILCNDDEDWLKNMSPAQIEYFEANCITHFMYAGETFIAPESSSH"
FT   CDS             complement(1425..2312)
FT                   /codon_start=1
FT                   /product="RepA protein"
FT                   /db_xref="GOA:H9BAK7"
FT                   /db_xref="InterPro:IPR001146"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="UniProtKB/TrEMBL:H9BAK7"
FT                   /protein_id="AFD63083.1"
FT                   /translation="MPSAPQKTKSFRLQTKYVFLTYPRCSSSAENLRDFLWDKLSRFAI
FT                   FFIAIATELHQDGTPHLHCLIQLDKRSNIRDPSFFDLEGNHPNIQPAKNSEQVLEYISK
FT                   DGNVITKGEFKKHRVSPSKSDERWRTIIQTATSKEEYLDMIKDEFPHEWATKLQWLEYS
FT                   ANKLFPPQPEIFQATFTEEDLQCHEDLRQWRDQHLYHVSVDAYRLIHNVTLIEATSDLV
FT                   WMDDVSRNLEGLEPGSPPSTSADQDVPVRHLGPEASEDTITGMGPSTSLSMMTTRPTTS
FT                   STTSPSNSSHSGSN"
XX
SQ   Sequence 2582 BP; 691 A; 493 C; 628 G; 770 T; 0 other;
     atgtatcccg ccaaatacca agtgttccca tctggtataa attactcaga tacccctgtt        60
     ggtacttttg agcaatatca gccgcagaaa gcgggtgagt catcggagca cttcttttcg       120
     aaagttgttg ttgctttgat tgttatcctt tttgctgtag gtatcgtata cttagcgtat       180
     acgttattct tgaaggattt gatccttctt ttgaaagcaa agaagcagaa gacgacaact       240
     gagatagggt ttggtaatac ccctctcaga agacctggtg aaggaaaccc taatggcggg       300
     ccggtttaag ggtttggtct attcccggaa aaagggacgt tatggcaaga cgtatcaagc       360
     tcttggcgtg aaatcccaaa gggagttgga gcagttagtt aatcaaccag ggcgtcctgt       420
     ttctaacagg cgtcctgctc tacaggtcgc agagtatctg tggacgacga ataaagcagg       480
     cgtgacgttt tctcctgggg ggtctacctt cctcatcact aatttccctc aaggggcgaa       540
     cgagaactgt aggcacacca accggacaat tacctacaag atggctgtga agacgtgggt       600
     tgctttggat ggctcgatgt tctctagggt ttcaaaattc ccaatctatt tctggttggt       660
     gtatgataaa aaccctggcg atagtaatcc atcgccttcc gctatttttg atagtctata       720
     tcaagatcag cctgggactt ggactgtaac tcgtaatgta tgtcataggt ttgtcgttaa       780
     aaaaacctgg tcatgtatgc tggagtctaa tggagttgac cctagtgcta aacaagggtc       840
     ttcttactat ggtcctgggc cttgttatca gtggaggcat gttactaagt tttttaaacg       900
     tttaggggtt agcacagagt ggaagaattc ttccacaggt gatgttgctg atattaagga       960
     aggagcacta taccttgtat gtgctcctgg tggtggtgct actgtaagag ttggcggtag      1020
     attccgcatg tatttcaaat cagttggcaa tcaataaaaa tgttgttatt ttgatttcat      1080
     attaatgagt ttcagtgtag agaaattcaa atcttattaa tacaaacccg gaatacaaaa      1140
     acacacgaaa acaaaaaaaa gacacctttc aatcattaca cactatatac cctcctatga      1200
     ggagaggcac gttcagtgac tcgacgattc aggagcaata aatgtttccc ccgcatacat      1260
     aaaatgcgta atacaattgg cttcaaagta ttcaatctga gcgggagaca tattcttaag      1320
     ccagtcttca tcgtcgttac atagtataat acatggcact ccacccttta ttttcttctt      1380
     ttttccatac ttagggttga cagtaaaatc agactggcaa cctattaatt gcttccagag      1440
     tgggacgaat ttgaagggga tgtcgtcgat gacgttgtag gtcgcgtggt catcatagac      1500
     agtgaagtcg atggtcccat tccagtaatt gtgtcttccg aggcttctgg cccaagatgt      1560
     cttaccggta catcttggtc cgcagatgta gagggagggg atcctggttc caggccttct      1620
     aggttcctgg atacgtcgtc catccaaact aagtcagagg tagcttcaat aagggtgacg      1680
     ttatgaatta gacggtaagc atctacactt acgtggtata gatgttggtc tctccattgt      1740
     cttagatctt catggcattg aagatcttcc tcagtgaaag tagcctggaa gatttcaggt      1800
     tgtggtggga ataacttatt tgcagagtat tccaaccatt gcagtttagt agcccattca      1860
     tgaggaaatt catcctttat catgtccaga tattcctctt tagaagtcgc agtctggata      1920
     atagttcgcc atcgctcatc agattttgag ggggagactc tgtgtttctt gaactctccc      1980
     ttggtgatga cgtttccgtc tttggagatg tattcaagaa cttgttcaga gttcttagct      2040
     ggttggatat ttggatggtt tccttcaaga tcaaaaaaag aagggtcacg tatattgctt      2100
     cttttgtcaa gctgaataag gcagtgaaga tggggagtac catcctggtg gagttcagta      2160
     gcaatagcga taaagaaaat agcaaaacgt gaaagtttat cccagaggaa atctctgaga      2220
     ttttctgcac tagagctgca gcgtggataa gtaaggaaga catatttggt ttggagacgg      2280
     aaggatttgg ttttctgggg ggctgaaggc atattaaggc tcaagtaccg tacgatgaaa      2340
     ctctattctt aactagtgag tgagccagtg agccaggatg atgtggtatt tatattggaa      2400
     ggtggaccgt taggatcttg acgcgttggg ggcgcactca cggattttaa tattacccgt      2460
     gagtgctctc ttggccccac gcgaggcctt taggccgagc gaaagtgcga cgtagtttcc      2520
     tttagtggtt catgagtcat taaagtgcta tataaagatg acttgacatc ccaaagttga      2580
     aa                                                                     2582
//