Dbfetch
ID JN989433; SV 1; circular; genomic DNA; STD; VRL; 2589 BP. XX AC JN989433; XX DT 20-MAR-2012 (Rel. 112, Created) DT 17-MAY-2012 (Rel. 112, Last updated, Version 2) XX DE Chickpea chlorosis virus-E isolate CpCV-E_AU_3495Mb_2002, complete genome. XX KW . XX OS Chickpea chlorosis virus-E OC Viruses; Geminiviridae; Mastrevirus. XX RN [1] RP 1-2589 RX PUBMED; 22406325. RA Hadfield J., Thomas J.E., Schwinghamer M.W., Kraberger S., Stainton D., RA Dayaram A., Parry J.N., Pande D., Martin D.P., Varsani A.; RT "Molecular characterisation of dicot-infecting mastreviruses from RT Australia"; RL Virus Res. 166(1-2):13-22(2012). XX RN [2] RP 1-2589 RA Hadfield J., Thomas J.E., Schwinghamer M.W., Parry J.N., Kraberger S., RA Stainton D., Dayaram A., Pande D., Martin D.P., Varsani A.; RT ; RL Submitted (03-NOV-2011) to the INSDC. RL School of Biological Sciences, University of Canterbury, Private Bag 4800, RL Christchurch 8140, New Zealand XX DR MD5; d6679e3fb68ee5a018068c229e2d0d73. XX FH Key Location/Qualifiers FH FT source 1..2589 FT /organism="Chickpea chlorosis virus-E" FT /host="Cicer arietinum (chickpea)" FT /isolate="CpCV-E_AU_3495Mb_2002" FT /mol_type="genomic DNA" FT /country="Australia" FT /lat_lon="31.67 S 148.08 E" FT /collection_date="2002" FT /db_xref="taxon:1162556" FT CDS 1..309 FT /codon_start=1 FT /product="movement protein" FT /db_xref="GOA:H9BAE0" FT /db_xref="InterPro:IPR002621" FT /db_xref="UniProtKB/TrEMBL:H9BAE0" FT /protein_id="AFD63041.1" FT /translation="MFPSLYQIFPSEENYSYTPVQTQESFSGAKAGDSSEHVFSKVVVA FT LIIILFSVGIIYLAYTLFLKDLILLLKAKKQRTTTEIGFGNTPARPGSQPQQNGGPI" FT CDS 293..1057 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:H9BAG1" FT /db_xref="InterPro:IPR000143" FT /db_xref="InterPro:IPR000263" FT /db_xref="UniProtKB/TrEMBL:H9BAG1" FT /protein_id="AFD63042.1" FT /translation="MAGRFKGQVYSRKRGRNAKVYQALGVKSQRELEQLVNQPGRPVPN FT RRPSLQVAEYLWTTNKAGVTFSPGGGTYLFTNYPQGANENCRHTNRTITYKMDIKCWVA FT LDGSMVARVAKFPVHFWLVYDKNPGDTNPSPSAIFDSLYQDQPGTWTVTRNVCHRFVVK FT KSWSVMLESNGIDPSKSQSTSYYGPGPCNNWRHMTKFFKRLGVSTEWKNSSTGDVADIK FT EGALYLVCAPSGGATIKVGGRFRMYFKSVGNQ" FT CDS complement(join(1219..1632,1722..2321)) FT /codon_start=1 FT /product="replication associated protein" FT /db_xref="GOA:H9BAF8" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:H9BAF8" FT /protein_id="AFD63039.1" FT /translation="MPSSSTRQNNFRLQTKYVFLTYPHCSSTATSLRDFLWEKLSRFAI FT FFIAVATELHQDGTPHLHCLLQLDKRGDIRDPSFFDFEGNHPNIQPAKNSEQVLDYISK FT DGNVITRGDFRKHKVSPTKHDERWRNIIQTATTKEEYLGMIRDQFPHEWATKLQWLEYS FT ANKLFPDIEPPYENPFSPIDLQCHEEIQEWLNRDLYVEPEQLQHRRNSLYICGPTRTGK FT TSWARSLGRHNYFNGGVDFTTYDTKATYNIIDDIPFKFCPNWKQLVGSQKDFTVNPKYG FT KKKRIKGGIPCIILVNNDDDWLLDMSSSQKEYFESNCKIHYMNSEETFIASNASSH" FT CDS complement(1431..2321) FT /codon_start=1 FT /product="RepA protein" FT /db_xref="GOA:H9BAF9" FT /db_xref="InterPro:IPR001146" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:H9BAF9" FT /protein_id="AFD63040.1" FT /translation="MPSSSTRQNNFRLQTKYVFLTYPHCSSTATSLRDFLWEKLSRFAI FT FFIAVATELHQDGTPHLHCLLQLDKRGDIRDPSFFDFEGNHPNIQPAKNSEQVLDYISK FT DGNVITRGDFRKHKVSPTKHDERWRNIIQTATTKEEYLGMIRDQFPHEWATKLQWLEYS FT ANKLFPDIEPPYENPFSPIDLQCHEEIQEWLNRDLYVVSVDAYTLIHPNINYQTATEDL FT IWMDHFTRNPNNSNTEGTPSTSADQLVPERPAGLAVSEDTTTLTEEWTSPRTTLRPPTI FT SSTTSPSSSAQTGSN" XX SQ Sequence 2589 BP; 711 A; 483 C; 633 G; 762 T; 0 other; atgtttccct ccctttatca aatattccct tctgaggaga attactcgta tacccctgtt 60 cagacgcagg agtcgttttc tggtgcgaaa gcaggtgatt catccgagca cgttttctcc 120 aaagtcgtcg ttgcgttaat tattattctt ttttcagtgg gaatcattta tcttgcgtat 180 actttatttt taaaagattt gatattatta ttaaaggcga aaaagcagag gactacgaca 240 gagatagggt ttggtaatac ccctgctaga cccggttctc aacctcagca aaatggcggg 300 ccgatttaag ggacaggtgt acagcaggaa acggggtcgt aatgcaaagg tgtatcaggc 360 tttgggagtt aaatctcagc gggagttgga gcagttagtt aaccaaccag gacgtcctgt 420 tccgaacaga cgtccgtcat tgcaggtcgc agagtatctg tggacgacca acaaagctgg 480 tgtgacgttt tcgcctggtg ggggaacgta tttgttcact aattaccctc aaggggcgaa 540 cgagaactgc aggcacacta accggaccat aacgtacaag atggatatca agtgttgggt 600 tgccctggat ggttctatgg tggctagggt tgcgaagttc ccagtccatt tctggttagt 660 gtacgacaag aaccctggtg atacgaatcc ttctccatcg gctatttttg atagtctcta 720 tcaagatcag cctgggactt ggactgtaac gaggaatgtg tgtcataggt tcgtcgttaa 780 aaagtcttgg tccgtgatgc tggagtccaa tgggattgat cccagtaagt ctcagtccac 840 atcatattat gggcctgggc cttgtaataa ttggaggcac atgaccaaat tttttaagcg 900 tttaggagtt agtacagagt ggaagaactc ttccactggt gatgtagctg atattaaaga 960 gggagcacta tatcttgtat gtgctccgtc aggtggtgca accattaagg ttgggggtcg 1020 atttcgaatg tattttaaat ccgttggtaa tcaataaata aaatatattt ctcttatgat 1080 tttatattaa taagattcaa tattgagaac aaaaattcat tagcatcgaa atccaataca 1140 aaaaaacaca ccagaaaaaa aagcaaaacc caaacaacaa tacactatat gtatacttca 1200 aacgaaggag aggcacgttc agtgactcga cgcatttgaa gcaataaatg tctcctctga 1260 attcatgtaa tggatcttgc agttggattc aaagtattcc ttctgagagg aagacatatc 1320 taataaccag tcgtcgtcat tattaactaa tataatacat ggtattcccc ctttgatcct 1380 cttctttttg ccgtattttg ggtttacggt gaagtctttc tgcgagccca ctaattgctt 1440 ccagtttggg cagaacttga aggggatgtc gtcgatgata ttgtaggtgg ccttagtgtc 1500 gtacgtggtg aagtccactc ctccgttaaa gtagttgtgt cttccgagac tgcgagccca 1560 gctggtcttt ccggtacgag ttggtccgca gatgtagagg gagttccttc ggtgttggag 1620 ttgttcgggt tccttgtaaa atggtccatc catatcaaat cttcagttgc tgtttggtaa 1680 ttgatatttg gatgaattaa agtgtaggca tcgacgctta ccacgtacag gtctctgttc 1740 agccactcct gtatttcttc gtggcactga agatcaatgg gggagaaggg gttttcatat 1800 ggaggctcta tatctgggaa cagtttattg gcgctatatt caagccattg tagtttggtc 1860 gcccattcat gagggaactg atccctaatc atgcccaaat attcctcctt agttgttgca 1920 gtctggataa tatttcgcca tcgttcatca tgtttagtag gggagacctt gtgttttcga 1980 aagtctcctc tcgtgataac gtttccatcc tttgatatgt aatcaaggac ttgttcagaa 2040 tttttagctg gttggatatt tggatgattt ccttcaaaat caaaaaaaga agggtcacgt 2100 atatcccctc ttttatcaag ctgaagaaga cagtgaagat ggggagtacc atcttgatgt 2160 agctcagtag caacagcaat gaagaaaata gcaaaacgtg agagtttttc ccagagaaag 2220 tctctgaggc ttgttgcagt agagctgcaa tggggataag taagaaaaac atatttggtt 2280 tgaagacgga agttgttttg gcgtgttgaa gaagaaggca ttatttaggc tttcctcaaa 2340 cagtgttttg gaaactctat cttaaccagc gagtgaggaa aatgaggaag gggagtgagg 2400 tatttatttg aattgagggc gaatagcccg ctgacacgtg gggcgcactc gcggaattta 2460 atgttacccg cgagtgcctg gccccacgcg agcacgttag tgcgagcgat aatgcgagga 2520 aaaagcataa gtccgcatga ggaaaagtta gtgctatata aagatgatgt gacattaaga 2580 gagagaaca 2589 //