ID   JN941984; SV 1; linear; genomic RNA; STD; VRL; 1410 BP.
XX
AC   JN941984;
XX
DT   11-JUL-2012 (Rel. 113, Created)
DT   11-JUL-2012 (Rel. 113, Last updated, Version 1)
XX
DE   Sugarcane streak mosaic virus isolate CBC671 HC-Pro protein gene, partial
DE   cds.
XX
KW   .
XX
OS   Sugarcane streak mosaic virus
OC   Viruses; Riboviria; Potyviridae; Poacevirus.
XX
RN   [1]
RP   1-1410
RX   DOI; 10.1007/s00705-012-1297-8.
RX   PUBMED; 22481599.
RA   Bagyalakshmi K., Parameswari B., Chinnaraja C., Karuppaiah R.,
RA   Ganesh Kumar V., Viswanathan R.;
RT   "Genetic variability and potential recombination events in the HC-Pro gene
RT   of sugarcane streak mosaic virus";
RL   Arch. Virol. 157(7):1371-1375(2012).
XX
RN   [2]
RP   1-1410
RA   Bagyalakshmi K., Parameswari B., Chinnaraja C., Ganesh Kumar V.,
RA   Karuppaiah R., Viswanathan R.;
RT   ;
RL   Submitted (25-OCT-2011) to the INSDC.
RL   Pathology, Sugarcane Breeding Institute, Veerakeralam, Coimbatore,
RL   Tamilnadu 641007, India
XX
DR   MD5; 7a153689aa03b18f8ce021f87e17dfb3.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1410
FT                   /organism="Sugarcane streak mosaic virus"
FT                   /host="Saccharum hybrid cultivar CBC671"
FT                   /isolate="CBC671"
FT                   /mol_type="genomic RNA"
FT                   /country="India"
FT                   /collected_by="Bagyalakshmi, K"
FT                   /collection_date="19-Mar-2011"
FT                   /identified_by="Viswanathan, R"
FT                   /db_xref="taxon:53954"
FT   CDS             <1..>1410
FT                   /codon_start=1
FT                   /product="HC-Pro protein"
FT                   /db_xref="GOA:I6VFZ9"
FT                   /db_xref="InterPro:IPR001456"
FT                   /db_xref="InterPro:IPR031159"
FT                   /db_xref="InterPro:IPR042308"
FT                   /db_xref="UniProtKB/TrEMBL:I6VFZ9"
FT                   /protein_id="AFN26741.1"
FT                   /translation="TDGHKAKSHLFWDAVIKCHPDDHKFVDTTWNDEAYANMGYWLAAT
FT                   YPFKVACKECSSIKSVREWVQNMRSSKAYQILRGGTSKHSRDLFRWLAAIQSELMTFNI
FT                   RDAQNTQEDLNRNFLGTIPIGPIFDVANQMNQAVVDIQRGLQQMHKLITDAELTHQSRD
FT                   EQILNEIARLRGLEFMQTERLMTNMKHVAMTYRNLINTASQPLSIHTMRQLLLDARSDE
FT                   AYEFDIMRGKGAIAIVAPGVFRKFDNIYSEPGVYNSEWTHLTPGGEIRTDLDYLRTDLK
FT                   ISQLHDKIHKWPENPLVDETCIVSEGEMSYHLCERVYECFVPIPHILRVGNPQNPTLIR
FT                   IQDMIDGDTYLPRQGYCYVLQFVLMLGFVGDSMVTPFVEEVEVQIQKLGKWPLFEDYMD
FT                   TIKQLVLKFPTAAKAPTVLYVVNHAQEYIHAITTLGCVNKNEHYLNVHSVAKLHEVMAT
FT                   LNTHKIMKYRIG"
XX
SQ   Sequence 1410 BP; 457 A; 279 C; 305 G; 369 T; 0 other;
     acagatggac ataaagcaaa atcacatctg ttttgggacg cggtaataaa gtgtcatcct        60
     gatgaccaca agtttgttga tacaacatgg aacgatgagg cttatgcaaa tatgggttat       120
     tggctagctg cgacgtaccc ttttaaagtt gcttgcaaag aatgctctag tatcaagtcc       180
     gttcgtgaat gggtgcaaaa catgcgatct tctaaagcct atcaaattct aagaggcgga       240
     acatcaaagc actcgcgaga tttatttaga tggctggctg caatccaatc tgagttaatg       300
     actttcaata ttagagatgc gcaaaacaca caagaggacc ttaatagaaa ctttctcggg       360
     acaataccta tcggtccaat atttgatgtg gcgaatcaaa tgaatcaagc agtggttgat       420
     atccaaagag ggctacaaca aatgcataag ctaatcacgg atgcagaatt aacacatcaa       480
     tcgcgagatg agcaaatcct aaacgagatt gcacgactcc gagggttaga gtttatgcaa       540
     acggagaggc tcatgacgaa catgaagcat gtcgctatga cctacagaaa cttaataaac       600
     accgctagcc aaccattatc aatacataca atgcgacaac tcctacttga tgctcgtagc       660
     gacgaagctt atgaatttga tatcatgcga ggcaagggcg caattgcaat agttgcacct       720
     ggggtttttc ggaaatttga taatatatac tcagaacccg gtgtatacaa ttcagagtgg       780
     actcatttga cgccaggagg ggaaatacga actgatctcg attatttgcg cacagacctc       840
     aaaatctcgc agttgcacga caagatccat aaatggcccg aaaatccact tgttgatgaa       900
     acgtgcattg tgtctgaagg agaaatgtca taccatttgt gtgagcgagt ttacgaatgc       960
     tttgttccca taccacacat tttgcgagtt ggcaatccac agaatccaac gctcatcaga      1020
     attcaagata tgattgatgg ggatacatac ctaccacgcc aagggtattg ttatgtgtta      1080
     caatttgtac ttatgcttgg ttttgtaggt gattcgatgg tcactccgtt tgtcgaagag      1140
     gttgaagtcc aaatacagaa gcttgggaaa tggccattgt ttgaagatta catggacact      1200
     atcaaacaat tggttttgaa attcccaaca gctgccaaag ctccaactgt gctgtacgtc      1260
     gttaatcacg cacaagaata cattcatgca ataacgacac ttgggtgtgt gaataaaaac      1320
     gaacattact taaacgttca tagtgtcgca aaattgcatg aggtgatggc aacgctcaat      1380
     acacacaaaa ttatgaaata tcgtattgga                                       1410
//