ID   JN941982; SV 1; linear; genomic RNA; STD; VRL; 1410 BP.
XX
AC   JN941982;
XX
DT   11-JUL-2012 (Rel. 113, Created)
DT   11-JUL-2012 (Rel. 113, Last updated, Version 1)
XX
DE   Sugarcane streak mosaic virus isolate CB93009 HC-Pro protein gene, partial
DE   cds.
XX
KW   .
XX
OS   Sugarcane streak mosaic virus
OC   Viruses; Riboviria; Potyviridae; Poacevirus.
XX
RN   [1]
RP   1-1410
RX   DOI; 10.1007/s00705-012-1297-8.
RX   PUBMED; 22481599.
RA   Bagyalakshmi K., Parameswari B., Chinnaraja C., Karuppaiah R.,
RA   Ganesh Kumar V., Viswanathan R.;
RT   "Genetic variability and potential recombination events in the HC-Pro gene
RT   of sugarcane streak mosaic virus";
RL   Arch. Virol. 157(7):1371-1375(2012).
XX
RN   [2]
RP   1-1410
RA   Bagyalakshmi K., Parameswari B., Chinnaraja C., Ganesh Kumar V.,
RA   Karuppaiah R., Viswanathan R.;
RT   ;
RL   Submitted (25-OCT-2011) to the INSDC.
RL   Pathology, Sugarcane Breeding Institute, Veerakeralam, Coimbatore,
RL   Tamilnadu 641007, India
XX
DR   MD5; 38c780fe92430734f4c5f864e7192f1f.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1410
FT                   /organism="Sugarcane streak mosaic virus"
FT                   /host="Saccharum hybrid cultivar CB93009"
FT                   /isolate="CB93009"
FT                   /mol_type="genomic RNA"
FT                   /country="India"
FT                   /collected_by="Bagyalakshmi, K"
FT                   /collection_date="19-Mar-2011"
FT                   /identified_by="Viswanathan, R"
FT                   /db_xref="taxon:53954"
FT   CDS             <1..>1410
FT                   /codon_start=1
FT                   /product="HC-Pro protein"
FT                   /db_xref="GOA:I6VQZ0"
FT                   /db_xref="InterPro:IPR001456"
FT                   /db_xref="InterPro:IPR031159"
FT                   /db_xref="InterPro:IPR042308"
FT                   /db_xref="UniProtKB/TrEMBL:I6VQZ0"
FT                   /protein_id="AFN26739.1"
FT                   /translation="RFGHKAKSHLFWDAIMKCHPDDHKFVDTTWNDEAYANMGYWLAAT
FT                   YPFRVACKECSSIKSVREWVQNMRASKAYQLLRGGTSKHSRDLFRWLAAIQSELMTFNI
FT                   RDAQNTQEDLNRNFLGTIPIGPIFDVANQMNQAVVDIQRGLQQMHKLITDAELTHQSRD
FT                   EQILNEIARLRGLEFMQTERLMTNMKHVAMTYRNLINTASQPLSIHTMRQLLLDARSDE
FT                   AYEFDIMRGKGAIAIVAPGVFRKFDNIYSEPSVYNSEWTHLTPGGEIRTDLDYLRTDLK
FT                   ISQLHDKIHKWPENPLVDETCIVSEGEMSYHLCERVYECFVPIPHIMRVGNPQNPTLIR
FT                   IQDMIDGDTYLPRQGYCYVLQFVLMLGFVGDSMVTPFVEEVGAQIQKLGKWPLFEDYMD
FT                   TIKQLVLKFPTAANAPTVLYVVNHAQEYIHAITTLGCVNKNEHYLNVHSVAKLHEVMAT
FT                   LITHKIMKYRIG"
XX
SQ   Sequence 1410 BP; 449 A; 275 C; 315 G; 371 T; 0 other;
     agattcggac ataaggcaaa atcacatcta ttctgggacg cgattatgaa gtgtcatcct        60
     gatgaccaca agtttgttga cacgacatgg aacgatgaag cttacgcaaa catgggctat       120
     tggttggctg caacatatcc atttagggtt gcttgcaaag aatgctcgag cattaaatct       180
     gtgcgtgaat gggtgcaaaa catgcgagca tcgaaagctt atcaactctt gcgaggtggc       240
     acgtcaaagc actcgcgaga tctgtttaga tggctggcgg caattcaatc tgaattaatg       300
     actttcaata tcagagatgc gcaaaacaca caagaggacc tcaataggaa tttccttgga       360
     acgataccta ttggtccaat tttcgacgtg gcgaatcaaa tgaatcaggc ggtggtcgat       420
     attcaaagag gtttacaaca gatgcataag ctaatcacgg acgcggagtt aacacatcaa       480
     tcacgagatg agcaaatttt aaatgaaatt gcgcgacttc gagggttaga atttatgcaa       540
     acagagaggc ttatgacgaa tatgaagcat gttgctatga cctacagaaa tttaataaat       600
     accgcaagcc aaccactgtc gatacacaca atgcgacaac ttttacttga tgctcgcagt       660
     gacgaggcgt atgaattcga tattatgcga ggaaagggtg caattgcaat agtcgcacct       720
     ggtgtttttc ggaaatttga taacatatac tcagaaccaa gtgtttacaa ttcagaatgg       780
     actcatttga caccaggagg ggagatacga actgatctcg attatctgcg cacagacctc       840
     aaaatctcgc aactgcatga taagattcac aaatggcctg agaatccact cgttgacgaa       900
     acgtgcattg tgtctgaagg agaaatgtca tatcatttgt gtgagcgagt ttatgaatgc       960
     tttgttccca taccacacat tatgcgagtt ggcaatccac agaatccaac gctcatcaga      1020
     attcaagata tgattgatgg ggatacatac ctaccacgcc aagggtattg ttatgtgtta      1080
     caatttgtac ttatgcttgg ttttgtaggt gattcaatgg tcactccgtt tgttgaagag      1140
     gttggagccc aaatacagaa gcttggaaaa tggccattgt ttgaagacta catggatact      1200
     atcaaacaat tggttttgaa attcccaaca gccgccaacg ctccaactgt gctgtacgtt      1260
     gttaatcacg cacaagagta cattcatgca ataacgacac ttgggtgtgt gaataaaaac      1320
     gaacattact taaacgttca tagtgtcgca aaattgcacg aggtgatggc aacgctaatc      1380
     acacacaaaa ttatgaaata tcgtattgga                                       1410
//