ID   JN941977; SV 1; linear; genomic RNA; STD; VRL; 1410 BP.
XX
AC   JN941977;
XX
DT   11-JUL-2012 (Rel. 113, Created)
DT   11-JUL-2012 (Rel. 113, Last updated, Version 1)
XX
DE   Sugarcane streak mosaic virus isolate CB08-04 HC-Pro protein gene, partial
DE   cds.
XX
KW   .
XX
OS   Sugarcane streak mosaic virus
OC   Viruses; Riboviria; Potyviridae; Poacevirus.
XX
RN   [1]
RP   1-1410
RX   DOI; 10.1007/s00705-012-1297-8.
RX   PUBMED; 22481599.
RA   Bagyalakshmi K., Parameswari B., Chinnaraja C., Karuppaiah R.,
RA   Ganesh Kumar V., Viswanathan R.;
RT   "Genetic variability and potential recombination events in the HC-Pro gene
RT   of sugarcane streak mosaic virus";
RL   Arch. Virol. 157(7):1371-1375(2012).
XX
RN   [2]
RP   1-1410
RA   Bagyalakshmi K., Parameswari B., Chinnaraja C., Ganesh Kumar V.,
RA   Karuppaiah R., Viswanathan R.;
RT   ;
RL   Submitted (25-OCT-2011) to the INSDC.
RL   Pathology, Sugarcane Breeding Institute, Veerakeralam, Coimbatore,
RL   Tamilnadu 641007, India
XX
DR   MD5; 35f799cc39976ff04c00e12afd00d352.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1410
FT                   /organism="Sugarcane streak mosaic virus"
FT                   /host="Saccharum hybrid cultivar CB08-04"
FT                   /isolate="CB08-04"
FT                   /mol_type="genomic RNA"
FT                   /country="India"
FT                   /collected_by="Bagyalakshmi, K"
FT                   /collection_date="19-Mar-2011"
FT                   /identified_by="Viswanathan, R"
FT                   /db_xref="taxon:53954"
FT   CDS             <1..>1410
FT                   /codon_start=1
FT                   /product="HC-Pro protein"
FT                   /db_xref="GOA:I6VQY5"
FT                   /db_xref="InterPro:IPR001456"
FT                   /db_xref="InterPro:IPR031159"
FT                   /db_xref="InterPro:IPR042308"
FT                   /db_xref="UniProtKB/TrEMBL:I6VQY5"
FT                   /protein_id="AFN26734.1"
FT                   /translation="TDGHKAKSHLFWDAIMKCHPDDHKFVDTTWNDEAYANMGYWLAAT
FT                   YPFRVACKECSSIKSVREWVQNMRSSKAYQLLRGGTSKHSRDLFRWLAAIQSELMTFNI
FT                   RDAQNTQEDLNRNFLGTIPIGPIFDVANQMNQAVVDIQRGLQQMHKLITDAELTHQSRD
FT                   EQILNEIARFRGLEFMQTERPMTNMKHVAMTYRNLINTASQPLSIHTMRQLLLDARSDE
FT                   AYEFDIMRGKGAIAIVAPGVFRKFDNIYSKPGVYNPEWTHLTPGGEIRTDFDYLRTDLK
FT                   ISQLHDKIHKWPENPLVDETCIVSEGEMSYHLCERVYECFAPIPHILRVGNPQNPTLIR
FT                   IQDMIDGDTYLPRQGYCYVLQFVLMLGFVGDSMVTQFVEEVGVQIQKLGKWPLFEDYMD
FT                   TIKQLILKFPTAAKAPTVLYVVNHAREYIHAITTLGCVNKNEHYLNVHSVAKLHEVMAT
FT                   LNTHKIMKYRIG"
XX
SQ   Sequence 1410 BP; 460 A; 273 C; 304 G; 373 T; 0 other;
     acagacggac ataaggcaaa atcacatcta ttttgggacg cgataatgaa atgccatcct        60
     gatgaccata agtttgttga cacaacatgg aatgatgaag cttatgcaaa catgggttat       120
     tggttggctg caacataccc atttagagtt gcttgtaaag aatgttcaag tattaagtct       180
     gttcgtgaat gggtgcaaaa tatgcgatct tctaaagctt atcaacttct aaggggcgga       240
     acatcaaagc actcgcgaga tttatttaga tggctggctg caatccaatc tgaattaatg       300
     actttcaata ttagagatgc gcaaaacaca caagaggacc ttaatagaaa ctttcttgga       360
     acaataccta tcggtccaat atttgacgtg gcgaatcaaa tgaatcaagc agtggttgat       420
     atccaaagag ggctacaaca gatgcataaa ctaatcacgg atgcagaatt aacacatcaa       480
     tcgcgagatg agcaaatcct aaacgagatt gcacgattcc gagggttaga gtttatgcaa       540
     acggagaggc ccatgacgaa catgaagcat gtcgctatga cctacagaaa cttaataaac       600
     accgctagcc aaccactatc aatacataca atgcgacaac tcctacttga tgctcgcagc       660
     gatgaagctt atgaatttga tatcatgcga ggcaagggcg caattgcaat agttgcacct       720
     ggggtttttc ggaaatttga taatatatac tcaaaacccg gtgtatacaa tccagagtgg       780
     actcatttga cgccaggagg ggaaatacga actgatttcg attatttgcg cacagacctc       840
     aaaatctcgc agttgcacga caagatccat aaatggcctg aaaatccact tgttgatgaa       900
     acgtgcattg tgtctgaagg agaaatgtca taccatttgt gtgagcgagt ttatgaatgc       960
     tttgctccca taccacacat tttgcgggtt ggcaatccac agaatccaac gctcatcaga      1020
     attcaagata tgattgatgg ggatacatac ctaccacgcc aagggtattg ttatgtgtta      1080
     caatttgtac ttatgcttgg ttttgtaggt gattcaatgg tcactcagtt tgttgaagag      1140
     gttggagttc agatacagaa gcttgggaaa tggccattgt ttgaagatta catggacact      1200
     atcaaacaat tgattttgaa attcccaaca gctgccaaag ctccaactgt gctgtacgtc      1260
     gttaatcacg cacgagagta cattcatgca ataacgacac ttgggtgtgt gaataaaaac      1320
     gaacattact taaacgttca tagtgtcgca aaattgcacg aggtgatggc aacgctcaat      1380
     acacacaaaa ttatgaaata tcgtattgga                                       1410
//