ID   JN941981; SV 1; linear; genomic RNA; STD; VRL; 1410 BP.
XX
AC   JN941981;
XX
DT   11-JUL-2012 (Rel. 113, Created)
DT   11-JUL-2012 (Rel. 113, Last updated, Version 1)
XX
DE   Sugarcane streak mosaic virus isolate CB419 HC-Pro protein gene, partial
DE   cds.
XX
KW   .
XX
OS   Sugarcane streak mosaic virus
OC   Viruses; Riboviria; Potyviridae; Poacevirus.
XX
RN   [1]
RP   1-1410
RX   DOI; 10.1007/s00705-012-1297-8.
RX   PUBMED; 22481599.
RA   Bagyalakshmi K., Parameswari B., Chinnaraja C., Karuppaiah R.,
RA   Ganesh Kumar V., Viswanathan R.;
RT   "Genetic variability and potential recombination events in the HC-Pro gene
RT   of sugarcane streak mosaic virus";
RL   Arch. Virol. 157(7):1371-1375(2012).
XX
RN   [2]
RP   1-1410
RA   Bagyalakshmi K., Parameswari B., Chinnaraja C., Ganesh Kumar V.,
RA   Karuppaiah R., Viswanathan R.;
RT   ;
RL   Submitted (25-OCT-2011) to the INSDC.
RL   Pathology, Sugarcane Breeding Institute, Veerakeralam, Coimbatore,
RL   Tamilnadu 641007, India
XX
DR   MD5; 07a703655e77481b926f7e1f11b172cb.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1410
FT                   /organism="Sugarcane streak mosaic virus"
FT                   /host="Saccharum hybrid cultivar CB419"
FT                   /isolate="CB419"
FT                   /mol_type="genomic RNA"
FT                   /country="India"
FT                   /collected_by="Bagyalakshmi, K"
FT                   /collection_date="19-Mar-2011"
FT                   /identified_by="Viswanathan, R"
FT                   /db_xref="taxon:53954"
FT   CDS             <1..>1410
FT                   /codon_start=1
FT                   /product="HC-Pro protein"
FT                   /db_xref="GOA:I6W9J3"
FT                   /db_xref="InterPro:IPR001456"
FT                   /db_xref="InterPro:IPR031159"
FT                   /db_xref="InterPro:IPR042308"
FT                   /db_xref="UniProtKB/TrEMBL:I6W9J3"
FT                   /protein_id="AFN26738.1"
FT                   /translation="TDGHKAKSHLFWDAIMECHPDDHKFVDTTWNDEAYANMGYWLAAT
FT                   YPFRVACKECSSIKSVREWVQNMRSSKAYQLLRGGTSKHFGDVFRRLAAIQLELMTFNF
FT                   RDAQTTQEDLNRNFLGTIPIGPIFDVANQMNQAVVDIQRGLQQMHKLITDAELTHQSRD
FT                   EQILNEIARLRGLEFMQTERLMTNMKHVAMTYRNLINTASQPLSIHTMRQLILDARSDE
FT                   AYEFDIMRGKGAIAVVAPGVFRKFDNIYSKPGVYNPEWTHLTPGGEIRTDFDYLRTDLK
FT                   ISQLHDKIHKWPENPLVDETCIVSEGEMSYHLCERVYECFVPIPHILRVGNPQNPTLIR
FT                   IQDMIDGDTYLPRQGYCYVLQFVLMLGFVGDSMVAPFVEEVGAQIQKLGKWPLFEDYMD
FT                   TIKQLVLKFPTAAKAPTVLYVVNHAQEYIHAITTLGCVNKNEHYLNVHSVAKLHEVMAT
FT                   LNTHKIMKYRIG"
XX
SQ   Sequence 1410 BP; 453 A; 268 C; 308 G; 381 T; 0 other;
     acagacggac ataaggcaaa atcacatcta ttttgggacg cgataatgga atgccatcct        60
     gatgaccata agtttgttga cacaacatgg aatgatgaag cttatgcaaa catgggttat       120
     tggttggctg caacgtaccc atttagagtt gcctgtaaag aatgttcaag tatcaagtct       180
     gttcgtgaat gggtacaaaa catgcgatct tctaaagctt atcaacttct aagaggcgga       240
     acatcaaagc acttcggaga tgtttttaga aggctggctg caatccaatt ggaattaatg       300
     actttcaatt ttagagatgc gcaaacaacc caagaggacc ttaatagaaa ctttcttgga       360
     acaataccta tcggtccaat atttgatgtg gcaaatcaaa tgaatcaagc agtggttgat       420
     atccaaagag ggctacaaca gatgcataag ctgatcacgg atgcagagct aacacatcag       480
     tcgcgagatg agcaaattct taatgaaatt gcgcgacttc gagggttaga gtttatgcag       540
     acggagaggc ttatgacaaa catgaaacat gttgctatga cctacaggaa tctaataaac       600
     actgcaagtc aaccattgtc aatacacacg atgcgacaac ttatacttga cgctcgcagt       660
     gacgaggctt atgagtttga tatcatgcga ggaaagggcg cgattgcagt agttgcacct       720
     ggtgttttca ggaagtttga taacatatac tcaaaaccag gcgtttataa cccagaatgg       780
     actcatctaa caccaggagg agaaatacga actgatttcg attacctgcg cacggacctt       840
     aaaatttcac aattgcatga caaaattcac aagtggcctg aaaacccact tgttgatgaa       900
     acatgtattg tatccgaagg ggagatgtcc tatcatttgt gcgaacgagt gtatgaatgt       960
     tttgtcccca taccacacat tttgcgagtt ggtaatccac aaaatccgac gcttatcaga      1020
     attcaagata tgattgacgg ggatacatac ttgccacgcc aaggatactg ttatgtgtta      1080
     cagttcgtac tcatgcttgg ttttgttggt gactcaatgg ttgccccctt cgttgaagag      1140
     gttggcgcgc agatacagaa gcttggcaag tggccgttat tcgaagatta tatggacact      1200
     atcaaacaat tggttttgaa atttccaaca gccgctaaag ctccgactgt gttatatgtt      1260
     gttaatcacg ctcaagagta tattcatgcg ataacaacac ttggatgtgt aaataaaaat      1320
     gaacattatt taaacgttca tagtgttgca aaattacacg aggtgatggc aacgctcaat      1380
     acacacaaaa ttatgaaata tcgtattgga                                       1410
//