ID   JN989443; SV 1; circular; genomic DNA; STD; VRL; 2579 BP.
XX
AC   JN989443;
XX
DT   20-MAR-2012 (Rel. 112, Created)
DT   17-MAY-2012 (Rel. 112, Last updated, Version 2)
XX
DE   Tobacco yellow dwarf virus-A isolate TYDV-A_AU_2564_2010, complete genome.
XX
KW   .
XX
OS   Tobacco yellow dwarf virus-A
OC   Viruses; Geminiviridae; Mastrevirus.
XX
RN   [1]
RP   1-2579
RX   PUBMED; 22406325.
RA   Hadfield J., Thomas J.E., Schwinghamer M.W., Kraberger S., Stainton D.,
RA   Dayaram A., Parry J.N., Pande D., Martin D.P., Varsani A.;
RT   "Molecular characterisation of dicot-infecting mastreviruses from
RT   Australia";
RL   Virus Res. 166(1-2):13-22(2012).
XX
RN   [2]
RP   1-2579
RA   Hadfield J., Thomas J.E., Schwinghamer M.W., Parry J.N., Kraberger S.,
RA   Stainton D., Dayaram A., Pande D., Martin D.P., Varsani A.;
RT   ;
RL   Submitted (03-NOV-2011) to the INSDC.
RL   School of Biological Sciences, University of Canterbury, Private Bag 4800,
RL   Christchurch 8140, New Zealand
XX
DR   MD5; 736f843117fb0225a033e85b3bd606ad.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2579
FT                   /organism="Tobacco yellow dwarf virus-A"
FT                   /host="bean"
FT                   /isolate="TYDV-A_AU_2564_2010"
FT                   /mol_type="genomic DNA"
FT                   /country="Australia"
FT                   /lat_lon="34.6 S 146.41 E"
FT                   /collection_date="2010"
FT                   /db_xref="taxon:1162558"
FT   CDS             1..309
FT                   /codon_start=1
FT                   /product="movement protein"
FT                   /db_xref="GOA:H9BAK0"
FT                   /db_xref="InterPro:IPR002621"
FT                   /db_xref="UniProtKB/TrEMBL:H9BAK0"
FT                   /protein_id="AFD63081.1"
FT                   /translation="MYPAKYQVFPSGINYSDTPVGSFEQYQPQKAGESSEHFFSKVVVA
FT                   LIVILFAVGIVYLAYTLFLKDLILLLKAKKQKTTTEIGFGNTPLRRPGEGNPNGGPV"
FT   CDS             293..1057
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /db_xref="GOA:H9BAK1"
FT                   /db_xref="InterPro:IPR000143"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="UniProtKB/TrEMBL:H9BAK1"
FT                   /protein_id="AFD63080.1"
FT                   /translation="MAGRYKGLVYSRKKGRYGKTYQALGVKSQRELEQLVNQPGRPVSN
FT                   RRPALQVAEYLWTTNKAGVTFSPGGSTFLITNYPQGANENCRHTNRTITYKMAVKTWVA
FT                   LDGSMVSRVAKFPIYFWLVYDKNPGDSNPSPSAIFDSLYQDQPGTWTVTRNVCHRFVVK
FT                   KTWSCMLESNGVDPSAKQGSSYYGPGPCYQWRHVTKFFKRLGVSTEWKNSSTGDVADIK
FT                   EGALYLVCAPGGGATVRVGGRFRMYFKSVGNQ"
FT   CDS             complement(join(1212..1625,1712..2311))
FT                   /codon_start=1
FT                   /product="replication associated protein"
FT                   /db_xref="GOA:H9BAK2"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR001301"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="InterPro:IPR027417"
FT                   /db_xref="UniProtKB/TrEMBL:H9BAK2"
FT                   /protein_id="AFD63082.1"
FT                   /translation="MPSAPQKTKSFRLQTKYVFLTYPRCSSSAENLRDFLWDKLSSFAI
FT                   FFIAIATELHQDGTPHLHCLIQLDKRSNIRDPSFFDLEGNHPNIQPAKNSEQVLEYISK
FT                   DGNVITKGEFKKHRVSPSKSDERWRTIIQTATSKEEYLDMIKDEFPHEWATKLQWLEYS
FT                   ANKLFPPQPEIYQSTFTEEDLQCHEDLQLWRDQHLYHEPRRPRTRIPSLYICGPSRTGK
FT                   TTWARSLGRHNYWNGTIDFTVYDDHATYNVIDDIPFKFVPLWKQLIGCQSDFTVNPKYG
FT                   KKKKIKGGVPCIILCNDDEDWLKNMSPAQIEYFEANCITHFMYAGETFIAPESSSH"
FT   CDS             complement(1424..2311)
FT                   /codon_start=1
FT                   /product="RepA protein"
FT                   /db_xref="GOA:H9BAK3"
FT                   /db_xref="InterPro:IPR001146"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="UniProtKB/TrEMBL:H9BAK3"
FT                   /protein_id="AFD63079.1"
FT                   /translation="MPSAPQKTKSFRLQTKYVFLTYPRCSSSAENLRDFLWDKLSSFAI
FT                   FFIAIATELHQDGTPHLHCLIQLDKRSNIRDPSFFDLEGNHPNIQPAKNSEQVLEYISK
FT                   DGNVITKGEFKKHRVSPSKSDERWRTIIQTATSKEEYLDMIKDEFPHEWATKLQWLEYS
FT                   ANKLFPPQPEIYQSTFTEEDLQCHEDLQLWRDQHLYHVSVDAYRLIHNVTLVEATSDLV
FT                   WMDDISRNLEGLEPGSPPSTSADQVVPERQHGPEASEDTITGMGPSTSLSMMTMRPTTS
FT                   STTSPSNSSHSGSN"
XX
SQ   Sequence 2579 BP; 689 A; 489 C; 626 G; 775 T; 0 other;
     atgtatcccg ccaaatacca agtgttccca tctggtataa attactcaga tacccctgtt        60
     ggttcttttg agcaatatca gccgcagaaa gcgggtgagt catcggagca cttcttttcg       120
     aaagttgttg ttgctttgat tgttatcctt tttgctgtag gtatcgtata cttagcgtat       180
     acgttattct tgaaggattt gatccttctt ttgaaagcga agaagcagaa gacgacaact       240
     gagatagggt ttggtaatac ccctctcaga agacctggtg aaggaaaccc taatggcggg       300
     ccggtataag ggtttggtct attcccggaa aaagggacgt tatggcaaga cgtatcaagc       360
     tcttggcgtg aaatcccaaa gggagttgga gcagttagtt aatcaaccag ggcgtcctgt       420
     ttctaacagg cgtcctgctc tacaggtcgc agagtatctg tggacgacga ataaagcagg       480
     agtgacgttt tctcctggtg ggtctacttt cctgatcact aattaccctc aaggggcgaa       540
     cgagaactgt aggcacacca accggactat aacctacaag atggctgtga agacgtgggt       600
     tgctttggat ggctcgatgg tctctagggt tgcaaaattc ccaatctatt tctggttggt       660
     gtatgataaa aaccctgggg acagtaatcc atcgccttcc gctatttttg atagtctata       720
     tcaagatcag cctgggactt ggactgtgac tcgtaatgta tgtcataggt ttgtcgttaa       780
     aaaaacctgg tcatgtatgt tggagtctaa tggagttgac cctagtgcta aacaagggtc       840
     ttcttactat ggtcctgggc cttgttatca gtggaggcat gttactaagt tttttaaacg       900
     tttaggggtt agcacagagt ggaagaattc ttccaccggt gatgttgctg atattaagga       960
     aggagcacta taccttgtat gtgctcctgg tggtggtgct actgtaagag ttggcggtag      1020
     attccgcatg tatttcaaat cagttggcaa tcaataaaaa tgttgttatt ttgatttcat      1080
     attaatgagc ttcagtgtag agaaattcaa atcttattaa taaaaacccg gaatacaaaa      1140
     acacacaaaa acgaaaaaaa acacccttca atcattacac actatatacc ctcctatgag      1200
     gagaggcacg ttcagtgact cgacgattca ggagcaataa atgtttcccc cgcatacata      1260
     aaatgcgtaa tacaattggc ttcaaagtat tcaatctgag cgggagacat attcttaagc      1320
     cagtcttcat cgtcgttaca tagtataata catggcactc ctccctttat tttcttcttt      1380
     tttccatact tagggttgac agtaaaatca gactggcaac ctattaattg cttccagagt      1440
     gggacgaatt tgaaggggat gtcgtcgatg acgttgtagg tcgcatggtc atcatagaca      1500
     gtgaagtcga tggtcccatt ccagtaattg tgtcttccga ggcttctggc ccatgttgtc      1560
     tttccggtac gacttggtcc gcagatgtag agggagggga tcctggttct aggccttcta      1620
     ggttcctgga tatgtcgtcc atccaaacta agtcagaggt agcttcaaca agggtgacgt      1680
     tatgaattag acggtaagca tctacactta catggtatag atgctggtct ctccataact      1740
     gcagatcttc atggcattga agatcttcct cagtgaatgt ggactggtag atttcaggtt      1800
     gtggaggaaa tagtttattt gcggagtatt ccaaccactg taattttgtt gcccattcat      1860
     gaggaaattc atcctttatc atgtccagat attcctcttt agaagtcgca gtctggataa      1920
     tagttctcca tcgctcatca gattttgagg gggagactct gtgtttcttg aactctccct      1980
     tggtgatgac gtttccgtct ttggagatgt attcaagaac ttgttcagag tttttagctg      2040
     gttggatatt tggatggttt ccttcaagat caaaaaaaga agggtcacgt atattgcttc      2100
     ttttatcaag ctgaataagg cagtgaagat ggggagtacc atcctggtgg agttcagtag      2160
     caatagcgat aaagaaaata gcaaaacttg aaagtttatc ccagaggaaa tctctgagat      2220
     tttctgcact agagctgcag cgtggataag taaggaagac atatttggtt tggagacgga      2280
     aggatttggt tttctggggg gctgaaggca tattaaggct caagtaccgt acgatgaaac      2340
     tctattctta actagtgagt gagccagtga gccaggttta tgtggaattt atattggtag      2400
     gtggaccttt aggatcttga cgcgtggggc gcactcacgg attttaatat tacccgtgag      2460
     tgctctcttg gccccacgcg aggcctttag gccgagcgaa agtgcgacgt agtttccttt      2520
     agtggttcat gagtcattaa agtgctatat aaagatgaca tgacatccca aagttgaaa       2579
//