ID   JN941980; SV 1; linear; genomic RNA; STD; VRL; 1410 BP.
XX
AC   JN941980;
XX
DT   11-JUL-2012 (Rel. 113, Created)
DT   11-JUL-2012 (Rel. 113, Last updated, Version 1)
XX
DE   Sugarcane streak mosaic virus isolate CBB38192 HC-Pro protein gene, partial
DE   cds.
XX
KW   .
XX
OS   Sugarcane streak mosaic virus
OC   Viruses; Riboviria; Potyviridae; Poacevirus.
XX
RN   [1]
RP   1-1410
RX   DOI; 10.1007/s00705-012-1297-8.
RX   PUBMED; 22481599.
RA   Bagyalakshmi K., Parameswari B., Chinnaraja C., Karuppaiah R.,
RA   Ganesh Kumar V., Viswanathan R.;
RT   "Genetic variability and potential recombination events in the HC-Pro gene
RT   of sugarcane streak mosaic virus";
RL   Arch. Virol. 157(7):1371-1375(2012).
XX
RN   [2]
RP   1-1410
RA   Bagyalakshmi K., Parameswari B., Chinnaraja C., Ganesh Kumar V.,
RA   Karuppaiah R., Viswanathan R.;
RT   ;
RL   Submitted (25-OCT-2011) to the INSDC.
RL   Pathology, Sugarcane Breeding Institute, Veerakeralam, Coimbatore,
RL   Tamilnadu 641007, India
XX
DR   MD5; 64e5a7e16df06952e0a406a64e5fb66f.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1410
FT                   /organism="Sugarcane streak mosaic virus"
FT                   /host="Saccharum hybrid cultivar CBB38192"
FT                   /isolate="CBB38192"
FT                   /mol_type="genomic RNA"
FT                   /country="India"
FT                   /collected_by="Bagyalakshmi, K"
FT                   /collection_date="19-Mar-2011"
FT                   /identified_by="Viswanathan, R"
FT                   /db_xref="taxon:53954"
FT   CDS             <1..>1410
FT                   /codon_start=1
FT                   /product="HC-Pro protein"
FT                   /db_xref="GOA:I6WJA1"
FT                   /db_xref="InterPro:IPR001456"
FT                   /db_xref="InterPro:IPR031159"
FT                   /db_xref="InterPro:IPR042308"
FT                   /db_xref="UniProtKB/TrEMBL:I6WJA1"
FT                   /protein_id="AFN26737.1"
FT                   /translation="SDGHKAKSHLFWDAIMECHPDDHKFVDTTWNDEAYANMGYWLAAT
FT                   YPFRVACKECSSIKSVREWVQNMRASKAYQFLRGGTSKHSGDLFRWLAAIQFELMTFNF
FT                   RDAQTTQEDFNRNFLGTIPIGPIFDVANQMNQAVVDIQGGLQQMHKLITDAELTHQSRD
FT                   EQILNEIARLRGLEFMQTERLMTNMKHVAMTYRNLINTASQPLSIHTMRQLLLDARSDE
FT                   AYEFDIMRGKGAIAVVAPGVFRKFDNIYSEPGIYNPEWTHLIPGGEIRTDFDYLRTDLK
FT                   ISQLHDKIHKWPENPLIDETCIISEGDMSYHLCERVYECFVPIPHILRVGNPQNPTLIR
FT                   IQDMIDGDTYLPRQGYCYVLQFVLMLGFVGDSMVTPFVEEVGVQIQKLGKWPLFEDYMD
FT                   TIKQLVLKFPTAAKAPTVLYVVNHAQEYIHAITTLGCVNKNEHYLNVHSVAKLHEVMAT
FT                   LNTHKIMKYRIG"
XX
SQ   Sequence 1410 BP; 454 A; 264 C; 304 G; 388 T; 0 other;
     tcagacggac ataaggcaaa atcacatcta ttttgggacg cgataatgga atgccatcct        60
     gatgaccata agtttgttga tacaacatgg aacgatgagg cttatgcaaa catgggctat       120
     tggttagctg caacgtaccc gtttagagtt gcctgcaagg aatgctcaag tattaaatct       180
     gttcgtgaat gggtgcaaaa tatgcgagct tctaaagcct atcaattctt aagaggcggc       240
     acatcaaagc attccggaga tttatttagg tggctggcag cgatccaatt tgagttaatg       300
     acttttaatt tcagagatgc ccaaaccacc caagaagatt tcaataggaa tttcctcgga       360
     acaataccca ttggcccaat ctttgacgta gcaaatcaaa tgaatcaagc agtggttgat       420
     atacagggag gtctacagca gatgcataaa ctaattacag atgcggagct aacacatcaa       480
     tcgcgagatg agcaaattct taatgaaatt gcgcgactcc gagggttaga gtttatgcag       540
     acggagagac ttatgacaaa tatgaaacat gttgctatga cctacaggaa tttaataaac       600
     actgcaagtc aaccattatc aatacacacg atgcgacaac ttctgcttga cgctcgcagt       660
     gatgaagctt atgaatttga tatcatgcgg ggaaagggcg cgattgcagt agttgcacct       720
     ggtgttttta ggaagtttga taatatatac tcagaaccag gtatttataa cccagaatgg       780
     actcatctaa taccaggagg agaaatacga actgatttcg attatctgcg cacggacctt       840
     aaaatttcgc aattgcatga caaaattcac aagtggcctg aaaacccact tattgatgaa       900
     acatgtatca tatccgaggg agatatgtcc tatcatttat gcgaacgagt gtatgaatgt       960
     tttgtcccca taccacacat cttgcgagtt ggtaatccac aaaatccgac gcttattagg      1020
     attcaagaca tgattgatgg ggatacatac ctaccacgcc aaggatattg ttatgtgtta      1080
     caatttgtac ttatgcttgg ttttgtaggt gattcaatgg ttactccgtt tgttgaagag      1140
     gttggagtcc agatacagaa gcttgggaaa tggccattgt ttgaagatta catggacact      1200
     attaaacaat tggttttgaa attcccaaca gctgccaaag ctccaactgt actgtacgtt      1260
     gttaaccatg cacaagagta cattcatgca ataacgacac ttgggtgtgt gaataaaaat      1320
     gaacattact taaacgttca tagtgttgca aaattgcacg aggtgatggc aacgctcaat      1380
     acacacaaaa ttatgaaata tcgtattgga                                       1410
//