Dbfetch
ID JN989441; SV 1; circular; genomic DNA; STD; VRL; 2582 BP. XX AC JN989441; XX DT 20-MAR-2012 (Rel. 112, Created) DT 17-MAY-2012 (Rel. 112, Last updated, Version 2) XX DE Tobacco yellow dwarf virus-A isolate TYDV-A_AU_2561_2010, complete genome. XX KW . XX OS Tobacco yellow dwarf virus-A OC Viruses; Geminiviridae; Mastrevirus. XX RN [1] RP 1-2582 RX PUBMED; 22406325. RA Hadfield J., Thomas J.E., Schwinghamer M.W., Kraberger S., Stainton D., RA Dayaram A., Parry J.N., Pande D., Martin D.P., Varsani A.; RT "Molecular characterisation of dicot-infecting mastreviruses from RT Australia"; RL Virus Res. 166(1-2):13-22(2012). XX RN [2] RP 1-2582 RA Hadfield J., Thomas J.E., Schwinghamer M.W., Parry J.N., Kraberger S., RA Stainton D., Dayaram A., Pande D., Martin D.P., Varsani A.; RT ; RL Submitted (03-NOV-2011) to the INSDC. RL School of Biological Sciences, University of Canterbury, Private Bag 4800, RL Christchurch 8140, New Zealand XX DR MD5; f6f6815340c3fd29e6f004e1ee27dbe4. XX FH Key Location/Qualifiers FH FT source 1..2582 FT /organism="Tobacco yellow dwarf virus-A" FT /host="bean" FT /isolate="TYDV-A_AU_2561_2010" FT /mol_type="genomic DNA" FT /country="Australia" FT /lat_lon="34.6 S 146.41 E" FT /collection_date="2010" FT /db_xref="taxon:1162558" FT CDS 1..309 FT /codon_start=1 FT /product="movement protein" FT /db_xref="GOA:H9BAJ6" FT /db_xref="InterPro:IPR002621" FT /db_xref="UniProtKB/TrEMBL:H9BAJ6" FT /protein_id="AFD63071.1" FT /translation="MYPAKYQVFPSGINYSDTPVGTFEQYQPQKAGESSEHFFSKVVVA FT LIVILFAVGIVYLAYTLFLKDLILLLKAKKQKTTTEIGFGNTPLRRPGEGNPNGGPV" FT CDS 293..1057 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:H9BAJ3" FT /db_xref="InterPro:IPR000143" FT /db_xref="InterPro:IPR000263" FT /db_xref="UniProtKB/TrEMBL:H9BAJ3" FT /protein_id="AFD63072.1" FT /translation="MAGRYKGLVYSRKKGRYGKTYQALGVKSQRELEQLVNQPGRPVSN FT RRPALQVAEYLWTTNKAGVTFSPGGSTFLITNYPQGANENCRHTNRTITYKMAVKTWVA FT LDGSMVSRVAKFPIYFWLVYDKNPGDSNPSPSAIFDSLYQDQPGTWTVTRNVCHRFVVK FT KTWSCMLESNGVDPNAKQGSSYYGPGPCYQWRHVTKFFKRLGVSTEWKNSSTGDVADIK FT EGALYLVCAPGGGATVRVGGRFRMYFKSVGNQ" FT CDS complement(join(1212..1625,1712..2311)) FT /codon_start=1 FT /product="replication associated protein" FT /db_xref="GOA:H9BAJ4" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:H9BAJ4" FT /protein_id="AFD63074.1" FT /translation="MLSAPQKTKSFRLQTKYVFLTYPRCSSSAENLRDFLWDKLSRFAI FT FFIAIATELHQDGTPHLHCLIQLDKRSNIRDPSFFDLEGNHPNIQPAKNSEQVLEYISK FT DGNVITKGEFKKHRVSPSKSDERWRTIIQTATSKEEYLDMIKDEFPHEWATKLQWLEYS FT ANKLFPPQPEIYQSTFTEEDLQCHKDLQLWRDQHLYHEPRRPRTRIPSLYICGPTRTGK FT TTWARSLGRHNYWNGTIDFTVYDDHATYNVIDDIPFKFVPLWKQLIGCQSDFTVNPKYG FT KKKKIKGGVPCIILCNDDEDWLKNMSPAQIEYFEANCITHFMYAGETFIAPESSSH" FT CDS complement(1424..2311) FT /codon_start=1 FT /product="RepA protein" FT /db_xref="GOA:H9BAJ5" FT /db_xref="InterPro:IPR001146" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:H9BAJ5" FT /protein_id="AFD63073.1" FT /translation="MLSAPQKTKSFRLQTKYVFLTYPRCSSSAENLRDFLWDKLSRFAI FT FFIAIATELHQDGTPHLHCLIQLDKRSNIRDPSFFDLEGNHPNIQPAKNSEQVLEYISK FT DGNVITKGEFKKHRVSPSKSDERWRTIIQTATSKEEYLDMIKDEFPHEWATKLQWLEYS FT ANKLFPPQPEIYQSTFTEEDLQCHKDLQLWRDQHLYHVSVDAYRLIHNVTLVEATSDLV FT WMDDISRNLEGLEPGSPPSTSADQLVPERPLGPEASEDTITGMGPSTSLSMMTTRPTTS FT STTSLSNSSHYGSN" XX SQ Sequence 2582 BP; 695 A; 490 C; 628 G; 769 T; 0 other; atgtatcccg ccaaatacca agtgttccca tctggtataa attactcaga tacccctgtt 60 ggtacttttg agcaatatca gccgcagaaa gcgggtgagt catcggagca cttcttttcg 120 aaagttgttg ttgctttgat tgttatcctt tttgctgtag gtatcgtata cttagcgtat 180 acgttattct tgaaggattt gatccttctt ttgaaagcaa agaagcagaa gacgacaact 240 gagatagggt ttggtaatac ccctctcaga agacccggtg aaggaaaccc taatggcggg 300 ccggtataag ggtttggtct attcccggaa aaagggacgt tatggcaaga cgtatcaagc 360 tcttggcgtg aaatcccaaa gggagttgga gcagttagtt aatcaaccag ggcgtcctgt 420 ttctaacagg cgtcctgctc tacaggtcgc agagtatctg tggacgacga ataaagcagg 480 agtgacgttt tctcctggtg ggtctacttt cctcatcact aattaccctc aaggggcgaa 540 cgagaactgt aggcacacca accggacaat aacctacaag atggctgtga agacgtgggt 600 tgctttggat ggctcgatgg tctctagggt tgcgaagttc ccaatctatt tctggttggt 660 gtatgataaa aaccctggag atagtaatcc atcgccttcc gctatttttg atagtctata 720 tcaagatcag cctgggactt ggactgtgac tcgtaatgta tgtcacaggt ttgtcgttaa 780 aaaaacctgg tcatgtatgt tggagtctaa tggagttgac cctaatgcta aacaagggtc 840 ttcttactat ggtcctgggc cttgttatca gtggaggcat gttactaagt tttttaaacg 900 tttaggggtt agcacagagt ggaagaattc ttccacaggt gatgttgctg atattaagga 960 aggagcacta taccttgtat gtgctcctgg tggtggtgct actgtaagag ttggcggtag 1020 attccgcatg tatttcaaat cagttggcaa tcaataaaaa tgttgttatt ttgatttcat 1080 attaatgagc ttcaatgtag agaaattcaa atcttattaa tacaaacccg gaatacaaaa 1140 acacacgaaa acgaaaaaaa acacccttca atcattacac actatatacc ctcctatgag 1200 gagaggcacg ttcagtgact cgacgattca ggagcaataa atgtttcccc cgcatacata 1260 aaatgcgtaa tacaattggc ttcaaagtat tcaatctgag cgggagacat attcttaagc 1320 cagtcttcat cgtcgttaca tagtataata catggcactc ctccctttat tttcttcttt 1380 tttccatact tagggttgac agtaaaatca gactggcaac ctattaattg cttccatagt 1440 gggacgaatt tgaaagggat gtcgtcgatg acgttgtagg tcgcgtggtc atcatagaca 1500 gtgaagtcga tggtcccatt ccagtaattg tgtcttccga ggcttctggc ccaagtggtc 1560 tttccggtac gagttggtcc gcagatgtag agggagggga tcctggttcg aggccttcta 1620 ggttcctgga tatgtcgtcc atccaaacta agtcagaggt agcttcaaca agtgtgacgt 1680 tatgaattag gcggtaagca tctacactta catggtatag atgctggtct ctccataact 1740 gcagatcttt atgacattgg agatcttcct cagtgaatgt ggactggtag atttcaggtt 1800 gtggtggaaa tagtttattt gcagagtatt ccaaccactg taattttgtt gcccattcat 1860 gaggaaattc atcctttatc atgtccagat attcctcttt agaagtcgca gtctggataa 1920 tagttctcca tcgctcatca gatttggaag gggagactct gtgtttcttg aactctcctt 1980 tggtgatgac gtttccgtct ttggagatgt attcaagaac ttgttcagag ttcttagctg 2040 gttggatatt tggatggttt ccttcaagat caaaaaaaga agggtcacgt atattgcttc 2100 ttttatcaag ctgaataagg cagtgaagat ggggagtacc atcctggtgg agttcagtag 2160 caatagcgat gaagaaaata gcaaaacgtg aaagtttatc ccagaggaaa tctctgagat 2220 tttctgcact agagctgcag cgtggataag taaggaagac atatttggtt tggagacgga 2280 aggattttgt tttctggggg gctgaaagca tattaaagcg caagtaccgt acgatgaaac 2340 tctattctta actagtgagt gagccagtga gccaggatga tgtggtattt atattgggaa 2400 ggtggaccgt taggatcttg accgcgtggg gcgcactcac ggattttaat attacccgtg 2460 agtgctctct tggccccacg cgaggccttt aggccgagcg aaagtgcgac gtagtttcct 2520 ttagtggttc atgagtcatt taaagtgcta tataaagatg acatgacatc ccaaagttga 2580 aa 2582 //