ID   JN989415; SV 1; circular; genomic DNA; STD; VRL; 2574 BP.
XX
AC   JN989415;
XX
DT   20-MAR-2012 (Rel. 112, Created)
DT   17-MAY-2012 (Rel. 112, Last updated, Version 2)
XX
DE   Chickpea chlorosis virus-A isolate CpCV-A_AU_3494K_2002, complete genome.
XX
KW   .
XX
OS   Chickpea chlorosis virus-A
OC   Viruses; Geminiviridae; Mastrevirus.
XX
RN   [1]
RP   1-2574
RX   PUBMED; 22406325.
RA   Hadfield J., Thomas J.E., Schwinghamer M.W., Kraberger S., Stainton D.,
RA   Dayaram A., Parry J.N., Pande D., Martin D.P., Varsani A.;
RT   "Molecular characterisation of dicot-infecting mastreviruses from
RT   Australia";
RL   Virus Res. 166(1-2):13-22(2012).
XX
RN   [2]
RP   1-2574
RA   Hadfield J., Thomas J.E., Schwinghamer M.W., Parry J.N., Kraberger S.,
RA   Stainton D., Dayaram A., Pande D., Martin D.P., Varsani A.;
RT   ;
RL   Submitted (03-NOV-2011) to the INSDC.
RL   School of Biological Sciences, University of Canterbury, Private Bag 4800,
RL   Christchurch 8140, New Zealand
XX
DR   MD5; 81e0f1c960698803729e824c65f04172.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2574
FT                   /organism="Chickpea chlorosis virus-A"
FT                   /host="Cicer arietinum (chickpea)"
FT                   /isolate="CpCV-A_AU_3494K_2002"
FT                   /mol_type="genomic DNA"
FT                   /country="Australia"
FT                   /lat_lon="31.2 S 147.67 E"
FT                   /collection_date="2002"
FT                   /db_xref="taxon:887825"
FT   CDS             1..294
FT                   /codon_start=1
FT                   /product="movement protein"
FT                   /db_xref="GOA:H9BA88"
FT                   /db_xref="InterPro:IPR002621"
FT                   /db_xref="UniProtKB/TrEMBL:H9BA88"
FT                   /protein_id="AFD62967.1"
FT                   /translation="MKYSLLRKITLIPPVQTQESFSGAKAGDSSEHVFSKVVVALIIIL
FT                   FSVGIIYLAYSLFLKDLILLLKAKKQRTTTEIGFGNTPGRPGSQPQQNVGPI"
FT   CDS             278..1042
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /db_xref="GOA:H9BA89"
FT                   /db_xref="InterPro:IPR000143"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="UniProtKB/TrEMBL:H9BA89"
FT                   /protein_id="AFD62968.1"
FT                   /translation="MSGRFKGQVYIRKRGRNAKVYQALGVKSQRELEQLVNQPGRPIAN
FT                   RRPSLQVAEYLWTTNKAGVTFSPGGGTYLFTNYPQGANENCRHTNRTITYKMAIKCWVA
FT                   LDGSMVARVAKFPVHFWLVYDKNPGDTNPSPSAIFDTLYQDQPGTWTVTRNVCHRFVVK
FT                   KSWSVMLESNGIDPSKSQSTSYYGPGPCYNWRHMTKFFKRLGVSTEWKNSSTGDVADIK
FT                   EGALYLVCAPGGGATVRVGGRFRMYFKSVGNQ"
FT   CDS             complement(join(1198..1611,1701..2300))
FT                   /codon_start=1
FT                   /product="replication associated protein"
FT                   /db_xref="GOA:H9BA90"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR001301"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="InterPro:IPR027417"
FT                   /db_xref="UniProtKB/TrEMBL:H9BA90"
FT                   /protein_id="AFD62970.1"
FT                   /translation="MPSSSKRQNNFRLQTKYVFLTYPHCSSTATSLRDFLWEKLSRFAI
FT                   FFIAVATELHQDGTPHLHCLLQLDKRGDIRDPSFFDFEGNHPNIQPAKNSEQVLDYISK
FT                   DGNVITRGDFRKHKVSPTKHDKRWRTIIQTATTKEEYLGMIRDQFPHEWATKLQWLEYS
FT                   ANKLFPDIEPPYENPFSPIDLQCHEEIQEWLNRDLYVEPEQLQHRRNSLYICGPTRTGK
FT                   TSWARSLGRHNYFNGGVDFTTYDINATYNIVDDIPFKFCPNWKQLVGSQKDFTVNPKYG
FT                   KKKRIKGGIPCIILVNNDDDWLLDMSSSQKEYFESNYKIHYMDSEETFIAPESSSH"
FT   CDS             complement(1410..2300)
FT                   /codon_start=1
FT                   /product="RepA protein"
FT                   /db_xref="GOA:H9BA91"
FT                   /db_xref="InterPro:IPR001146"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="UniProtKB/TrEMBL:H9BA91"
FT                   /protein_id="AFD62969.1"
FT                   /translation="MPSSSKRQNNFRLQTKYVFLTYPHCSSTATSLRDFLWEKLSRFAI
FT                   FFIAVATELHQDGTPHLHCLLQLDKRGDIRDPSFFDFEGNHPNIQPAKNSEQVLDYISK
FT                   DGNVITRGDFRKHKVSPTKHDKRWRTIIQTATTKEEYLGMIRDQFPHEWATKLQWLEYS
FT                   ANKLFPDIEPPYENPFSPIDLQCHEEIQEWLNRDLYVVSVDAYTLIHPNINYQTATEDL
FT                   IWMDHFTRNPNNSNTEGTPSTSADQLVPVRPLGPAVSADTTTSTEEWTSPRTTLTPPTI
FT                   SSTTSPSSSAQTGSN"
XX
SQ   Sequence 2574 BP; 690 A; 482 C; 639 G; 763 T; 0 other;
     atgaaatatt cccttctgag gaaaattact cttatacccc ctgttcagac gcaggagtct        60
     ttttctggcg cgaaagcagg tgattcatcc gagcacgttt tctccaaagt cgtcgttgct       120
     ttaattatta ttcttttttc agtgggaatc atttatcttg cctattcttt atttttaaaa       180
     gatttgatat tattattaaa ggcgaaaaag cagaggacga cgactgagat agggtttggt       240
     aatacccctg gtagacccgg ttctcaacct cagcaaaatg tcgggccgat ttaagggaca       300
     agtgtacatc aggaaaaggg gtcgtaatgc aaaggtgtat caggctctgg gagttaaatc       360
     tcaacgggag ttggagcagt tagttaacca accaggacgt cctattgcta ataggcgtcc       420
     gtcactgcag gtcgcagagt atctgtggac gaccaacaag gctggtgtga cgttctcgcc       480
     tggtggggga acttatttgt tcactaatta ccctcaaggg gcgaacgaga actgcaggca       540
     cactaaccgg accataacgt acaagatggc tatcaagtgt tgggttgcct tggatgggtc       600
     tatggtggct agggttgcaa agttcccagt ccacttctgg ttagtgtacg acaagaaccc       660
     tggtgatacg aatccttctc catcggctat ttttgatact ctgtatcaag atcagcctgg       720
     gacttggact gtaacgagga atgtgtgtca taggttcgtc gttaaaaagt cttggtccgt       780
     gatgctggag tctaatggga ttgatcccag taagtctcag tccacatcat attatgggcc       840
     tgggccttgt tataattgga ggcacatgac caaatttttt aaacgtttag gagttagtac       900
     tgagtggaag aattcttcca ctggtgacgt tgctgatatt aaggaaggag cactatacct       960
     tgtatgtgct cctggtggtg gtgctactgt aagagttggc ggtagattcc gcatgtattt      1020
     caaatccgtt ggcaatcaat aaaaatgttg ttattttgat ttcatattaa tgagcttcag      1080
     tgtagagaaa ttcaaatctt attaataaaa acccggtata caaaaacaca cgaaaaggaa      1140
     aaaaagacac cttacaatca ttacactcta tataccctcc tatgaggaga ggcacgttca      1200
     gtgactcgac gattcaggag caataaatgt ctcctctgaa tccatataat ggatcttgta      1260
     gttggattca aagtattcct tctgagagga agacatatct aatagccaat cgtcgtcatt      1320
     attaactaat ataatacatg gtattccccc tttgatcctc ttctttttgc cgtattttgg      1380
     gtttacggtg aagtccttct gggaacccac tagttgcttc cagtttgggc agaacttgaa      1440
     ggggatgtcg tcgacgatat tgtaggtggc gttaatgtcg tacgtggtga agtccactcc      1500
     tccgttgaag tagttgtgtc tgccgagact gcgggcccaa gaggtcttac cggtacgagt      1560
     tggtccgcag atgtagaggg agttccttcg gtgttggagt tgttcgggtt cctggtaaaa      1620
     tggtccatcc atatcaaatc ttcagttgct gtttggtaat tgatatttgg atgaattaaa      1680
     gtgtaagcat cgacgcttac cacgtacagg tctctgttca gccactcttg tatttcttcg      1740
     tggcactgaa gatcaatggg ggagaagggg ttttcatatg gaggctctat atctgggaac      1800
     agtttattgg cgctatattc aagccattgt agtttggtcg cccattcatg agggaactga      1860
     tccctaatca ttcccaaata ctcctcctta gttgttgcag tctggataat agttcgccat      1920
     cgtttatcat gtttagttgg ggagaccttg tgttttcgaa agtctcctct cgtgatgacg      1980
     tttccatcct ttgatatgta atcaaggact tgttcagaat ttttagctgg ttggatattt      2040
     ggatggtttc cttcaaaatc aaaaaaagaa gggtcacgta tatcccctct tttatcaagc      2100
     tgaagaagac agtgaagatg gggagtacca tcttgatgga gctcagtagc aacagcaata      2160
     aagaaaatag caaaacgtga gagtttttcc cagagaaagt ctctgaggct tgttgcagta      2220
     gagctgcaat ggggataagt aagaaaaaca tatttggttt gtagacggaa gttgttttgt      2280
     ctttttgaag aagaaggcat tatttaggct ttcctcaaac agtgttttgc aaactctatc      2340
     ttaaccagcg agtgagaaat gagaagggga gtgagggtat ttaattgtgg atggagaggg      2400
     cgaatagccc gctgacacac cgtgggggcg cactcgcgga atttaatgtt acccgcgagt      2460
     gcccggcccc acgcgagcac gttagtgcga gcgataatgc gaggaaaaag cagaaatcct      2520
     cgtgaggata agttagtgct atataaagat gatgtgacgt ttagagagag aata            2574
//