ID   JN989440; SV 1; circular; genomic DNA; STD; VRL; 2580 BP.
XX
AC   JN989440;
XX
DT   20-MAR-2012 (Rel. 112, Created)
DT   17-MAY-2012 (Rel. 112, Last updated, Version 2)
XX
DE   Tobacco yellow dwarf virus-A isolate TYDV-A_AU_196_1986, complete genome.
XX
KW   .
XX
OS   Tobacco yellow dwarf virus-A
OC   Viruses; Geminiviridae; Mastrevirus.
XX
RN   [1]
RP   1-2580
RX   PUBMED; 22406325.
RA   Hadfield J., Thomas J.E., Schwinghamer M.W., Kraberger S., Stainton D.,
RA   Dayaram A., Parry J.N., Pande D., Martin D.P., Varsani A.;
RT   "Molecular characterisation of dicot-infecting mastreviruses from
RT   Australia";
RL   Virus Res. 166(1-2):13-22(2012).
XX
RN   [2]
RP   1-2580
RA   Hadfield J., Thomas J.E., Schwinghamer M.W., Parry J.N., Kraberger S.,
RA   Stainton D., Dayaram A., Pande D., Martin D.P., Varsani A.;
RT   ;
RL   Submitted (03-NOV-2011) to the INSDC.
RL   School of Biological Sciences, University of Canterbury, Private Bag 4800,
RL   Christchurch 8140, New Zealand
XX
DR   MD5; cb1919bb51c714f1050995d7084e2471.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2580
FT                   /organism="Tobacco yellow dwarf virus-A"
FT                   /host="tobacco"
FT                   /isolate="TYDV-A_AU_196_1986"
FT                   /mol_type="genomic DNA"
FT                   /country="Australia"
FT                   /lat_lon="36.55 S 146.72 E"
FT                   /collection_date="1986"
FT                   /db_xref="taxon:1162558"
FT   CDS             1..309
FT                   /codon_start=1
FT                   /product="movement protein"
FT                   /db_xref="GOA:H9BAJ6"
FT                   /db_xref="InterPro:IPR002621"
FT                   /db_xref="UniProtKB/TrEMBL:H9BAJ6"
FT                   /protein_id="AFD63069.1"
FT                   /translation="MYPAKYQVFPSGINYSDTPVGTFEQYQPQKAGESSEHFFSKVVVA
FT                   LIVILFAVGIVYLAYTLFLKDLILLLKAKKQKTTTEIGFGNTPLRRPGEGNPNGGPV"
FT   CDS             293..1057
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /db_xref="GOA:H9BAI9"
FT                   /db_xref="InterPro:IPR000143"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="UniProtKB/TrEMBL:H9BAI9"
FT                   /protein_id="AFD63068.1"
FT                   /translation="MAGRYKGLVYSRKRGRYGKTYQALGVKSQRELEQLVNQPGRPVSN
FT                   RRPALQVAEYLWTTNKAGVTFSPGGSTFLITNFPQGANENCRHTNRTITYKMAVKTWVA
FT                   LDGSMVSRVAKFPIYFWLVYDKNPGESNPSPSAIFDSLYQDQPGTWTVTRNVCHRFVVK
FT                   KTWSCMLESNGVDPNAKQGSSYYGPGPCYQWRHVTKFFKRLGVSTEWKNSSTGDVADIK
FT                   EGALYLVCAPGGGATVRVGGRFRMYFKSVGNQ"
FT   CDS             complement(join(1213..1626,1713..2312))
FT                   /codon_start=1
FT                   /product="replication associated protein"
FT                   /db_xref="GOA:H9BAJ0"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR001301"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="InterPro:IPR027417"
FT                   /db_xref="UniProtKB/TrEMBL:H9BAJ0"
FT                   /protein_id="AFD63070.1"
FT                   /translation="MPSAPQKTKSFRLQTKYVFLTYPRCSSSAENLRDFLWDKLSRFAI
FT                   FFIAIATELHQDGTPHLHCLIQLDKRSNIRDPSFFDLEGNHPNIQPAKNSEQVLEYISK
FT                   DGNVITKGEFKKHRVSPSKSDERWRTIIQTATSKEEYLDMIKDEFPHEWATKLQWLEYS
FT                   ANKLFPPQPEIYQATFTEEDLQCHEDLQLWRDQHLYHEPRRAGTRIPSLYICGPSRTGK
FT                   TTWARSLGRHNYWNGTIDFTVYDDHATYNVIDDIPFKFVPLWKQLIGCQSDFTVNPKYG
FT                   KKKKIKGGVPCIILCNDDEDWLKNMSPAQIEYFEANCITHFMYAGETFIAPESSSH"
FT   CDS             complement(1425..2312)
FT                   /codon_start=1
FT                   /product="RepA protein"
FT                   /db_xref="GOA:H9BAJ1"
FT                   /db_xref="InterPro:IPR001146"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="UniProtKB/TrEMBL:H9BAJ1"
FT                   /protein_id="AFD63067.1"
FT                   /translation="MPSAPQKTKSFRLQTKYVFLTYPRCSSSAENLRDFLWDKLSRFAI
FT                   FFIAIATELHQDGTPHLHCLIQLDKRSNIRDPSFFDLEGNHPNIQPAKNSEQVLEYISK
FT                   DGNVITKGEFKKHRVSPSKSDERWRTIIQTATSKEEYLDMIKDEFPHEWATKLQWLEYS
FT                   ANKLFPPQPEIYQATFTEEDLQCHEDLQLWRDQHLYHVSVDAYRLVHNVTLVEAHSDLV
FT                   WMDDISRNLEGLEPGSPPSTSADQVVPERQHGPEASEGTITGMGPSTSLSMMTTRPTTS
FT                   STTSPSNSSHSGSN"
XX
SQ   Sequence 2580 BP; 683 A; 499 C; 625 G; 773 T; 0 other;
     atgtatcccg ccaaatacca agtgttccca tctggtataa attactcaga tacccctgtt        60
     ggtacttttg agcaatatca gccgcagaaa gcgggtgagt catcggagca cttcttttcg       120
     aaagttgttg ttgctttgat tgttatcctt tttgctgtag gtatcgtata cttagcgtat       180
     acgttattct tgaaggattt gatccttctt ttgaaagcaa agaagcagaa gacgacaact       240
     gagatagggt ttggtaatac ccctctcaga agacctggtg aaggaaaccc taatggcggg       300
     ccggtataag ggtttggttt attcccggaa aaggggacgt tatggcaaga cctatcaggc       360
     tcttggcgtg aaatcacaaa gagaattgga gcagctagtt aaccaaccag ggcgtcctgt       420
     ttctaacagg cgtcctgctc tacaggtcgc agagtatctg tggacgacga ataaagcagg       480
     agtgacgttt tctcctggtg ggtctacttt cctcatcact aatttccctc aaggggcgaa       540
     cgagaactgt aggcacacca accggacaat tacctacaag atggctgtga agacgtgggt       600
     tgctttggat ggctcgatgg tctctagggt tgcaaaattc ccaatctatt tctggttggt       660
     gtatgataaa aaccctggcg agagtaatcc atcgccttcc gctatttttg atagtctata       720
     tcaagatcag cctgggactt ggactgtgac tcgtaatgta tgtcacaggt ttgtcgttaa       780
     aaaaacctgg tcatgtatgt tggagtctaa tggagttgac cctaatgcta aacaagggtc       840
     ttcttactat ggtcctgggc cttgttatca gtggaggcat gttactaagt tttttaaacg       900
     tttaggggtt agcacagagt ggaagaattc ttccactggt gatgttgctg atattaagga       960
     aggagcacta taccttgtat gtgctcctgg tggtggtgct actgtaagag ttggcggtag      1020
     attccgcatg tatttcaaat cagttggcaa tcaataaaaa tgtcgttatt ttgatttcat      1080
     attaatgagc ttcagtgtag agaaattcaa atcttattaa taaaaacccg gaatacaaaa      1140
     acacacgaaa acgaaaaaaa gacaccttac aatcattaca cactatatac cctcctatga      1200
     ggagaggcac gttcagtgac tcgacgattc aggagcaata aatgtttccc ccgcatacat      1260
     aaaatgcgta atacaattgg cttcaaagta ttcaatctga gcgggagaca tattcttcag      1320
     ccagtcttca tcgtcgttac atagtataat acatggcact cctcccttta ttttcttctt      1380
     ttttccatac ttagggttga cagtaaaatc agactggcaa cctattaatt gcttccagag      1440
     tgggacgaat ttgaagggga tgtcgtcgat gacgttgtag gtcgcgtggt catcatagac      1500
     agtgaagtcg atggtcccat tccagtaatt gtgccttccg aggcttctgg cccatgttgt      1560
     ctttccggta cgacttggtc cgcagatgta gagggagggg atcctggttc cagcccttct      1620
     aggttcctgg atatgtcgtc catccaaact aagtcagagt gtgcttcaac aagtgtgacg      1680
     ttatgaacta gacggtaagc atctacactt acgtggtata gatgctggtc tctccataac      1740
     tgcagatctt catgacattg gagatcttcc tcagtgaatg tggcctggta gatttcaggt      1800
     tgtggtggaa atagtttatt tgcagagtat tccaaccact gtaattttgt tgcccattca      1860
     tgaggaaatt catcctttat catgtccaga tattcctctt tagaagtcgc agtctggata      1920
     atagttcgcc atcgctcatc agatttggaa ggggagactc tgtgtttctt gaactctcct      1980
     ttggtgatga cgtttccgtc tttggagatg tattcaagaa cttgttcaga gtttttagct      2040
     ggttggatat ttggatggtt tccttcaaga tcaaaaaaag aagggtcacg tatattgctt      2100
     cttttgtcaa gctgaataag gcagtgaaga tggggagtac catcctggtg gagttcagta      2160
     gcaatagcga taaagaaaat agcaaaacgt gaaagtttat cccagaggaa atctctgaga      2220
     ttttctgcac tagagctgca gcgtggataa gtaaggaaga catatttggt ttggagtctg      2280
     aaggatttgg ttttctgggg ggctgaaggc atattaaggc tcaagtaccg tacgatgaaa      2340
     ctctattctt aactagtgag tgagccagtg agccaggttt atgtggcatt tatattggta      2400
     ggtggaccgt taggatcttg acgcgtgggg cacactcacg gattttaata ttacccgtga      2460
     gtgctctctt ggccccacgc gagcccttta gggcgagcga aagtgcgccg tagtttcctt      2520
     tagtggttca tgagtcatta tagtgctata taaagatgac ctgacatccc aaagttgaaa      2580
//