ID   JN989442; SV 1; circular; genomic DNA; STD; VRL; 2579 BP.
XX
AC   JN989442;
XX
DT   20-MAR-2012 (Rel. 112, Created)
DT   17-MAY-2012 (Rel. 112, Last updated, Version 2)
XX
DE   Tobacco yellow dwarf virus-A isolate TYDV-A_AU_2562_2010, complete genome.
XX
KW   .
XX
OS   Tobacco yellow dwarf virus-A
OC   Viruses; Geminiviridae; Mastrevirus.
XX
RN   [1]
RP   1-2579
RX   PUBMED; 22406325.
RA   Hadfield J., Thomas J.E., Schwinghamer M.W., Kraberger S., Stainton D.,
RA   Dayaram A., Parry J.N., Pande D., Martin D.P., Varsani A.;
RT   "Molecular characterisation of dicot-infecting mastreviruses from
RT   Australia";
RL   Virus Res. 166(1-2):13-22(2012).
XX
RN   [2]
RP   1-2579
RA   Hadfield J., Thomas J.E., Schwinghamer M.W., Parry J.N., Kraberger S.,
RA   Stainton D., Dayaram A., Pande D., Martin D.P., Varsani A.;
RT   ;
RL   Submitted (03-NOV-2011) to the INSDC.
RL   School of Biological Sciences, University of Canterbury, Private Bag 4800,
RL   Christchurch 8140, New Zealand
XX
DR   MD5; 51810b8065db1eaf11986e35a5194a62.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2579
FT                   /organism="Tobacco yellow dwarf virus-A"
FT                   /host="bean"
FT                   /isolate="TYDV-A_AU_2562_2010"
FT                   /mol_type="genomic DNA"
FT                   /country="Australia"
FT                   /lat_lon="34.6 S 146.41 E"
FT                   /collection_date="2010"
FT                   /db_xref="taxon:1162558"
FT   CDS             1..309
FT                   /codon_start=1
FT                   /product="movement protein"
FT                   /db_xref="GOA:H9BAJ6"
FT                   /db_xref="InterPro:IPR002621"
FT                   /db_xref="UniProtKB/TrEMBL:H9BAJ6"
FT                   /protein_id="AFD63077.1"
FT                   /translation="MYPAKYQVFPSGINYSDTPVGTFEQYQPQKAGESSEHFFSKVVVA
FT                   LIVILFAVGIVYLAYTLFLKDLILLLKAKKQKTTTEIGFGNTPLRRPGEGNPNGGPV"
FT   CDS             293..1057
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /db_xref="GOA:H9BAJ7"
FT                   /db_xref="InterPro:IPR000143"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="UniProtKB/TrEMBL:H9BAJ7"
FT                   /protein_id="AFD63076.1"
FT                   /translation="MAGRYKGLVYSRKRGRYGKTYQALGVKSQRELEQLVNQPGRPVPN
FT                   RRPALQVAEYLWTTNKAGVTFSPGGSTFLITNYPQGANENCRHTNRTITYKMAVKTWVA
FT                   LDGSMVSRVAKFPIYFWLVYDKNPGESNPSPSAIFDSLYQDQPGTWTVTRNVCHRFVVK
FT                   KTWSCMLESNGVDPNAKQGSSYYGPGPCYQWRHVTKFFKRLGVSTEWKNSSTGDVADIK
FT                   EGALYLVCAPGGGATVRVGGRFRMYFKSVGNQ"
FT   CDS             complement(join(1212..1625,1712..2311))
FT                   /codon_start=1
FT                   /product="replication associated protein"
FT                   /db_xref="GOA:H9BAJ8"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR001301"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="InterPro:IPR027417"
FT                   /db_xref="UniProtKB/TrEMBL:H9BAJ8"
FT                   /protein_id="AFD63078.1"
FT                   /translation="MPSAPQKNKSFRLQTKYVFLTYPRCSSSAENLRDFLWDKLSRFAI
FT                   FFIAIATELHQNGIPHLHCLIQLDKRSNIRDPSFFDLEGNHPNIQPAKNSEQVLEYISK
FT                   DGNVITKGEFKKHRVSPSKSDERWRTIIQTATSKEEYLDMIKDEFPHEWATKLQWLEYS
FT                   ANKLFPPQPEIYQSTFTEEDLQCHEDLQLWRDQHLYHEPRRPGTRIPSLYICGPSRTGK
FT                   TTWARSLGRHNYWNGTIDFTVYDDHATYNVIDDIPFKFVPLWKQLIGCQSDFTVNPKYG
FT                   KKKKIKGGVPCIILCNDDEDWLKNMSPAQIEYFEANCITHFMYAGETFIAPESSSH"
FT   CDS             complement(1424..2311)
FT                   /codon_start=1
FT                   /product="RepA protein"
FT                   /db_xref="GOA:H9BAJ9"
FT                   /db_xref="InterPro:IPR001146"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="UniProtKB/TrEMBL:H9BAJ9"
FT                   /protein_id="AFD63075.1"
FT                   /translation="MPSAPQKNKSFRLQTKYVFLTYPRCSSSAENLRDFLWDKLSRFAI
FT                   FFIAIATELHQNGIPHLHCLIQLDKRSNIRDPSFFDLEGNHPNIQPAKNSEQVLEYISK
FT                   DGNVITKGEFKKHRVSPSKSDERWRTIIQTATSKEEYLDMIKDEFPHEWATKLQWLEYS
FT                   ANKLFPPQPEIYQSTFTEEDLQCHEDLQLWRDQHLYHVSVDAYRLIHNVTLVEATSDLV
FT                   WMDDISRNLEGLEPGSPPSTSADQVVPERQHGPEASEDTITGMGPSTSLSMMTTRPTTS
FT                   STTSPSNSSHSGSN"
XX
SQ   Sequence 2579 BP; 695 A; 497 C; 621 G; 766 T; 0 other;
     atgtatcccg ccaaatacca agtgttccca tctggtataa attactcaga tacccctgtt        60
     ggtacttttg agcaatatca gccgcagaaa gcgggtgagt catcggagca cttcttttcg       120
     aaagttgttg ttgctttgat tgttatcctt tttgctgtag gtatcgtata cttagcgtat       180
     acgttattct tgaaggattt gatccttctt ttgaaagcaa agaagcagaa gacgacaact       240
     gagatagggt ttggtaatac ccctctcaga agacctggtg aaggaaaccc taatggcggg       300
     ccggtataag ggtttggtct attcccggaa aaggggacgt tatggcaaga cctatcaggc       360
     tcttggcgtg aaatcacaaa gagaattgga gcagctagtt aaccaaccag ggcgtcctgt       420
     tcctaacagg cggcctgctc tacaggtcgc agagtatctg tggacgacga ataaagcagg       480
     agtgacgttt tctcctggtg ggtctacttt cctcatcact aattaccctc aaggggcgaa       540
     cgagaactgt aggcacacca accggacaat aacctacaag atggctgtga agacgtgggt       600
     tgctttggat ggctcgatgg tctctagggt tgcaaaattc ccaatctatt tctggttggt       660
     gtatgataaa aaccctggcg agagtaatcc atcgccttcc gctatttttg atagtctata       720
     tcaagatcag cctgggactt ggactgtgac tcgtaatgta tgtcacaggt ttgtcgttaa       780
     aaaaacctgg tcatgtatgt tggagtctaa tggagttgac cctaatgcta aacaagggtc       840
     ttcttactat ggtcctgggc cttgttatca gtggaggcat gttactaagt tttttaaacg       900
     tttaggggtt agcacagagt ggaagaattc ttccacaggt gatgttgctg atattaagga       960
     aggagcacta taccttgtat gtgctcctgg tggtggtgct actgtaagag ttggcggtag      1020
     attccgcatg tatttcaaat cagttggcaa tcaataaaaa tgttgttatt ttgatttcat      1080
     attaatgagc ttcagtgtag agaaattcaa atcttattaa taaaaacccg gaatacaaaa      1140
     acacacaaaa acgaaaaaaa acacccttca atcattacac actatatacc ctcctatgag      1200
     gagaggcacg ttcagtgact cgacgattca ggagcaataa atgtttcccc cgcatacata      1260
     aaatgcgtaa tacaattggc ttcaaagtat tcaatctgag cgggagacat attcttaagc      1320
     cagtcttcat cgtcgttaca tagtataata catggcactc caccctttat tttcttcttt      1380
     tttccatact tagggttgac agtaaaatca gactggcaac ctattaattg cttccagagt      1440
     gggacgaatt tgaaggggat gtcgtcgatg acgttgtagg tcgcgtggtc atcatagaca      1500
     gtgaagtcga tggtcccatt ccagtaattg tgtcttccga ggcttctggc ccatgttgtc      1560
     tttccggtac gacttggtcc gcagatgtag agggagggga tcctggttcc aggccttcta      1620
     ggttcctgga tatgtcgtcc atccaaacta agtcagatgt agcttcaaca agtgtgacgt      1680
     tatgaattag acggtaagca tctacactta catggtatag atgctggtct ctccataact      1740
     gcagatcttc atgacactgg agatcttcct cagtgaatgt ggactggtag atttcaggtt      1800
     gtggtggaaa tagtttattt gcagagtatt ccaaccactg taattttgtt gcccattcat      1860
     gaggaaattc atcctttatc atgtccagat attcctcttt agaagtcgca gtctggataa      1920
     tagttctcca tcgctcatca gatttggagg gggagactct gtgtttcttg aactctccct      1980
     tggtgatgac gtttccgtct ttggagatgt attcaagaac ttgttcagag ttcttagctg      2040
     gttggatatt tggatggttt ccttcaagat caaaaaaaga agggtcacgt atattgcttc      2100
     ttttatcaag ctgaataagg cagtgaagat ggggaatacc attctggtgg agttcagtag      2160
     caatagcgat aaagaaaata gcaaaacgtg aaagtttatc ccagaggaaa tctctgagat      2220
     tttctgcact agagctgcag cgtggataag taaggaagac atatttggtt tggagacgga      2280
     aggatttgtt tttctggggt gctgaaggca tattaaggct caagtaccgt acgatgaaac      2340
     tctattctta actagtgagt gagccagtga gccaggatga tgtggtattt atattggaag      2400
     gtggaccgtt aggatcttga cgcgtggggc gcactcacgg attttaatat tacccgtgag      2460
     tgctctcttg gccccacgcg aggcctttag gccgagcgaa agtgcgccgt agtttccttt      2520
     agtggttcat gagtcattaa attgctatat aaagatgacc tgacatccca aagttgaaa       2579
//