ID   JN941978; SV 1; linear; genomic RNA; STD; VRL; 1410 BP.
XX
AC   JN941978;
XX
DT   11-JUL-2012 (Rel. 113, Created)
DT   11-JUL-2012 (Rel. 113, Last updated, Version 1)
XX
DE   Sugarcane streak mosaic virus isolate CB97009 HC-Pro protein gene, partial
DE   cds.
XX
KW   .
XX
OS   Sugarcane streak mosaic virus
OC   Viruses; Riboviria; Potyviridae; Poacevirus.
XX
RN   [1]
RP   1-1410
RX   DOI; 10.1007/s00705-012-1297-8.
RX   PUBMED; 22481599.
RA   Bagyalakshmi K., Parameswari B., Chinnaraja C., Karuppaiah R.,
RA   Ganesh Kumar V., Viswanathan R.;
RT   "Genetic variability and potential recombination events in the HC-Pro gene
RT   of sugarcane streak mosaic virus";
RL   Arch. Virol. 157(7):1371-1375(2012).
XX
RN   [2]
RP   1-1410
RA   Bagyalakshmi K., Parameswari B., Chinnaraja C., Ganesh Kumar V.,
RA   Karuppaiah R., Viswanathan R.;
RT   ;
RL   Submitted (25-OCT-2011) to the INSDC.
RL   Pathology, Sugarcane Breeding Institute, Veerakeralam, Coimbatore,
RL   Tamilnadu 641007, India
XX
DR   MD5; 16825e400c313c40402476660f229b5f.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1410
FT                   /organism="Sugarcane streak mosaic virus"
FT                   /host="Saccharum hybrid cultivar CB97009"
FT                   /isolate="CB97009"
FT                   /mol_type="genomic RNA"
FT                   /country="India"
FT                   /collected_by="Bagyalakshmi, K"
FT                   /collection_date="19-Mar-2011"
FT                   /identified_by="Viswanathan, R"
FT                   /db_xref="taxon:53954"
FT   CDS             <1..>1410
FT                   /codon_start=1
FT                   /product="HC-Pro protein"
FT                   /db_xref="GOA:I6WM03"
FT                   /db_xref="InterPro:IPR001456"
FT                   /db_xref="InterPro:IPR031159"
FT                   /db_xref="InterPro:IPR042308"
FT                   /db_xref="UniProtKB/TrEMBL:I6WM03"
FT                   /protein_id="AFN26735.1"
FT                   /translation="TDGHKAKSHLFWDAIMKCHPDDHKFVDTTWNDEAYANMGYWLAAT
FT                   YPFRVACKECSSIKSVREWVQNMRASKAYQLLRGGTSKHSRDLFRWLAAIQSELMTFNI
FT                   RDAQNTQEDLNRNFLGTIPIGPIFDVANQMNQAVVDIQRGLQQMHKLITDAELTHQSRD
FT                   EQILNEIARLRGLEFMQTERLMTNMKHVAMTYRNLINTASQPLSIHTMRQLLLDARSDE
FT                   AYEFDIMRGKGAIAVVAPGVFRKFDNIYSKPGVYNPEWTHLTPGGEIRTDFDYLRTDLK
FT                   ISQLHDKIHKWPENPLVDETCIVSEGEMSYHLCERMYECFVPIPHILRVGNPQNPTLIR
FT                   IQDMIDGDTYLPRQGYCYVLQFVLMLGFVGDSMVAPFVEEVGVQIQKLGKWPLFEDYMD
FT                   TIKQLVLKFPTAAKAPTVLYVVNHAQEYIHAITTLGCVNKNEHYLNVHSVAKLHEVMAT
FT                   LNTQNYMKYRIG"
XX
SQ   Sequence 1410 BP; 361 A; 314 C; 400 G; 335 T; 0 other;
     accgatggcc ataaagcgaa aagccatctg ttttgggatg cgattatgaa atgccatccg        60
     gatgatcata aatttgtgga taccacctgg aacgatgaag cgtatgcgaa catgggctat       120
     tggctggcgg cgacctatcc gtttcgtgtg gcgtgcaaag aatgcagcag cattaaaagc       180
     gtgcgtgaat gggtgcagaa catgcgtgcg agcaaagcgt atcagctgct gcgtggcggc       240
     accagcaaac atagccgtga tctgtttcgt tggctggcgg cgattcagag cgaactgatg       300
     acctttaaca ttcgtgatgc gcagaacacc caggaagatc tgaaccgtaa ctttctgggc       360
     accattccga ttggcccgat ttttgatgtg gcgaaccaga tgaaccaggc ggtggtggat       420
     attcagcgtg gcctgcagca gatgcataaa ctgattaccg atgcggaact gacccatcag       480
     agccgtgatg aacagattct gaacgaaatt gcgcgtctgc gtggcctgga atttatgcag       540
     accgaacgtc tgatgaccaa catgaaacat gtggcgatga cctatcgtaa cctgattaac       600
     accgcgagcc agccgctgag cattcatacc atgcgtcagc tgctgctgga tgcgcgtagc       660
     gatgaagcgt atgaatttga tattatgcgt ggcaaaggcg cgattgcggt ggtggcgccg       720
     ggcgtgtttc gtaaatttga taacatttat agcaaaccgg gcgtgtataa cccggaatgg       780
     acccatctga ccccgggcgg cgaaattcgt accgattttg attatctgcg taccgatctg       840
     aaaattagcc agctgcatga taaaattcat aaatggccgg aaaacccgct ggtggatgaa       900
     acctgcattg tgagcgaagg cgaaatgagc tatcatctgt gcgaacgtat gtatgaatgc       960
     tttgtgccga ttccgcatat tctgcgtgtg ggcaacccgc agaacccgac cctgattcgt      1020
     attcaggata tgattgatgg cgatacctat ctgccgcgtc agggctattg ctatgtgctg      1080
     cagtttgtgc tgatgctggg ctttgtgggc gatagcatgg tggcgccgtt tgtggaagaa      1140
     gtgggcgtgc agattcagaa actgggcaaa tggccgctgt ttgaagatta tatggatacc      1200
     attaaacagc tggtgctgaa atttccgacc gcggcgaaag cgccgaccgt gctgtatgtg      1260
     gtgaaccatg cgcaggaata tattcatgcg attaccaccc tgggctgcgt gaacaaaaac      1320
     gaacattatc tgaacgtgca tagcgtggcg aaactgcatg aagtgatggc gaccctgaac      1380
     acccagaact atatgaaata tcgtattggc                                       1410
//