ID   JN941976; SV 1; linear; genomic RNA; STD; VRL; 1410 BP.
XX
AC   JN941976;
XX
DT   11-JUL-2012 (Rel. 113, Created)
DT   11-JUL-2012 (Rel. 113, Last updated, Version 1)
XX
DE   Sugarcane streak mosaic virus isolate CBS8436 HC-Pro protein gene, partial
DE   cds.
XX
KW   .
XX
OS   Sugarcane streak mosaic virus
OC   Viruses; Riboviria; Potyviridae; Poacevirus.
XX
RN   [1]
RP   1-1410
RX   DOI; 10.1007/s00705-012-1297-8.
RX   PUBMED; 22481599.
RA   Bagyalakshmi K., Parameswari B., Chinnaraja C., Karuppaiah R.,
RA   Ganesh Kumar V., Viswanathan R.;
RT   "Genetic variability and potential recombination events in the HC-Pro gene
RT   of sugarcane streak mosaic virus";
RL   Arch. Virol. 157(7):1371-1375(2012).
XX
RN   [2]
RP   1-1410
RA   Bagyalakshmi K., Parameswari B., Chinnaraja C., Ganesh Kumar V.,
RA   Karuppaiah R., Viswanathan R.;
RT   ;
RL   Submitted (25-OCT-2011) to the INSDC.
RL   Pathology, Sugarcane Breeding Institute, Veerakeralam, Coimbatore,
RL   Tamilnadu 641007, India
XX
DR   MD5; 4e2c46570ad977332fd6877c9f269242.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1410
FT                   /organism="Sugarcane streak mosaic virus"
FT                   /host="Saccharum hybrid cultivar CBS8436"
FT                   /isolate="CBS8436"
FT                   /mol_type="genomic RNA"
FT                   /country="India"
FT                   /collected_by="Bagyalakshmi, K"
FT                   /collection_date="19-Mar-2011"
FT                   /identified_by="Viswanathan, R"
FT                   /db_xref="taxon:53954"
FT   CDS             <1..>1410
FT                   /codon_start=1
FT                   /product="HC-Pro protein"
FT                   /db_xref="GOA:I6W9I6"
FT                   /db_xref="InterPro:IPR001456"
FT                   /db_xref="InterPro:IPR031159"
FT                   /db_xref="InterPro:IPR042308"
FT                   /db_xref="UniProtKB/TrEMBL:I6W9I6"
FT                   /protein_id="AFN26733.1"
FT                   /translation="TDGHKAKSHLFWDAIMKCHPDDHKFVDTTWNDEAYANMGYWLAAT
FT                   YPFRVACKECSSIKSVREWVQNMRASKAYQLLRGGTSKHSRDLFRWLAAIQSELMTFNI
FT                   RDAQNTQEDLNRNFLGTIPIGPIFDVANQMNQAVVDIQRGLQQMHKLITDAELTHQSRD
FT                   ERILNEIARLRGLEFMQTERLMTNMKQVAMTYRNLINTASQPLSIHTMRQLLLDARSDE
FT                   AYEFDIMRGKGAIAIVAPGVFRKFDNIYSKPGVYNSEWTHLTPGGEIRTDFDYLRTDLK
FT                   ISQLHDKIHKWPENPLVDETCIVSEGEMSYHLCERVYECFVPIPHILRVGNPQNPTLIR
FT                   IQDMIDGDTYLPRQGYCYVLQFGLMLGFVSESMVTPFVEEIGIQIQKLGKWPLFENYIG
FT                   TFYQLVLKFPTAAKAPTVLYVVNHTQEHIHAITTLGCVNKNEHYLNVHSVAKLHEVMAT
FT                   LNTHKIMKYRIG"
XX
SQ   Sequence 1410 BP; 448 A; 274 C; 315 G; 373 T; 0 other;
     acagacggac ataaggcaaa atcacatctg ttctgggacg cgattatgaa gtgtcatcct        60
     gatgaccaca agtttgttga cacgacatgg aacgatgagg cttacgcaaa catgggctat       120
     tggttggctg caacatatcc atttagggtt gcttgcaagg aatgctcgag cattaaatct       180
     gtgcgtgaat gggtgcaaaa catgcgagca tcgaaagctt atcaactctt gcgaggtggc       240
     acgtcaaagc actcgcgaga tctgtttaga tggctggcgg caattcaatc tgaattaatg       300
     actttcaata tcagagatgc gcaaaacaca caagaggacc tcaataggaa cttccttgga       360
     acgataccta ttggtccaat tttcgacgtg gcgaatcaaa tgaatcaggc ggtggtcgat       420
     attcaaagag gtttacaaca gatgcataag ctaatcacgg acgcggagtt aacacatcaa       480
     tcacgagatg agcgaatttt aaatgaaatt gcgcgacttc gagggttaga atttatgcaa       540
     acggagaggc ttatgacgaa tatgaagcag gttgctatga cctacagaaa tttgataaat       600
     accgcgagcc aaccactgtc gatacacaca atgcgacaac ttttacttga tgctcgcagt       660
     gacgaggcgt atgaattcga tattatgcga ggaaagggtg caattgcaat agtcgcacct       720
     ggtgtttttc ggaaatttga taacatatac tcaaaaccag gtgtttacaa ttcagaatgg       780
     actcatttga caccaggagg ggagatacga actgatttcg attatctgcg cacagacctc       840
     aaaatctcgc aactgcatga taaaattcac aaatggcctg agaatccact cgttgacgaa       900
     acttgcattg tgtctgaagg ggaaatgtca tatcatttgt gtgagcgagt ttatgagtgt       960
     tttgttccta taccacacat tttgcgggtt ggtaacccac aaaacccaac actcatcaga      1020
     atacaggata tgattgacgg agatacatac ctaccacgcc aagggtactg ctatgttcta      1080
     caatttgggc ttatgcttgg ttttgtaagt gaatcaatgg tcactccgtt tgttgaagaa      1140
     attggaattc aaatacaaaa acttgggaaa tggccattat ttgaaaatta cattggcacc      1200
     ttttaccaat tggttttgaa gttcccaaca gccgctaaag ctccgactgt gttgtatgtt      1260
     gttaatcata cacaagagca cattcacgca ataacaacac ttggatgtgt gaataagaac      1320
     gaacattatt taaacgtcca tagtgttgca aaattacacg aggtgatggc aacgctcaat      1380
     acacacaaaa ttatgaaata tcgtattgga                                       1410
//