ID   JN941979; SV 1; linear; genomic RNA; STD; VRL; 1413 BP.
XX
AC   JN941979;
XX
DT   11-JUL-2012 (Rel. 113, Created)
DT   11-JUL-2012 (Rel. 113, Last updated, Version 1)
XX
DE   Sugarcane streak mosaic virus isolate CB86010 HC-Pro protein gene, partial
DE   cds.
XX
KW   .
XX
OS   Sugarcane streak mosaic virus
OC   Viruses; Riboviria; Potyviridae; Poacevirus.
XX
RN   [1]
RP   1-1413
RX   DOI; 10.1007/s00705-012-1297-8.
RX   PUBMED; 22481599.
RA   Bagyalakshmi K., Parameswari B., Chinnaraja C., Karuppaiah R.,
RA   Ganesh Kumar V., Viswanathan R.;
RT   "Genetic variability and potential recombination events in the HC-Pro gene
RT   of sugarcane streak mosaic virus";
RL   Arch. Virol. 157(7):1371-1375(2012).
XX
RN   [2]
RP   1-1413
RA   Bagyalakshmi K., Parameswari B., Chinnaraja C., Ganesh Kumar V.,
RA   Karuppaiah R., Viswanathan R.;
RT   ;
RL   Submitted (25-OCT-2011) to the INSDC.
RL   Pathology, Sugarcane Breeding Institute, Veerakeralam, Coimbatore,
RL   Tamilnadu 641007, India
XX
DR   MD5; 01c174b88f8ead091270b8b6de20c4a7.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1413
FT                   /organism="Sugarcane streak mosaic virus"
FT                   /host="Saccharum hybrid cultivar CB86010"
FT                   /isolate="CB86010"
FT                   /mol_type="genomic RNA"
FT                   /country="India"
FT                   /collected_by="Bagyalakshmi, K"
FT                   /collection_date="19-Mar-2011"
FT                   /identified_by="Viswanathan, R"
FT                   /db_xref="taxon:53954"
FT   CDS             <1..>1413
FT                   /codon_start=1
FT                   /product="HC-Pro protein"
FT                   /db_xref="GOA:I6VFZ4"
FT                   /db_xref="InterPro:IPR001456"
FT                   /db_xref="InterPro:IPR031159"
FT                   /db_xref="InterPro:IPR042308"
FT                   /db_xref="UniProtKB/TrEMBL:I6VFZ4"
FT                   /protein_id="AFN26736.1"
FT                   /translation="TDGHKAKSHLFWDAVVKCHPDDHKFVDTTWNDEAYANMGYWLAAT
FT                   YPFRVACKECSSIKSIREWVQNMRASKAHQLLRGGTSKHSRDLFRWLAAIQSELMTFNI
FT                   RDAQNTQEDLNRNFLGTIPIGPIFDVANQMNQAVVDIQRGLQQMHKLITDAELTHQSRD
FT                   EQILNEIARLRGLEFMQTERLMTNMKHVAMTYRNLINTASQPLSIHTMRQLLLDARSDK
FT                   RMNLTSCEEKGAIAISPPVFFRKFDNIYSEPGCLQPKSGTHLTPGGGNTNMSLTYAQDL
FT                   KISQLHDKIHKWPENPLVDETCIVSEGEMSYHLCERIYECFVPIPHILRVGNPQNPTLI
FT                   RIQDMIDGDTYLPRQGYCYVLQFVLMLGFVGDSMVAPFVEEVGTHIQKLGKWPLFEDYM
FT                   DTIKQLVLKFPTAAKAPTVLYVINHAQEYIHAITTLGCVNKNEHYLNVRSVAKLHEVMA
FT                   TLNTHKIMKYRIG"
XX
SQ   Sequence 1413 BP; 456 A; 290 C; 306 G; 361 T; 0 other;
     acagacggac ataaggcaaa atcacatctg ttttgggacg cggtagttaa atgtcatcct        60
     gatgaccaca agttcgttga cacaacatgg aacgatgagg cttatgcaaa tatgggttat       120
     tggctagctg cgacgtaccc ttttagagtt gcttgcaaag aatgctctag tatcaagtct       180
     attcgtgaat gggtgcagaa tatgcgagct tccaaggctc atcagctcct aaggggcgga       240
     acatcaaagc actcgcgaga tctgtttaga tggctggctg caatccaatc cgaattaatg       300
     acttttaaca tcagggacgc tcagaacaca caagaggacc tcaatagaaa ctttcttgga       360
     actataccta ttggtccaat cttcgatgta gcgaaccaga tgaatcaggc agtggtggat       420
     atccaaagag gattgcaaca gatgcataag ttaatcacgg atgcagagct aacacatcaa       480
     tcccgagatg agcaaattct aaatgaaatt gcacgacttc gaggattaga gttcatgcaa       540
     acagaaaggc ttatgacgaa tatgaagcat gttgccatga catatagaaa tctaataaac       600
     accgcaagtc aaccgctatc aatacacacg atgcgacaac tcttactcga tgctcgcagt       660
     gacaagcgta tgaatttgac atcatgcgag gaaaagggtg caattgcaat atcgcccccg       720
     gtgttttttc ggaaatttga caatatatac tcagagccgg ggtgtctaca acccaagagt       780
     gggacccatt tgacacccgg agggggaaat acgaacatgt ctcttaccta cgcacaagac       840
     ctcaaaatat cacaattgca tgacaaaatc cataaatggc ccgagaatcc acttgttgat       900
     gagacatgca ttgtatctga aggggaaatg tcgtaccatc tgtgtgaacg aatctatgag       960
     tgttttgttc ccataccaca cattctacga gttggtaatc cccaaaatcc aacgcttatc      1020
     agaattcagg atatgattga tggggataca tatttaccac gccaagggta ttgctatgtc      1080
     ttacaatttg tacttatgct tggttttgta ggtgactcaa tggtggcccc gtttgtagaa      1140
     gaagttggaa cccatataca aaaacttggg aaatggccat tgtttgaaga ctacatggat      1200
     actattaaac aattggtttt gaaatttcca acggctgcga aagctccaac tgtgttatat      1260
     gttatcaacc acgcacaaga gtacattcac gcgataacaa cacttggatg tgtaaacaaa      1320
     aatgaacatt acttaaacgt ccgtagtgtt gcaaagttac acgaggtgat ggcaacgctc      1380
     aatacacaca aaattatgaa atatcgtatt gga                                   1413
//