ID   JN974902; SV 1; linear; genomic RNA; STD; VRL; 2158 BP.
XX
AC   JN974902;
XX
DT   06-AUG-2012 (Rel. 113, Created)
DT   06-AUG-2012 (Rel. 113, Last updated, Version 1)
XX
DE   Citrus tristeza virus capsid protein, p18, p13, and p20 genes, complete
DE   cds.
XX
KW   .
XX
OS   Citrus tristeza virus
OC   Viruses; Riboviria; Closteroviridae; Closterovirus.
XX
RN   [1]
RP   1-2158
RA   Singh J.K., Tarafdar A., Sharma S.K., Biswas K.K.;
RT   "Occurrence and biological and molecular characterization of Citrus
RT   tristeza virus in Uttarakhand Terai area of Northern Himalayan hill region
RT   of India";
RL   Unpublished.
XX
RN   [2]
RP   1-2158
RA   Singh J.K., Tarafdar A., Sharma S.K., Biswas K.K.;
RT   ;
RL   Submitted (31-OCT-2011) to the INSDC.
RL   Plant Virology Unit, Division of Plant Pathology, Indian Agricultural
RL   Research Institute, Pusa Campus, New Delhi, Delhi 110012, India
XX
DR   MD5; 581f3156c346d3798b62f1916f7c0c14.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2158
FT                   /organism="Citrus tristeza virus"
FT                   /host="Citrus aurantifolia cv. Pant lemon"
FT                   /isolate="Pant4"
FT                   /mol_type="genomic RNA"
FT                   /country="India:Uttarakhand, Pantnagar"
FT                   /collected_by="Kajal K Biswas"
FT                   /collection_date="2010"
FT                   /identified_by="Kajal K Biswas"
FT                   /db_xref="taxon:12162"
FT   CDS             1..672
FT                   /codon_start=1
FT                   /product="capsid protein"
FT                   /note="p25"
FT                   /db_xref="GOA:I7FHL2"
FT                   /db_xref="InterPro:IPR002679"
FT                   /db_xref="UniProtKB/TrEMBL:I7FHL2"
FT                   /protein_id="AFP25726.1"
FT                   /translation="MDDETKKLKNKNKETKEGDDVVAAESSFSSVNLHIDPTLIAMNDV
FT                   RQLGTQQNAALNRDLFLTLKGKYPNLPDKDKDFHIAMMLYRLAVKSSSLQSDDDTTGMT
FT                   YTREGVEVELSDKLWTDVVFNSKGIGNRTNALRVWGRSNDALYLAFCRQNRNLSYGGRP
FT                   LDAGIPAGYHYLCADFLTGAGLTDLECAVYIQAKEQLLKKRGADEVVVTNVRQLGKFNT
FT                   R"
FT   CDS             638..1141
FT                   /codon_start=1
FT                   /product="p18"
FT                   /db_xref="InterPro:IPR008452"
FT                   /db_xref="UniProtKB/TrEMBL:G0Z9I8"
FT                   /protein_id="AFP25727.1"
FT                   /translation="MSGSLGNLTHVDLLRSDSRFLSGWWSFIVNVGDIIVRFALHVPSE
FT                   DVLNSFSAISNCTIIADGSALLKDNTVVDHLEGMNPLAHLLKLAKTTTTICFTMSNKVL
FT                   FGTTKSEPLSCLAITSDRVLFKVIMGTNVDDSRCGCSVWFYNNGTFQNGLTRCNNLVAL
FT                   FSAT"
FT   CDS             1175..1534
FT                   /codon_start=1
FT                   /product="p13"
FT                   /db_xref="InterPro:IPR009692"
FT                   /db_xref="UniProtKB/TrEMBL:D0EAM8"
FT                   /protein_id="AFP25728.1"
FT                   /translation="MSIRRVWLKVVAVITVLWYGKEPSISEGYNALMNDDFKFIDTHFS
FT                   NISYAKKCYDLANFDLDFLRVVVIPLSGSTANESRADRANISEIVESHVSDRDRMNILL
FT                   RNKRIQIPSLLPCGN"
FT   CDS             1610..2158
FT                   /codon_start=1
FT                   /product="p20"
FT                   /db_xref="InterPro:IPR021575"
FT                   /db_xref="InterPro:IPR021742"
FT                   /db_xref="UniProtKB/TrEMBL:Q3KSN2"
FT                   /protein_id="AFP25729.1"
FT                   /translation="MRAYFSVNDYISLLAKVGAVVERLYDPSVTLTEVMDEINDFNSFL
FT                   ALVHSMKSDMNGDHQDGHHEMGEHKSRLLCNIEAKLRILLDIIRRRFTRDKLLCTSATD
FT                   VMGFFVMRYMASSHTSFESVMRTELKLVVKAVLSDLSRAHKLDFSERAFAAYGILLQKG
FT                   TVATVCGQFDINLVSPSCV"
XX
SQ   Sequence 2158 BP; 591 A; 405 C; 504 G; 658 T; 0 other;
     atggacgacg agacaaagaa attgaagaac aaaaacaagg agacgaaaga aggcgacgat        60
     gttgttgcag cagagtcttc tttcagttcc gtaaacttac acatcgatcc gactctgata       120
     gcgatgaacg atgtgcgtca gttgggtacc caacagaatg ctgctttgaa tagagatttg       180
     tttcttacct tgaaagggaa gtatcctaac ttacctgaca aagataaaga ctttcacatt       240
     gctatgatgt tatatcgttt agcagttaag agttcatcgt tacaaagcga cgatgatacc       300
     acgggtatga cgtacactcg ggaaggtgtt gaagtggaac tgtctgacaa actttggaca       360
     gacgtcgtgt ttaactctaa gggtattggt aaccgtacta acgcccttcg agtctggggt       420
     agatctaacg atgcccttta tttggctttt tgtagacaga accgcaactt gagttatggt       480
     ggacgtccgt tagatgcagg aattccagcc gggtatcact acctgtgtgc agatttcttg       540
     accggagctg gcttgactga tttagaatgt gcagtgtaca tacaagctaa agagcaatta       600
     ttgaaaaagc gaggggctga tgaggtcgta gttactaatg tcaggcagct tgggaaattt       660
     aacacacgtt gatctattgc gttctgattc ccggtttcta tcgggatggt ggagtttcat       720
     tgttaacgtg ggtgacataa tcgtccggtt tgcgttacat gttcctagtg aagatgtgct       780
     gaatagtttt tcggctatat cgaattgcac aatcatagca gacggtagtg ccttactaaa       840
     agacaacacc gtcgttgacc atttagaagg catgaaccct ttggctcatt tgttaaaatt       900
     agcgaaaacg actactacta tttgttttac tatgtctaat aaggttcttt ttggtactac       960
     taaatccgaa ccacttagtt gtttagctat tacatcggat cgagttttat tcaaagttat      1020
     tatgggtact aacgttgatg attctcgatg cggctgcagt gtttggtttt acaacaatgg      1080
     gacgtttcaa aacgggttga cccgttgtaa caatctcgtc gctttgttca gcgcgactta      1140
     gacacgaagt ggccgttagg atttaattgc tgcaatgagt attcgacgtg tgtggttaaa      1200
     ggttgtggct gtaattacgg tattatggta cggtaaagaa ccttctatta gtgaaggtta      1260
     caacgctctt atgaatgatg actttaagtt tatcgacacg catttttcaa acatttctta      1320
     tgctaagaaa tgttacgatt tggctaattt cgatttagac tttctacgcg tcgttgtcat      1380
     tcctttaagt ggtagtacgg cgaatgaatc gcgtgctgat cgcgctaata tttcagaaat      1440
     tgtcgaatcg catgtaagcg accgagacag aatgaacatt ttgttgcgta acaagcggat      1500
     ccaaatccca tcgctcttac cttgcggtaa ctagagtcta ctcagtagta catctactag      1560
     tataacgtat tgaacacttt agtaaagagt tttgtttaaa ccaaacaata tgcgagctta      1620
     ctttagtgtt aacgattaca taagcctttt ggctaaggtc ggcgcagttg tggaacgttt      1680
     gtacgatccc agcgtaactc tcacggaagt gatggacgaa attaatgatt ttaactcgtt      1740
     tctcgcttta gtacactcta tgaagtcaga catgaacggt gatcatcagg atggtcacca      1800
     tgagatgggt gaacacaagt ctcgattgtt gtgcaatata gaggcgaaac tgcgaatact      1860
     tctcgacatc ataagacgtc ggtttactcg cgacaagctg ctctgtacca gcgcaacaga      1920
     cgtcatgggc ttcttcgtta tgaggtatat ggcttccagt cacaccagtt ttgaatccgt      1980
     aatgcgaacg gagctgaaat tagtagttaa agcagtacta tcggatttat cccgcgcgca      2040
     taaactagat tttagcgagc gagcctttgc ggcttacggt atccttttac aaaagggtac      2100
     tgtagcgacc gtttgtggtc agtttgacat taatttagtt tctccatctt gcgtgtag        2158
//