ID   JN989441; SV 1; circular; genomic DNA; STD; VRL; 2582 BP.
XX
AC   JN989441;
XX
DT   20-MAR-2012 (Rel. 112, Created)
DT   17-MAY-2012 (Rel. 112, Last updated, Version 2)
XX
DE   Tobacco yellow dwarf virus-A isolate TYDV-A_AU_2561_2010, complete genome.
XX
KW   .
XX
OS   Tobacco yellow dwarf virus-A
OC   Viruses; Geminiviridae; Mastrevirus.
XX
RN   [1]
RP   1-2582
RX   PUBMED; 22406325.
RA   Hadfield J., Thomas J.E., Schwinghamer M.W., Kraberger S., Stainton D.,
RA   Dayaram A., Parry J.N., Pande D., Martin D.P., Varsani A.;
RT   "Molecular characterisation of dicot-infecting mastreviruses from
RT   Australia";
RL   Virus Res. 166(1-2):13-22(2012).
XX
RN   [2]
RP   1-2582
RA   Hadfield J., Thomas J.E., Schwinghamer M.W., Parry J.N., Kraberger S.,
RA   Stainton D., Dayaram A., Pande D., Martin D.P., Varsani A.;
RT   ;
RL   Submitted (03-NOV-2011) to the INSDC.
RL   School of Biological Sciences, University of Canterbury, Private Bag 4800,
RL   Christchurch 8140, New Zealand
XX
DR   MD5; f6f6815340c3fd29e6f004e1ee27dbe4.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2582
FT                   /organism="Tobacco yellow dwarf virus-A"
FT                   /host="bean"
FT                   /isolate="TYDV-A_AU_2561_2010"
FT                   /mol_type="genomic DNA"
FT                   /country="Australia"
FT                   /lat_lon="34.6 S 146.41 E"
FT                   /collection_date="2010"
FT                   /db_xref="taxon:1162558"
FT   CDS             1..309
FT                   /codon_start=1
FT                   /product="movement protein"
FT                   /db_xref="GOA:H9BAJ6"
FT                   /db_xref="InterPro:IPR002621"
FT                   /db_xref="UniProtKB/TrEMBL:H9BAJ6"
FT                   /protein_id="AFD63071.1"
FT                   /translation="MYPAKYQVFPSGINYSDTPVGTFEQYQPQKAGESSEHFFSKVVVA
FT                   LIVILFAVGIVYLAYTLFLKDLILLLKAKKQKTTTEIGFGNTPLRRPGEGNPNGGPV"
FT   CDS             293..1057
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /db_xref="GOA:H9BAJ3"
FT                   /db_xref="InterPro:IPR000143"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="UniProtKB/TrEMBL:H9BAJ3"
FT                   /protein_id="AFD63072.1"
FT                   /translation="MAGRYKGLVYSRKKGRYGKTYQALGVKSQRELEQLVNQPGRPVSN
FT                   RRPALQVAEYLWTTNKAGVTFSPGGSTFLITNYPQGANENCRHTNRTITYKMAVKTWVA
FT                   LDGSMVSRVAKFPIYFWLVYDKNPGDSNPSPSAIFDSLYQDQPGTWTVTRNVCHRFVVK
FT                   KTWSCMLESNGVDPNAKQGSSYYGPGPCYQWRHVTKFFKRLGVSTEWKNSSTGDVADIK
FT                   EGALYLVCAPGGGATVRVGGRFRMYFKSVGNQ"
FT   CDS             complement(join(1212..1625,1712..2311))
FT                   /codon_start=1
FT                   /product="replication associated protein"
FT                   /db_xref="GOA:H9BAJ4"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR001301"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="InterPro:IPR027417"
FT                   /db_xref="UniProtKB/TrEMBL:H9BAJ4"
FT                   /protein_id="AFD63074.1"
FT                   /translation="MLSAPQKTKSFRLQTKYVFLTYPRCSSSAENLRDFLWDKLSRFAI
FT                   FFIAIATELHQDGTPHLHCLIQLDKRSNIRDPSFFDLEGNHPNIQPAKNSEQVLEYISK
FT                   DGNVITKGEFKKHRVSPSKSDERWRTIIQTATSKEEYLDMIKDEFPHEWATKLQWLEYS
FT                   ANKLFPPQPEIYQSTFTEEDLQCHKDLQLWRDQHLYHEPRRPRTRIPSLYICGPTRTGK
FT                   TTWARSLGRHNYWNGTIDFTVYDDHATYNVIDDIPFKFVPLWKQLIGCQSDFTVNPKYG
FT                   KKKKIKGGVPCIILCNDDEDWLKNMSPAQIEYFEANCITHFMYAGETFIAPESSSH"
FT   CDS             complement(1424..2311)
FT                   /codon_start=1
FT                   /product="RepA protein"
FT                   /db_xref="GOA:H9BAJ5"
FT                   /db_xref="InterPro:IPR001146"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="UniProtKB/TrEMBL:H9BAJ5"
FT                   /protein_id="AFD63073.1"
FT                   /translation="MLSAPQKTKSFRLQTKYVFLTYPRCSSSAENLRDFLWDKLSRFAI
FT                   FFIAIATELHQDGTPHLHCLIQLDKRSNIRDPSFFDLEGNHPNIQPAKNSEQVLEYISK
FT                   DGNVITKGEFKKHRVSPSKSDERWRTIIQTATSKEEYLDMIKDEFPHEWATKLQWLEYS
FT                   ANKLFPPQPEIYQSTFTEEDLQCHKDLQLWRDQHLYHVSVDAYRLIHNVTLVEATSDLV
FT                   WMDDISRNLEGLEPGSPPSTSADQLVPERPLGPEASEDTITGMGPSTSLSMMTTRPTTS
FT                   STTSLSNSSHYGSN"
XX
SQ   Sequence 2582 BP; 695 A; 490 C; 628 G; 769 T; 0 other;
     atgtatcccg ccaaatacca agtgttccca tctggtataa attactcaga tacccctgtt        60
     ggtacttttg agcaatatca gccgcagaaa gcgggtgagt catcggagca cttcttttcg       120
     aaagttgttg ttgctttgat tgttatcctt tttgctgtag gtatcgtata cttagcgtat       180
     acgttattct tgaaggattt gatccttctt ttgaaagcaa agaagcagaa gacgacaact       240
     gagatagggt ttggtaatac ccctctcaga agacccggtg aaggaaaccc taatggcggg       300
     ccggtataag ggtttggtct attcccggaa aaagggacgt tatggcaaga cgtatcaagc       360
     tcttggcgtg aaatcccaaa gggagttgga gcagttagtt aatcaaccag ggcgtcctgt       420
     ttctaacagg cgtcctgctc tacaggtcgc agagtatctg tggacgacga ataaagcagg       480
     agtgacgttt tctcctggtg ggtctacttt cctcatcact aattaccctc aaggggcgaa       540
     cgagaactgt aggcacacca accggacaat aacctacaag atggctgtga agacgtgggt       600
     tgctttggat ggctcgatgg tctctagggt tgcgaagttc ccaatctatt tctggttggt       660
     gtatgataaa aaccctggag atagtaatcc atcgccttcc gctatttttg atagtctata       720
     tcaagatcag cctgggactt ggactgtgac tcgtaatgta tgtcacaggt ttgtcgttaa       780
     aaaaacctgg tcatgtatgt tggagtctaa tggagttgac cctaatgcta aacaagggtc       840
     ttcttactat ggtcctgggc cttgttatca gtggaggcat gttactaagt tttttaaacg       900
     tttaggggtt agcacagagt ggaagaattc ttccacaggt gatgttgctg atattaagga       960
     aggagcacta taccttgtat gtgctcctgg tggtggtgct actgtaagag ttggcggtag      1020
     attccgcatg tatttcaaat cagttggcaa tcaataaaaa tgttgttatt ttgatttcat      1080
     attaatgagc ttcaatgtag agaaattcaa atcttattaa tacaaacccg gaatacaaaa      1140
     acacacgaaa acgaaaaaaa acacccttca atcattacac actatatacc ctcctatgag      1200
     gagaggcacg ttcagtgact cgacgattca ggagcaataa atgtttcccc cgcatacata      1260
     aaatgcgtaa tacaattggc ttcaaagtat tcaatctgag cgggagacat attcttaagc      1320
     cagtcttcat cgtcgttaca tagtataata catggcactc ctccctttat tttcttcttt      1380
     tttccatact tagggttgac agtaaaatca gactggcaac ctattaattg cttccatagt      1440
     gggacgaatt tgaaagggat gtcgtcgatg acgttgtagg tcgcgtggtc atcatagaca      1500
     gtgaagtcga tggtcccatt ccagtaattg tgtcttccga ggcttctggc ccaagtggtc      1560
     tttccggtac gagttggtcc gcagatgtag agggagggga tcctggttcg aggccttcta      1620
     ggttcctgga tatgtcgtcc atccaaacta agtcagaggt agcttcaaca agtgtgacgt      1680
     tatgaattag gcggtaagca tctacactta catggtatag atgctggtct ctccataact      1740
     gcagatcttt atgacattgg agatcttcct cagtgaatgt ggactggtag atttcaggtt      1800
     gtggtggaaa tagtttattt gcagagtatt ccaaccactg taattttgtt gcccattcat      1860
     gaggaaattc atcctttatc atgtccagat attcctcttt agaagtcgca gtctggataa      1920
     tagttctcca tcgctcatca gatttggaag gggagactct gtgtttcttg aactctcctt      1980
     tggtgatgac gtttccgtct ttggagatgt attcaagaac ttgttcagag ttcttagctg      2040
     gttggatatt tggatggttt ccttcaagat caaaaaaaga agggtcacgt atattgcttc      2100
     ttttatcaag ctgaataagg cagtgaagat ggggagtacc atcctggtgg agttcagtag      2160
     caatagcgat gaagaaaata gcaaaacgtg aaagtttatc ccagaggaaa tctctgagat      2220
     tttctgcact agagctgcag cgtggataag taaggaagac atatttggtt tggagacgga      2280
     aggattttgt tttctggggg gctgaaagca tattaaagcg caagtaccgt acgatgaaac      2340
     tctattctta actagtgagt gagccagtga gccaggatga tgtggtattt atattgggaa      2400
     ggtggaccgt taggatcttg accgcgtggg gcgcactcac ggattttaat attacccgtg      2460
     agtgctctct tggccccacg cgaggccttt aggccgagcg aaagtgcgac gtagtttcct      2520
     ttagtggttc atgagtcatt taaagtgcta tataaagatg acatgacatc ccaaagttga      2580
     aa                                                                     2582
//