ID   JN941975; SV 1; linear; genomic RNA; STD; VRL; 1410 BP.
XX
AC   JN941975;
XX
DT   11-JUL-2012 (Rel. 113, Created)
DT   11-JUL-2012 (Rel. 113, Last updated, Version 1)
XX
DE   Sugarcane streak mosaic virus isolate CB94003 HC-Pro protein gene, partial
DE   cds.
XX
KW   .
XX
OS   Sugarcane streak mosaic virus
OC   Viruses; Riboviria; Potyviridae; Poacevirus.
XX
RN   [1]
RP   1-1410
RX   DOI; 10.1007/s00705-012-1297-8.
RX   PUBMED; 22481599.
RA   Bagyalakshmi K., Parameswari B., Chinnaraja C., Karuppaiah R.,
RA   Ganesh Kumar V., Viswanathan R.;
RT   "Genetic variability and potential recombination events in the HC-Pro gene
RT   of sugarcane streak mosaic virus";
RL   Arch. Virol. 157(7):1371-1375(2012).
XX
RN   [2]
RP   1-1410
RA   Bagyalakshmi K., Parameswari B., Chinnaraja C., Ganesh Kumar V.,
RA   Karuppaiah R., Viswanathan R.;
RT   ;
RL   Submitted (25-OCT-2011) to the INSDC.
RL   Pathology, Sugarcane Breeding Institute, Veerakeralam, Coimbatore,
RL   Tamilnadu 641007, India
XX
DR   MD5; 5e2f69e010d9971fce89e4f007af6708.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1410
FT                   /organism="Sugarcane streak mosaic virus"
FT                   /host="Saccharum hybrid cultivar CB94003"
FT                   /isolate="CB94003"
FT                   /mol_type="genomic RNA"
FT                   /country="India"
FT                   /collected_by="Bagyalakshmi, K"
FT                   /collection_date="19-Mar-2011"
FT                   /identified_by="Viswanathan, R"
FT                   /db_xref="taxon:53954"
FT   CDS             <1..>1410
FT                   /codon_start=1
FT                   /product="HC-Pro protein"
FT                   /db_xref="GOA:I6WJ93"
FT                   /db_xref="InterPro:IPR001456"
FT                   /db_xref="InterPro:IPR031159"
FT                   /db_xref="InterPro:IPR042308"
FT                   /db_xref="UniProtKB/TrEMBL:I6WJ93"
FT                   /protein_id="AFN26732.1"
FT                   /translation="TDGHKAKSHLFWDAVMKCHPDDHKFVDTTWNDEAYANMGYWLAAT
FT                   YPFRVACKECSNIKSIREWVQNMRASKAYQLLRGGTSKHSRDLFRWLAAIQSELMTFNI
FT                   RDAQNTQEDLNRNFLGTIPIGPIFDVANQMNQAVVDIQRGLQQMHKLITDAELTHQSRD
FT                   EQILNEIARIRGLEFMQTERLMTNMKHVAMTYRHLINTASQPLSIHTMRQLLLDARSDE
FT                   AYEFDIMRGKGAIAIVAPGVFRKFDNIYSKPGVYNQEWTHLTPGGEIRTDFDYLRTDLK
FT                   ISQLHDKIHKWPENPFVDETCIVSEGEMSYHLCERIYECFVPIPHILRVGDPQNPTLIR
FT                   IQDMIDGDTYLPRQGYCYVLQFVLMLGFVGDSMVAPFVEEVGTQIQKLGKWPLFEDYMD
FT                   TIKQLVLKFPTAAKAPTVLYVINHAQEYIHAITTLGCVNKNEHYLNVHSVAKLHEVMAT
FT                   LNTHKIMKYRIG"
XX
SQ   Sequence 1410 BP; 452 A; 281 C; 311 G; 366 T; 0 other;
     acagacggac ataaggcaaa atcacatctg ttttgggacg cggtaatgaa atgtcatcct        60
     gatgaccaca agtttgttga cacaacatgg aacgatgagg cttatgcaaa tatgggttat       120
     tggctagctg cgacgtaccc ttttcgagtt gcttgcaaag aatgctctaa tatcaagtct       180
     attcgtgaat gggtgcaaaa tatgcgagct tccaaggctt atcagctcct aaggggtggc       240
     acatcaaagc attcgcgaga tctcttcaga tggttggcag cgatccaatc cgaattaatg       300
     acttttaata tcagggacgc tcaaaacaca caagaggatc ttaatagaaa ctttcttgga       360
     actataccta ttggtccaat cttcgatgtg gcgaaccaga tgaatcaggc agtggtggat       420
     atccaaagag gattacaaca gatgcataag ttaatcacgg atgcagagct aacacatcaa       480
     tctcgagatg agcaaattct aaatgaaatt gcacgaattc gagggttaga gttcatgcaa       540
     acagaaaggc ttatgacgaa catgaagcat gttgccatga catatagaca tttaataaac       600
     accgcaagtc aaccgctatc aatacacacg atgcgacaac tcttacttga tgctcgcagt       660
     gacgaagcgt atgaatttga catcatgcga ggaaagggtg caattgcaat agttgccccc       720
     ggtgtttttc ggaaatttga caatatatac tcaaagccgg gtgtttacaa ccaggagtgg       780
     acccatttga caccaggagg ggaaatacga actgatttcg attacctacg cacagacctc       840
     aaaatatcac agttgcatga caaaatccat aaatggcccg agaatccatt tgttgatgag       900
     acatgtattg tatctgaagg ggagatgtcg taccatctgt gtgaacgaat ttacgagtgt       960
     tttgttccca taccacacat tctacgagtt ggtgatccac aaaatccaac gcttatcaga      1020
     attcaggata tgatcgatgg ggatacatac ctaccacgcc aagggtactg ttatgtttta      1080
     caatttgtac ttatgcttgg tttcgtaggt gactcgatgg tggccccatt tgtagaagaa      1140
     gttggaactc agatacagaa gcttgggaaa tggccgttgt ttgaagacta catggatact      1200
     attaaacaat tggttttgaa attcccaacg gctgcgaaag ctccaactgt gctatatgtt      1260
     atcaaccacg cacaagagta cattcacgcg ataacaacac ttgggtgtgt aaacaaaaac      1320
     gaacattact taaacgtcca tagtgttgca aagttacacg aggtgatggc aacgctcaat      1380
     acacacaaaa ttatgaaata tcgtattgga                                       1410
//