ID   JN941974; SV 1; linear; genomic RNA; STD; VRL; 1410 BP.
XX
AC   JN941974;
XX
DT   11-JUL-2012 (Rel. 113, Created)
DT   11-JUL-2012 (Rel. 113, Last updated, Version 1)
XX
DE   Sugarcane streak mosaic virus isolate CBV2000V59 HC-Pro protein gene,
DE   partial cds.
XX
KW   .
XX
OS   Sugarcane streak mosaic virus
OC   Viruses; Riboviria; Potyviridae; Poacevirus.
XX
RN   [1]
RP   1-1410
RX   DOI; 10.1007/s00705-012-1297-8.
RX   PUBMED; 22481599.
RA   Bagyalakshmi K., Parameswari B., Chinnaraja C., Karuppaiah R.,
RA   Ganesh Kumar V., Viswanathan R.;
RT   "Genetic variability and potential recombination events in the HC-Pro gene
RT   of sugarcane streak mosaic virus";
RL   Arch. Virol. 157(7):1371-1375(2012).
XX
RN   [2]
RP   1-1410
RA   Bagyalakshmi K., Parameswari B., Chinnaraja C., Ganesh Kumar V.,
RA   Karuppaiah R., Viswanathan R.;
RT   ;
RL   Submitted (25-OCT-2011) to the INSDC.
RL   Pathology, Sugarcane Breeding Institute, Veerakeralam, Coimbatore,
RL   Tamilnadu 641007, India
XX
DR   MD5; c5a40e13c547a207110a06a473f9516b.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1410
FT                   /organism="Sugarcane streak mosaic virus"
FT                   /host="Saccharum hybrid cultivar CBV2000V59"
FT                   /isolate="CBV2000V59"
FT                   /mol_type="genomic RNA"
FT                   /country="India"
FT                   /collected_by="Bagyalakshmi, K"
FT                   /collection_date="19-Mar-2011"
FT                   /identified_by="Viswanathan, R"
FT                   /db_xref="taxon:53954"
FT   CDS             <1..>1410
FT                   /codon_start=1
FT                   /product="HC-Pro protein"
FT                   /db_xref="GOA:I6VFY8"
FT                   /db_xref="InterPro:IPR001456"
FT                   /db_xref="InterPro:IPR031159"
FT                   /db_xref="InterPro:IPR042308"
FT                   /db_xref="UniProtKB/TrEMBL:I6VFY8"
FT                   /protein_id="AFN26731.1"
FT                   /translation="TDGHKAKSHLFWDAIMKCHPDDHKFVDTTWNDEAYANMGYWLAAT
FT                   YPFRVACKECSSIKSVREWVQNMQASKAYQLLRGGTSKHSRDLFRWLAAIQSELMTFNI
FT                   RDAQNTQEDLNRNFLGTIPIGPIFDVANQMNQAVVDIQRGLQQMHKLITDAELTHQSRD
FT                   EQILNEIARLRGLEFMQTERLMTNMKHVAMTYRNLINTASQPLSIHTMRQLLLDARSDE
FT                   AYEFDIVRGKGAIAIVAPGVFRKFDNIYSQPGVYNPEWTHLTPGGEIRTDFDYLRTDLK
FT                   ISQLHDKIHKWPENPLVDETCVVSEGEMSYHLCERVYECFVPIPYILRVGNPQNPTLIR
FT                   IQDMIDGDTYLPRQGYCYVLQFVLMLGFVGDSMVTPFVEEVGVQIQKLGKWPLFEDYMD
FT                   TIKQLVLKFPTAAKAPTVLYVVNHTQEYIHAITTLGCVNKNEHYLNVHSVAKLHEVMAT
FT                   LNTHKIIKYRIG"
XX
SQ   Sequence 1410 BP; 453 A; 279 C; 311 G; 367 T; 0 other;
     acagacggac ataaggcaaa atcacatcta ttctgggacg cgattatgaa gtgtcatcct        60
     gatgaccaca agtttgttga cacgacatgg aacgatgagg cttatgcaaa catgggctat       120
     tggttggctg caacatatcc atttagggtt gcttgcaaag aatgctcgag cattaaatct       180
     gttcgtgaat gggtacaaaa catgcaagca tcgaaagctt atcaactctt gcgaggcggt       240
     acgtcaaagc actcgcgaga tctatttaga tggctggcgg caattcaatc tgaattaatg       300
     actttcaata tcagagatgc gcaaaacaca caagaggacc tcaataggaa cttccttggg       360
     acgataccta tcggtccaat tttcgacgtg gcgaatcaaa tgaatcaggc ggtagttgat       420
     attcaaagag gtttacaaca gatgcataaa ctaatcacgg acgcggagtt aacacatcaa       480
     tcacgagatg agcaaatttt aaatgaaatt gcacgacttc gaggattaga atttatgcaa       540
     acggagaggc ttatgacgaa tatgaagcat gttgctatga cctacagaaa tttaataaac       600
     accgcaagtc aaccactatc aatacacacg atgcgacaac tcctgctcga tgctcgcagt       660
     gatgaagctt atgagttcga tatcgtgcga ggaaagggcg caatcgcaat agttgcacct       720
     ggagttttcc gaaaattcga taacatatac tcacaaccag gtgtttacaa tccagaatgg       780
     acccatttga caccaggagg ggaaatacga actgatttcg actacttgcg tacagacctc       840
     aaaatctcgc agctgcacga taaaatccac aaatggcctg agaatccact tgttgatgaa       900
     acgtgcgttg tatctgaagg ggagatgtca tatcatttgt gtgaacgagt ttatgagtgt       960
     tttgttccta taccatacat tttgcgggtt ggcaatccac agaacccaac gctcatcaga      1020
     atccaggata tgattgacgg agatacatac ctaccacgcc aagggtactg ctatgttcta      1080
     caatttgtgc taatgcttgg ttttgtaggt gattcgatgg tcactccgtt tgttgaagaa      1140
     gttggagttc agatacagaa gcttgggaag tggccattat ttgaagatta catggacact      1200
     attaaacaat tggttttgaa gtttccaaca gcagctaaag ctccgactgt gttgtatgtt      1260
     gttaatcaca cacaagagta cattcacgca ataacaacac ttggatgtgt gaataagaac      1320
     gaacattatt taaacgtcca tagtgttgca aaattacacg aggtgatggc aacgctcaac      1380
     acacacaaaa ttataaaata tcgtattgga                                       1410
//