ID   JN941983; SV 1; linear; genomic RNA; STD; VRL; 1410 BP.
XX
AC   JN941983;
XX
DT   11-JUL-2012 (Rel. 113, Created)
DT   11-JUL-2012 (Rel. 113, Last updated, Version 1)
XX
DE   Sugarcane streak mosaic virus isolate CBBln9605 HC-Pro protein gene,
DE   partial cds.
XX
KW   .
XX
OS   Sugarcane streak mosaic virus
OC   Viruses; Riboviria; Potyviridae; Poacevirus.
XX
RN   [1]
RP   1-1410
RX   DOI; 10.1007/s00705-012-1297-8.
RX   PUBMED; 22481599.
RA   Bagyalakshmi K., Parameswari B., Chinnaraja C., Karuppaiah R.,
RA   Ganesh Kumar V., Viswanathan R.;
RT   "Genetic variability and potential recombination events in the HC-Pro gene
RT   of sugarcane streak mosaic virus";
RL   Arch. Virol. 157(7):1371-1375(2012).
XX
RN   [2]
RP   1-1410
RA   Bagyalakshmi K., Parameswari B., Chinnaraja C., Ganesh Kumar V.,
RA   Karuppaiah R., Viswanathan R.;
RT   ;
RL   Submitted (25-OCT-2011) to the INSDC.
RL   Pathology, Sugarcane Breeding Institute, Veerakeralam, Coimbatore,
RL   Tamilnadu 641007, India
XX
DR   MD5; 735f3f041feae2cb7724a93ef733ab16.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1410
FT                   /organism="Sugarcane streak mosaic virus"
FT                   /host="Saccharum hybrid cultivar CBBln9605"
FT                   /isolate="CBBln9605"
FT                   /mol_type="genomic RNA"
FT                   /country="India"
FT                   /collected_by="Bagyalakshmi, K"
FT                   /collection_date="19-Mar-2011"
FT                   /identified_by="Viswanathan, R"
FT                   /db_xref="taxon:53954"
FT   CDS             <1..>1410
FT                   /codon_start=1
FT                   /product="HC-Pro protein"
FT                   /db_xref="GOA:I6WM07"
FT                   /db_xref="InterPro:IPR001456"
FT                   /db_xref="InterPro:IPR031159"
FT                   /db_xref="InterPro:IPR042308"
FT                   /db_xref="UniProtKB/TrEMBL:I6WM07"
FT                   /protein_id="AFN26740.1"
FT                   /translation="TDGHKAKSHLLWDAIMKCHPDDHEFVDTTWNDEAYANMGYWLAAT
FT                   YPFRVACKECSSIKSVREWVQNMRSSKAYQLLRGGTSKHSRDLFRWLAAIQSELMTFNI
FT                   RDAQTTQEALNRNFLGTIPIGPIFDVANQMNQAVVDIQRGLQQMHKLITDAELTHQSRD
FT                   EQILNEIARLRGLEFMQTERLMTNMKHVAMTYRNLINTASQPLSIHTMRQLLLDARSDE
FT                   AYEFDIMRGKGAIAIVAPGVFRKFDNVYSKPGVYNSEWTHLTPGGEIRTDFDYLRTDLK
FT                   ISQLHDKIQKWPENPLVDETCIVSEGEMSYHLCERVYECFVPIPHILRVGNPQNPTLIR
FT                   IQDMIDGDTYLPRQGYCYVLQFVLMLGFVGDSMVTPFVEEVGVQIQKLGKWPLFEDYMD
FT                   TIKQLVLKFPTAAKAPTVLYVVNHAQEYIHAITTLGCVNKNEHYLNVHSVAKLHEVMAT
FT                   LNTHKIMKYRIG"
XX
SQ   Sequence 1410 BP; 451 A; 284 C; 308 G; 367 T; 0 other;
     acagacggac ataaggcaaa atcacatcta ctttgggacg cgataatgaa atgccatcct        60
     gatgaccatg agtttgttga cacaacatgg aatgatgagg cttatgcaaa catgggttat       120
     tggttagctg caacgtaccc atttcgagtc gcctgtaaag aatgttcaag tatcaagtcc       180
     gttcgtgaat gggtgcaaaa tatgcgatct tctaaagcct atcaacttct aagaggcgga       240
     acatcaaagc actcgcgaga tctgtttaga tggctggctg caatccaatc tgaattaatg       300
     actttcaata ttagagatgc gcaaaccacc caagaggccc ttaatagaaa ttttcttggg       360
     actataccta tcggtccaat atttgatgtg gcaaatcaaa tgaatcaagc agtggttgac       420
     atccaaagag ggctacaaca gatgcataag ctaatcacgg atgcagagct aacacatcaa       480
     tcgcgagatg agcaaatcct taacgagatt gcacgactcc gagggttaga gtttatgcaa       540
     acagagaggc tcatgacgaa catgaagcat gtcgctatga cctacagaaa cttaataaac       600
     actgctagcc aaccactatc aatacataca atgcgacaac tcctacttga tgctcgcagc       660
     gacgaagctt atgaatttga tattatgcga ggcaagggcg caattgcaat agttgcacct       720
     ggggtttttc ggaaatttga taatgtatac tcaaaacccg gtgtatacaa ttcagagtgg       780
     actcatttga cgccaggagg ggaaatacga actgatttcg attatttgcg cacagacctc       840
     aaaatttcgc agttgcacga caagatccaa aaatggcctg aaaatccact tgttgatgaa       900
     acgtgcattg tgtctgaagg agaaatgtca taccacttgt gtgagcgagt ttatgaatgc       960
     tttgttccca taccacacat tttgcgagtt ggcaatccac agaatccaac gctcatcaga      1020
     attcaagata tgattgatgg ggatacatac ctaccacgcc aagggtattg ttatgtgtta      1080
     caatttgtac ttatgcttgg ttttgtaggt gattcgatgg tcactccgtt tgttgaagag      1140
     gttggagtcc agatacagaa gcttgggaaa tggccattgt ttgaagatta catggacact      1200
     atcaaacaat tggttttgaa attcccaaca gcagccaaag ctccaactgt gctgtacgtt      1260
     gttaatcacg cacaagagta cattcatgca ataacgacac tcgggtgtgt gaataaaaac      1320
     gaacattact taaacgttca tagtgtcgca aaattgcacg aggtgatggc aacgctcaac      1380
     acacacaaaa ttatgaaata tcgtattgga                                       1410
//